RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 POLKQ9UBT6 870 aa20.2■□□□□ 0.82
TMEM39A-203ENST00000461654 NUDCQ9Y266 331 aa20.2■□□□□ 0.82
TMEM39A-203ENST00000461654 SBF2Q86WG5 1849 aa20.2■□□□□ 0.82
TMEM39A-203ENST00000461654 PSDA5PKW4 1024 aaPredicted RBP20.19■□□□□ 0.82
TMEM39A-203ENST00000461654 HNRNPUQ00839 825 aaKnown RBP eCLIP20.19■□□□□ 0.82
TMEM39A-203ENST00000461654 FAM208AQ9UK61 1670 aaKnown RBP20.19■□□□□ 0.82
TMEM39A-203ENST00000461654 R3HDM1Q15032 1099 aaKnown RBP20.18■□□□□ 0.82
TMEM39A-203ENST00000461654 RRS1Q15050 365 aaKnown RBP20.18■□□□□ 0.82
TMEM39A-203ENST00000461654 PTF1AQ7RTS3 328 aa20.18■□□□□ 0.82
TMEM39A-203ENST00000461654 LTV1Q96GA3 475 aaPredicted RBP20.18■□□□□ 0.82
TMEM39A-203ENST00000461654 RREB1Q92766 1687 aa20.17■□□□□ 0.82
TMEM39A-203ENST00000461654 NBPF14Q5TI25 921 aa20.17■□□□□ 0.82
TMEM39A-203ENST00000461654 INSRP06213 1382 aa20.17■□□□□ 0.82
TMEM39A-203ENST00000461654 DIAPH1O60610 1272 aaKnown RBP20.16■□□□□ 0.82
TMEM39A-203ENST00000461654 EMILIN1Q9Y6C2 1016 aa20.16■□□□□ 0.82
TMEM39A-203ENST00000461654 SMG6Q86US8 1419 aaKnown RBP20.16■□□□□ 0.82
TMEM39A-203ENST00000461654 RGPD3A6NKT7 1758 aaPredicted RBP20.16■□□□□ 0.82
TMEM39A-203ENST00000461654 RGPD4Q7Z3J3 1758 aa20.16■□□□□ 0.82
TMEM39A-203ENST00000461654 ADAMTS8Q9UP79 889 aa20.15■□□□□ 0.82
TMEM39A-203ENST00000461654 FLT4P35916 1363 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 NBPF6Q5VWK0 638 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 PROM2Q8N271 834 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 NBPF4Q96M43 638 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 NUP188Q5SRE5 1749 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 LRP5O75197 1615 aa20.13■□□□□ 0.81
TMEM39A-203ENST00000461654 HSP90AB2PQ58FF8 381 aa20.12■□□□□ 0.81
TMEM39A-203ENST00000461654 U2SURPO15042 1029 aaKnown RBP20.11■□□□□ 0.81
TMEM39A-203ENST00000461654 KCNQ2O43526 872 aa20.11■□□□□ 0.81
TMEM39A-203ENST00000461654 U2AF1L5P0DN76 240 aaPredicted RBP20.1■□□□□ 0.81
TMEM39A-203ENST00000461654 U2AF1Q01081 240 aaKnown RBP eCLIP20.1■□□□□ 0.81
TMEM39A-203ENST00000461654 SRCAPQ6ZRS2 3230 aa20.1■□□□□ 0.81
TMEM39A-203ENST00000461654 MAP2P11137 1827 aaKnown RBP20.09■□□□□ 0.81
TMEM39A-203ENST00000461654 ZCRB1Q8TBF4 217 aaKnown RBP20.09■□□□□ 0.81
TMEM39A-203ENST00000461654 PNNQ9H307 717 aaKnown RBP20.09■□□□□ 0.81
TMEM39A-203ENST00000461654 COL3A1P02461 1466 aaPredicted RBP20.09■□□□□ 0.81
TMEM39A-203ENST00000461654 NHSQ6T4R5 1651 aa20.08■□□□□ 0.81
TMEM39A-203ENST00000461654 TXNRD1Q16881 649 aa20.08■□□□□ 0.81
TMEM39A-203ENST00000461654 DDX54Q8TDD1 881 aaKnown RBP20.08■□□□□ 0.81
TMEM39A-203ENST00000461654 ACSBG1Q96GR2 724 aa20.07■□□□□ 0.8
TMEM39A-203ENST00000461654 MEGF6O75095 1541 aa20.06■□□□□ 0.8
TMEM39A-203ENST00000461654 RGPD2P0DJD1 1756 aa20.06■□□□□ 0.8
TMEM39A-203ENST00000461654 ZBED9Q6R2W3 1325 aa20.05■□□□□ 0.8
TMEM39A-203ENST00000461654 RAPGEF4Q8WZA2 1011 aa20.05■□□□□ 0.8
TMEM39A-203ENST00000461654 NEFMP07197 916 aa20.04■□□□□ 0.8
TMEM39A-203ENST00000461654 IL13P35225 146 aa20.04■□□□□ 0.8
TMEM39A-203ENST00000461654 TATP17735 454 aaPredicted RBP20.03■□□□□ 0.8
TMEM39A-203ENST00000461654 USHBP1Q8N6Y0 703 aa20.03■□□□□ 0.8
TMEM39A-203ENST00000461654 RUNDC1Q96C34 613 aa20.03■□□□□ 0.8
TMEM39A-203ENST00000461654 ANO8Q9HCE9 1232 aaPredicted RBP20.03■□□□□ 0.8
TMEM39A-203ENST00000461654 NCAPD2Q15021 1401 aa20.02■□□□□ 0.8
TMEM39A-203ENST00000461654 CCDC146Q8IYE0 955 aa20.02■□□□□ 0.8
TMEM39A-203ENST00000461654 FCHSD2O94868 740 aa20.01■□□□□ 0.79
TMEM39A-203ENST00000461654 EIF4A2Q14240 407 aaKnown RBP20.01■□□□□ 0.79
TMEM39A-203ENST00000461654 NGEFQ8N5V2 710 aa20.01■□□□□ 0.79
TMEM39A-203ENST00000461654 MAPK8IP3Q9UPT6 1336 aa20.01■□□□□ 0.79
TMEM39A-203ENST00000461654 PRIM1P49642 420 aaKnown RBP19.99■□□□□ 0.79
TMEM39A-203ENST00000461654 SLC15A2Q16348 729 aa19.99■□□□□ 0.79
TMEM39A-203ENST00000461654 SHANK3Q9BYB0 1731 aa19.99■□□□□ 0.79
TMEM39A-203ENST00000461654 BTAF1O14981 1849 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 SLC27A3Q5K4L6 730 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 EYA1Q99502 592 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 STK32BQ9NY57 414 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 PCDH11XQ9BZA7 1347 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 PCDH11YQ9BZA8 1340 aa19.98■□□□□ 0.79
TMEM39A-203ENST00000461654 APAF1O14727 1248 aa19.97■□□□□ 0.79
TMEM39A-203ENST00000461654 SPON1Q9HCB6 807 aa19.97■□□□□ 0.79
TMEM39A-203ENST00000461654 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.97■□□□□ 0.792e-6■■□□□ 11.9
TMEM39A-203ENST00000461654 SALL2Q9Y467 1007 aaPredicted RBP19.96■□□□□ 0.79
TMEM39A-203ENST00000461654 HMOX1P09601 288 aa19.95■□□□□ 0.78
TMEM39A-203ENST00000461654 PLEKHG2Q9H7P9 1386 aa19.95■□□□□ 0.78
TMEM39A-203ENST00000461654 SENP3-EIF4A1A0A087X0R7 540 aa19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 CYP27B1O15528 508 aa19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 PRKAR2BP31323 418 aa19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 NKX1-1Q15270 411 aaPredicted RBP19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 SYTL4Q96C24 671 aaPredicted RBP19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 RSPH6AQ9H0K4 717 aa19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 LRRC4BQ9NT99 713 aa19.94■□□□□ 0.78
TMEM39A-203ENST00000461654 SULT6B1Q6IMI4 303 aa19.93■□□□□ 0.78
TMEM39A-203ENST00000461654 SPG7Q9UQ90 795 aa19.93■□□□□ 0.78
TMEM39A-203ENST00000461654 CASZ1Q86V15 1759 aa19.93■□□□□ 0.78
TMEM39A-203ENST00000461654 PAPPAQ13219 1627 aa19.92■□□□□ 0.78
TMEM39A-203ENST00000461654 PLEKHF1Q96S99 279 aa19.92■□□□□ 0.78
TMEM39A-203ENST00000461654 PDGFDQ9GZP0 370 aaPredicted RBP19.92■□□□□ 0.78
TMEM39A-203ENST00000461654 DOT1LQ8TEK3 1739 aa19.92■□□□□ 0.78
TMEM39A-203ENST00000461654 NCBP3Q53F19 620 aaKnown RBP19.91■□□□□ 0.78
TMEM39A-203ENST00000461654 IGSF1Q8N6C5 1336 aa19.91■□□□□ 0.78
TMEM39A-203ENST00000461654 PKD1L3Q7Z443 1732 aa19.9■□□□□ 0.78
TMEM39A-203ENST00000461654 AKT1S1Q96B36 256 aa19.9■□□□□ 0.78
TMEM39A-203ENST00000461654 KAT6BQ8WYB5 2073 aa19.9■□□□□ 0.78
TMEM39A-203ENST00000461654 NEUROD2Q15784 382 aa19.89■□□□□ 0.77
TMEM39A-203ENST00000461654 HMGB2P26583 209 aaKnown RBP19.88■□□□□ 0.77
TMEM39A-203ENST00000461654 TMPOP42166 694 aaKnown RBP19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 ZNF827Q17R98 1081 aa19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 AEBP1Q8IUX7 1158 aa19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 MTFR1LQ9H019 292 aa19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 RRP7AQ9Y3A4 280 aaKnown RBP19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 LY75O60449 1722 aa19.87■□□□□ 0.77
TMEM39A-203ENST00000461654 ZBTB7AO95365 584 aa19.86■□□□□ 0.77
TMEM39A-203ENST00000461654 PTGER2P43116 358 aa19.86■□□□□ 0.77
TMEM39A-203ENST00000461654 CCDC27Q2M243 656 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms