RNA–Protein interactions for RNA: ENST00000460801.5

PTPRN-210, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 2

Gene PTPRN, Length 2,239 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-210ENST00000460801 CHMP4BQ9H444 224 aaKnown RBP17.66■□□□□ 0.42
PTPRN-210ENST00000460801 LTN1O94822 1766 aa17.66■□□□□ 0.42
PTPRN-210ENST00000460801 HTATSF1O43719 755 aaKnown RBP17.66■□□□□ 0.42
PTPRN-210ENST00000460801 SMC5Q8IY18 1101 aa17.66■□□□□ 0.42
PTPRN-210ENST00000460801 API5Q9BZZ5 524 aaKnown RBP17.66■□□□□ 0.42
PTPRN-210ENST00000460801 RTF1Q92541 710 aaKnown RBP17.65■□□□□ 0.42
PTPRN-210ENST00000460801 KRT24Q2M2I5 525 aa17.64■□□□□ 0.41
PTPRN-210ENST00000460801 IP6K1Q92551 441 aa17.64■□□□□ 0.41
PTPRN-210ENST00000460801 ORAI2Q96SN7 254 aa17.63■□□□□ 0.41
PTPRN-210ENST00000460801 KCNH5Q8NCM2 988 aa17.63■□□□□ 0.41
PTPRN-210ENST00000460801 DDRGK1Q96HY6 314 aa17.63■□□□□ 0.41
PTPRN-210ENST00000460801 PROSER2Q86WR7 435 aaPredicted RBP17.62■□□□□ 0.41
PTPRN-210ENST00000460801 PHRF1Q9P1Y6 1649 aaKnown RBP17.62■□□□□ 0.41
PTPRN-210ENST00000460801 LRRC37A3O60309 1634 aa17.62■□□□□ 0.41
PTPRN-210ENST00000460801 LTV1Q96GA3 475 aaPredicted RBP17.61■□□□□ 0.41
PTPRN-210ENST00000460801 GNAT3A8MTJ3 354 aa17.6■□□□□ 0.41
PTPRN-210ENST00000460801 TSPYL4Q9UJ04 414 aa17.6■□□□□ 0.41
PTPRN-210ENST00000460801 MIS18AQ9NYP9 233 aa17.59■□□□□ 0.41
PTPRN-210ENST00000460801 INTS3Q68E01 1043 aaKnown RBP17.59■□□□□ 0.41
PTPRN-210ENST00000460801 C19orf44Q9H6X5 657 aa17.59■□□□□ 0.41
PTPRN-210ENST00000460801 RGS12O14924 1447 aa17.59■□□□□ 0.41
PTPRN-210ENST00000460801 SLIT3O75094 1523 aa17.58■□□□□ 0.41
PTPRN-210ENST00000460801 MSH6P52701 1360 aa17.58■□□□□ 0.41
PTPRN-210ENST00000460801 MAP3K5Q99683 1374 aa17.58■□□□□ 0.4
PTPRN-210ENST00000460801 C1orf167Q5SNV9 1468 aa17.57■□□□□ 0.4
PTPRN-210ENST00000460801 USP19O94966 1318 aa17.57■□□□□ 0.4
PTPRN-210ENST00000460801 PTPRCP08575 1304 aa17.57■□□□□ 0.4
PTPRN-210ENST00000460801 TRPM3Q9HCF6 1732 aaPredicted RBP17.57■□□□□ 0.4
PTPRN-210ENST00000460801 NUCB1Q02818 461 aa17.57■□□□□ 0.4
PTPRN-210ENST00000460801 KIF1AQ12756 1690 aa17.57■□□□□ 0.4
PTPRN-210ENST00000460801 SEC24BO95487 1268 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 NBPF6Q5VWK0 638 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 NBPF4Q96M43 638 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 GCP02774 474 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 USHBP1Q8N6Y0 703 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 IL17REQ8NFR9 667 aa17.56■□□□□ 0.4
PTPRN-210ENST00000460801 XPCQ01831 940 aaPredicted RBP17.55■□□□□ 0.4
PTPRN-210ENST00000460801 ARHGEF25Q86VW2 580 aa17.55■□□□□ 0.4
PTPRN-210ENST00000460801 BABAM1Q9NWV8 329 aa17.55■□□□□ 0.4
PTPRN-210ENST00000460801 SIRT2Q8IXJ6 389 aa17.55■□□□□ 0.4
PTPRN-210ENST00000460801 GCC1Q96CN9 775 aa17.55■□□□□ 0.4
PTPRN-210ENST00000460801 C1orf115Q9H7X2 142 aa17.55■□□□□ 0.4
PTPRN-210ENST00000460801 SLC4A2P04920 1241 aa17.54■□□□□ 0.4
PTPRN-210ENST00000460801 KRT28Q7Z3Y7 464 aa17.54■□□□□ 0.4
PTPRN-210ENST00000460801 MST1RQ04912 1400 aa17.54■□□□□ 0.4
PTPRN-210ENST00000460801 CHD1LQ86WJ1 897 aa17.53■□□□□ 0.4
PTPRN-210ENST00000460801 TAF7Q15545 349 aaPredicted RBP17.52■□□□□ 0.4
PTPRN-210ENST00000460801 RGPD2P0DJD1 1756 aa17.52■□□□□ 0.4
PTPRN-210ENST00000460801 SOS1Q07889 1333 aaPredicted RBP17.52■□□□□ 0.39
PTPRN-210ENST00000460801 NCAPD2Q15021 1401 aa17.51■□□□□ 0.39
PTPRN-210ENST00000460801 NCOA3Q9Y6Q9 1424 aa17.51■□□□□ 0.39
PTPRN-210ENST00000460801 STRCP1A6NGW2 1772 aa17.51■□□□□ 0.39
PTPRN-210ENST00000460801 CEMIPQ8WUJ3 1361 aa17.51■□□□□ 0.39
PTPRN-210ENST00000460801 DCCP43146 1447 aa17.5■□□□□ 0.39
PTPRN-210ENST00000460801 TMEM94Q12767 1356 aa17.5■□□□□ 0.39
PTPRN-210ENST00000460801 ZBTB7CA1YPR0 619 aa17.5■□□□□ 0.39
PTPRN-210ENST00000460801 LNPKQ9C0E8 428 aa17.5■□□□□ 0.39
PTPRN-210ENST00000460801 LRRC59Q96AG4 307 aaKnown RBP17.49■□□□□ 0.39
PTPRN-210ENST00000460801 ALS2Q96Q42 1657 aa17.49■□□□□ 0.39
PTPRN-210ENST00000460801 LMOD2Q6P5Q4 547 aa17.49■□□□□ 0.39
PTPRN-210ENST00000460801 G2E3Q7L622 706 aa17.49■□□□□ 0.39
PTPRN-210ENST00000460801 CACNA1FO60840 1977 aa17.49■□□□□ 0.39
PTPRN-210ENST00000460801 ATF3P18847 181 aa17.48■□□□□ 0.39
PTPRN-210ENST00000460801 MED1Q15648 1581 aaPredicted RBP17.48■□□□□ 0.39
PTPRN-210ENST00000460801 ANKRD45Q5TZF3 282 aa17.48■□□□□ 0.39
PTPRN-210ENST00000460801 CCDC30Q5VVM6 783 aa17.48■□□□□ 0.39
PTPRN-210ENST00000460801 STK31Q9BXU1 1019 aa17.48■□□□□ 0.39
PTPRN-210ENST00000460801 FAM208AQ9UK61 1670 aaKnown RBP17.47■□□□□ 0.39
PTPRN-210ENST00000460801 ATP10DQ9P241 1426 aa17.47■□□□□ 0.39
PTPRN-210ENST00000460801 LMO7Q8WWI1 1683 aa17.47■□□□□ 0.39
PTPRN-210ENST00000460801 RPAP2Q8IXW5 612 aaPredicted RBP17.47■□□□□ 0.39
PTPRN-210ENST00000460801 ANKRD44Q8N8A2 993 aa17.47■□□□□ 0.39
PTPRN-210ENST00000460801 ANKRD24Q8TF21 1146 aa17.47■□□□□ 0.39
PTPRN-210ENST00000460801 UPF2Q9HAU5 1272 aaKnown RBP17.47■□□□□ 0.39
PTPRN-210ENST00000460801 CAMTA1Q9Y6Y1 1673 aa17.47■□□□□ 0.39
PTPRN-210ENST00000460801 PLEKHO1Q53GL0 409 aaPredicted RBP17.46■□□□□ 0.39
PTPRN-210ENST00000460801 TBC1D32Q96NH3 1257 aa17.46■□□□□ 0.39
PTPRN-210ENST00000460801 DCTPP1Q9H773 170 aa17.46■□□□□ 0.39
PTPRN-210ENST00000460801 AMOTQ4VCS5 1084 aa17.45■□□□□ 0.38
PTPRN-210ENST00000460801 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
PTPRN-210ENST00000460801 AXIN2Q9Y2T1 843 aa17.45■□□□□ 0.38
PTPRN-210ENST00000460801 SLC4A3P48751 1232 aa17.45■□□□□ 0.38
PTPRN-210ENST00000460801 CCT4P50991 539 aaKnown RBP17.45■□□□□ 0.38
PTPRN-210ENST00000460801 LGR6Q9HBX8 967 aa17.45■□□□□ 0.38
PTPRN-210ENST00000460801 DAXXQ9UER7 740 aaPredicted RBP17.45■□□□□ 0.38
PTPRN-210ENST00000460801 MEIS3Q99687 375 aa17.44■□□□□ 0.38
PTPRN-210ENST00000460801 PLEKHG5O94827 1062 aa17.44■□□□□ 0.38
PTPRN-210ENST00000460801 FLIIQ13045 1269 aa17.44■□□□□ 0.38
PTPRN-210ENST00000460801 CEP85Q6P2H3 762 aa17.44■□□□□ 0.38
PTPRN-210ENST00000460801 ZNF530Q6P9A1 599 aaPredicted RBP17.44■□□□□ 0.38
PTPRN-210ENST00000460801 F6X3S4 739 aa17.43■□□□□ 0.38
PTPRN-210ENST00000460801 BMP2KLQ5H9B9 411 aa17.43■□□□□ 0.38
PTPRN-210ENST00000460801 NBR1Q14596 966 aa17.43■□□□□ 0.38
PTPRN-210ENST00000460801 CADPS2Q86UW7 1296 aa17.43■□□□□ 0.38
PTPRN-210ENST00000460801 KDM3BQ7LBC6 1761 aa17.42■□□□□ 0.38
PTPRN-210ENST00000460801 RGPD5Q99666 1765 aa17.42■□□□□ 0.38
PTPRN-210ENST00000460801 HSPA2P54652 639 aa17.41■□□□□ 0.38
PTPRN-210ENST00000460801 SLC4A10Q6U841 1118 aa17.41■□□□□ 0.38
PTPRN-210ENST00000460801 EIF4A1P60842 406 aaKnown RBP17.41■□□□□ 0.38
PTPRN-210ENST00000460801 OVOS2A0A0G2JMS6 1433 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms