RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CCDC125Q86Z20 511 aa30.77■■■□□ 2.52
CCDC28B-203ENST00000461819 TNS1Q9HBL0 1735 aaKnown RBP30.77■■■□□ 2.52
CCDC28B-203ENST00000461819 SF3B2Q13435 895 aaKnown RBP30.76■■■□□ 2.51
CCDC28B-203ENST00000461819 RALBP1Q15311 655 aa30.76■■■□□ 2.51
CCDC28B-203ENST00000461819 ZCRB1Q8TBF4 217 aaKnown RBP30.76■■■□□ 2.51
CCDC28B-203ENST00000461819 DDX54Q8TDD1 881 aaKnown RBP30.75■■■□□ 2.51
CCDC28B-203ENST00000461819 KAT6BQ8WYB5 2073 aa30.72■■■□□ 2.51
CCDC28B-203ENST00000461819 TRIM37O94972 964 aa30.72■■■□□ 2.51
CCDC28B-203ENST00000461819 SULT6B1Q6IMI4 303 aa30.71■■■□□ 2.51
CCDC28B-203ENST00000461819 BCL9O00512 1426 aa30.71■■■□□ 2.51
CCDC28B-203ENST00000461819 AEBP1Q8IUX7 1158 aa30.7■■■□□ 2.51
CCDC28B-203ENST00000461819 PCDH11XQ9BZA7 1347 aa30.7■■■□□ 2.5
CCDC28B-203ENST00000461819 PCDH11YQ9BZA8 1340 aa30.7■■■□□ 2.5
CCDC28B-203ENST00000461819 NHSQ6T4R5 1651 aa30.68■■■□□ 2.5
CCDC28B-203ENST00000461819 KDRP35968 1356 aa30.68■■■□□ 2.5
CCDC28B-203ENST00000461819 DOT1LQ8TEK3 1739 aa30.68■■■□□ 2.5
CCDC28B-203ENST00000461819 U2SURPO15042 1029 aaKnown RBP30.68■■■□□ 2.5
CCDC28B-203ENST00000461819 SPG7Q9UQ90 795 aa30.68■■■□□ 2.5
CCDC28B-203ENST00000461819 PLEKHG2Q9H7P9 1386 aa30.66■■■□□ 2.5
CCDC28B-203ENST00000461819 MYBBP1AQ9BQG0 1328 aaKnown RBP30.66■■■□□ 2.5
CCDC28B-203ENST00000461819 HMOX1P09601 288 aa30.65■■■□□ 2.5
CCDC28B-203ENST00000461819 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.64■■■□□ 2.5
CCDC28B-203ENST00000461819 NUDCQ9Y266 331 aa30.64■■■□□ 2.5
CCDC28B-203ENST00000461819 BAG6P46379 1132 aa30.63■■■□□ 2.49
CCDC28B-203ENST00000461819 PRKRIP1Q9H875 184 aaPredicted RBP30.63■■■□□ 2.49
CCDC28B-203ENST00000461819 ACSBG1Q96GR2 724 aa30.62■■■□□ 2.49
CCDC28B-203ENST00000461819 CYP27B1O15528 508 aa30.6■■■□□ 2.49
CCDC28B-203ENST00000461819 APBA3O96018 575 aa30.6■■■□□ 2.49
CCDC28B-203ENST00000461819 PLEKHO1Q53GL0 409 aaPredicted RBP30.6■■■□□ 2.49
CCDC28B-203ENST00000461819 DEFB132Q7Z7B7 95 aa30.6■■■□□ 2.49
CCDC28B-203ENST00000461819 BTAF1O14981 1849 aa30.59■■■□□ 2.49
CCDC28B-203ENST00000461819 BCL11BQ9C0K0 894 aaPredicted RBP30.59■■■□□ 2.49
CCDC28B-203ENST00000461819 AMOTQ4VCS5 1084 aa30.58■■■□□ 2.49
CCDC28B-203ENST00000461819 TOGARAM1Q9Y4F4 1720 aa30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 U2AF1L5P0DN76 240 aaPredicted RBP30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 U2AF1Q01081 240 aaKnown RBP eCLIP30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 IFNL2Q8IZJ0 200 aa30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 RGPD3A6NKT7 1758 aaPredicted RBP30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 RGPD4Q7Z3J3 1758 aa30.56■■■□□ 2.48
CCDC28B-203ENST00000461819 KCNQ2O43526 872 aa30.55■■■□□ 2.48
CCDC28B-203ENST00000461819 ZNF530Q6P9A1 599 aaPredicted RBP30.55■■■□□ 2.48
CCDC28B-203ENST00000461819 PTF1AQ7RTS3 328 aa30.55■■■□□ 2.48
CCDC28B-203ENST00000461819 ITGB4P16144 1822 aa30.54■■■□□ 2.48
CCDC28B-203ENST00000461819 PHKG2P15735 406 aa30.54■■■□□ 2.48
CCDC28B-203ENST00000461819 EN1Q05925 392 aaPredicted RBP30.54■■■□□ 2.48
CCDC28B-203ENST00000461819 SYTL4Q96C24 671 aaPredicted RBP30.54■■■□□ 2.48
CCDC28B-203ENST00000461819 C1orf141Q5JVX7 400 aa30.51■■■□□ 2.47
CCDC28B-203ENST00000461819 VIRMAQ69YN4 1812 aaKnown RBP30.5■■■□□ 2.47
CCDC28B-203ENST00000461819 ANP32CO43423 234 aa30.5■■■□□ 2.47
CCDC28B-203ENST00000461819 PRIM1P49642 420 aaKnown RBP30.5■■■□□ 2.47
CCDC28B-203ENST00000461819 RREB1Q92766 1687 aa30.49■■■□□ 2.47
CCDC28B-203ENST00000461819 NKX1-1Q15270 411 aaPredicted RBP30.49■■■□□ 2.47
CCDC28B-203ENST00000461819 PRKAR2BP31323 418 aa30.48■■■□□ 2.47
CCDC28B-203ENST00000461819 RSPH6AQ9H0K4 717 aa30.48■■■□□ 2.47
CCDC28B-203ENST00000461819 HSP90AB1P08238 724 aaKnown RBP30.47■■■□□ 2.47
CCDC28B-203ENST00000461819 EZH2Q15910 746 aaKnown RBP30.47■■■□□ 2.47
CCDC28B-203ENST00000461819 SCN11AQ9UI33 1791 aa30.46■■■□□ 2.47
CCDC28B-203ENST00000461819 FCHSD2O94868 740 aa30.45■■■□□ 2.47
CCDC28B-203ENST00000461819 CAMKK2Q96RR4 588 aa30.45■■■□□ 2.47
CCDC28B-203ENST00000461819 NUP188Q5SRE5 1749 aa30.44■■■□□ 2.46
CCDC28B-203ENST00000461819 PLSCR1O15162 318 aa30.44■■■□□ 2.46
CCDC28B-203ENST00000461819 MTHFSDQ2M296 383 aaKnown RBP30.44■■■□□ 2.46
CCDC28B-203ENST00000461819 DCAF5Q96JK2 942 aa30.43■■■□□ 2.46
CCDC28B-203ENST00000461819 AKAP4Q5JQC9 854 aa30.42■■■□□ 2.46
CCDC28B-203ENST00000461819 MPRIPQ6WCQ1 1025 aa30.42■■■□□ 2.46
CCDC28B-203ENST00000461819 KDM6AO15550 1401 aaPredicted RBP30.41■■■□□ 2.46
CCDC28B-203ENST00000461819 GAS2L2Q8NHY3 880 aa30.4■■■□□ 2.46
CCDC28B-203ENST00000461819 NEFMP07197 916 aa30.39■■■□□ 2.46
CCDC28B-203ENST00000461819 WDR43Q15061 677 aaKnown RBP eCLIP30.39■■■□□ 2.46
CCDC28B-203ENST00000461819 TMOD3Q9NYL9 352 aa30.39■■■□□ 2.46
CCDC28B-203ENST00000461819 PHACTR3Q96KR7 559 aa30.38■■■□□ 2.45
CCDC28B-203ENST00000461819 LY75O60449 1722 aa30.38■■■□□ 2.45
CCDC28B-203ENST00000461819 PNNQ9H307 717 aaKnown RBP30.37■■■□□ 2.45
CCDC28B-203ENST00000461819 MAP3K5Q99683 1374 aa30.36■■■□□ 2.45
CCDC28B-203ENST00000461819 ERVV-2B6SEH9 535 aa30.35■■■□□ 2.45
CCDC28B-203ENST00000461819 ADAMTS7Q9UKP4 1686 aa30.35■■■□□ 2.45
CCDC28B-203ENST00000461819 PIGBQ92521 554 aa30.34■■■□□ 2.45
CCDC28B-203ENST00000461819 DLG5Q8TDM6 1919 aa30.34■■■□□ 2.45
CCDC28B-203ENST00000461819 MAPK8IP3Q9UPT6 1336 aa30.33■■■□□ 2.45
CCDC28B-203ENST00000461819 CABP4P57796 275 aa30.33■■■□□ 2.45
CCDC28B-203ENST00000461819 TXNRD1Q16881 649 aa30.33■■■□□ 2.45
CCDC28B-203ENST00000461819 GNAT3A8MTJ3 354 aa30.32■■■□□ 2.44
CCDC28B-203ENST00000461819 PALLDQ8WX93 1383 aa30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 RNMTO43148 476 aaKnown RBP30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 PROM2Q8N271 834 aa30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 SMARCC1Q92922 1105 aaPredicted RBP30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 PLEKHF1Q96S99 279 aa30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 LGR6Q9HBX8 967 aa30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 MRC1P22897 1456 aa30.29■■■□□ 2.44
CCDC28B-203ENST00000461819 CCDC184Q52MB2 194 aa30.26■■■□□ 2.43
CCDC28B-203ENST00000461819 NBPF14Q5TI25 921 aa30.26■■■□□ 2.43
CCDC28B-203ENST00000461819 MRS2Q9HD23 443 aa30.26■■■□□ 2.43
CCDC28B-203ENST00000461819 SLC27A3Q5K4L6 730 aa30.25■■■□□ 2.43
CCDC28B-203ENST00000461819 NFATC2IPQ8NCF5 419 aa30.25■■■□□ 2.43
CCDC28B-203ENST00000461819 RTF1Q92541 710 aaKnown RBP30.25■■■□□ 2.43
CCDC28B-203ENST00000461819 ADAMTS8Q9UP79 889 aa30.25■■■□□ 2.43
CCDC28B-203ENST00000461819 SIPA1L3O60292 1781 aaPredicted RBP30.24■■■□□ 2.43
CCDC28B-203ENST00000461819 SLC52A2Q9HAB3 445 aa30.24■■■□□ 2.43
CCDC28B-203ENST00000461819 CCNL1Q9UK58 526 aaPredicted RBP30.24■■■□□ 2.43
CCDC28B-203ENST00000461819 ASAP1Q9ULH1 1129 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms