RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 R3HDM1Q15032 1099 aaKnown RBP23.72■■□□□ 1.39
USP39-208ENST00000455732 BTAF1O14981 1849 aa23.72■■□□□ 1.39
USP39-208ENST00000455732 KCNQ2O43526 872 aa23.71■■□□□ 1.39
USP39-208ENST00000455732 MORC1Q86VD1 984 aa23.7■■□□□ 1.38
USP39-208ENST00000455732 USHBP1Q8N6Y0 703 aa23.7■■□□□ 1.38
USP39-208ENST00000455732 NPC1L1Q9UHC9 1359 aa23.69■■□□□ 1.38
USP39-208ENST00000455732 NCAPD2Q15021 1401 aa23.68■■□□□ 1.38
USP39-208ENST00000455732 PPM1GO15355 546 aaPredicted RBP23.68■■□□□ 1.38
USP39-208ENST00000455732 TNNT2P45379 298 aaPredicted RBP23.68■■□□□ 1.38
USP39-208ENST00000455732 PROM2Q8N271 834 aa23.68■■□□□ 1.38
USP39-208ENST00000455732 DDX54Q8TDD1 881 aaKnown RBP23.68■■□□□ 1.38
USP39-208ENST00000455732 ACSBG1Q96GR2 724 aa23.68■■□□□ 1.38
USP39-208ENST00000455732 ZCRB1Q8TBF4 217 aaKnown RBP23.67■■□□□ 1.38
USP39-208ENST00000455732 DOT1LQ8TEK3 1739 aa23.67■■□□□ 1.38
USP39-208ENST00000455732 RAPGEF4Q8WZA2 1011 aa23.65■■□□□ 1.38
USP39-208ENST00000455732 PKD1L3Q7Z443 1732 aa23.64■■□□□ 1.38
USP39-208ENST00000455732 NBPF14Q5TI25 921 aa23.64■■□□□ 1.37
USP39-208ENST00000455732 TATP17735 454 aaPredicted RBP23.62■■□□□ 1.37
USP39-208ENST00000455732 TXNRD1Q16881 649 aa23.62■■□□□ 1.37
USP39-208ENST00000455732 EYA1Q99502 592 aa23.61■■□□□ 1.37
USP39-208ENST00000455732 EIF4A2Q14240 407 aaKnown RBP23.6■■□□□ 1.37
USP39-208ENST00000455732 ANO8Q9HCE9 1232 aaPredicted RBP23.59■■□□□ 1.37
USP39-208ENST00000455732 CC2D1BQ5T0F9 858 aaKnown RBP23.58■■□□□ 1.37
USP39-208ENST00000455732 PLEKHG2Q9H7P9 1386 aa23.57■■□□□ 1.36
USP39-208ENST00000455732 LY75O60449 1722 aa23.57■■□□□ 1.36
USP39-208ENST00000455732 ZEB1P37275 1124 aaPredicted RBP23.57■■□□□ 1.36
USP39-208ENST00000455732 PAPPAQ13219 1627 aa23.57■■□□□ 1.36
USP39-208ENST00000455732 PCDH11XQ9BZA7 1347 aa23.57■■□□□ 1.36
USP39-208ENST00000455732 PCDH11YQ9BZA8 1340 aa23.57■■□□□ 1.36
USP39-208ENST00000455732 CASZ1Q86V15 1759 aa23.56■■□□□ 1.36
USP39-208ENST00000455732 PRIM1P49642 420 aaKnown RBP23.56■■□□□ 1.36
USP39-208ENST00000455732 ITGB4P16144 1822 aa23.56■■□□□ 1.36
USP39-208ENST00000455732 IGSF1Q8N6C5 1336 aa23.56■■□□□ 1.36
USP39-208ENST00000455732 CYP27B1O15528 508 aa23.55■■□□□ 1.36
USP39-208ENST00000455732 TOGARAM1Q9Y4F4 1720 aa23.55■■□□□ 1.36
USP39-208ENST00000455732 SYTL4Q96C24 671 aaPredicted RBP23.53■■□□□ 1.36
USP39-208ENST00000455732 MTHFSP49914 203 aa23.51■■□□□ 1.35
USP39-208ENST00000455732 LRRC4BQ9NT99 713 aa23.51■■□□□ 1.35
USP39-208ENST00000455732 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.51■■□□□ 1.359e-7■□□□□ 8.5
USP39-208ENST00000455732 SLC15A2Q16348 729 aa23.49■■□□□ 1.35
USP39-208ENST00000455732 SPG7Q9UQ90 795 aa23.49■■□□□ 1.35
USP39-208ENST00000455732 IL13P35225 146 aa23.48■■□□□ 1.35
USP39-208ENST00000455732 NKX1-1Q15270 411 aaPredicted RBP23.48■■□□□ 1.35
USP39-208ENST00000455732 STK32BQ9NY57 414 aa23.48■■□□□ 1.35
USP39-208ENST00000455732 SLC27A3Q5K4L6 730 aa23.47■■□□□ 1.35
USP39-208ENST00000455732 PDGFDQ9GZP0 370 aaPredicted RBP23.47■■□□□ 1.35
USP39-208ENST00000455732 KDRP35968 1356 aa23.47■■□□□ 1.35
USP39-208ENST00000455732 QSER1Q2KHR3 1735 aa23.47■■□□□ 1.35
USP39-208ENST00000455732 COL3A1P02461 1466 aaPredicted RBP23.45■■□□□ 1.34
USP39-208ENST00000455732 TUBGCP6Q96RT7 1819 aa23.45■■□□□ 1.34
USP39-208ENST00000455732 TAF1LQ8IZX4 1826 aa23.43■■□□□ 1.34
USP39-208ENST00000455732 ZNF827Q17R98 1081 aa23.43■■□□□ 1.34
USP39-208ENST00000455732 SPON1Q9HCB6 807 aa23.43■■□□□ 1.34
USP39-208ENST00000455732 PPP1R1BQ9UD71 204 aaPredicted RBP23.43■■□□□ 1.34
USP39-208ENST00000455732 PHKG2P15735 406 aa23.42■■□□□ 1.34
USP39-208ENST00000455732 CNGB1Q14028 1251 aaPredicted RBP23.42■■□□□ 1.34
USP39-208ENST00000455732 IFNL2Q8IZJ0 200 aa23.42■■□□□ 1.34
USP39-208ENST00000455732 DIAPH1O60610 1272 aaKnown RBP23.41■■□□□ 1.34
USP39-208ENST00000455732 KCNQ4P56696 695 aa23.41■■□□□ 1.34
USP39-208ENST00000455732 MPRIPQ6WCQ1 1025 aa23.41■■□□□ 1.34
USP39-208ENST00000455732 AEBP1Q8IUX7 1158 aa23.41■■□□□ 1.34
USP39-208ENST00000455732 AKT1S1Q96B36 256 aa23.41■■□□□ 1.34
USP39-208ENST00000455732 SULT6B1Q6IMI4 303 aa23.4■■□□□ 1.34
USP39-208ENST00000455732 C5P01031 1676 aa23.4■■□□□ 1.34
USP39-208ENST00000455732 AMOTQ4VCS5 1084 aa23.38■■□□□ 1.33
USP39-208ENST00000455732 PIGBQ92521 554 aa23.38■■□□□ 1.33
USP39-208ENST00000455732 CCNL1Q9UK58 526 aaPredicted RBP23.38■■□□□ 1.33
USP39-208ENST00000455732 ZBTB7AO95365 584 aa23.37■■□□□ 1.33
USP39-208ENST00000455732 PPP2R1AP30153 589 aa23.37■■□□□ 1.33
USP39-208ENST00000455732 PLEKHO1Q53GL0 409 aaPredicted RBP23.37■■□□□ 1.33
USP39-208ENST00000455732 PALLDQ8WX93 1383 aa23.37■■□□□ 1.33
USP39-208ENST00000455732 VIRMAQ69YN4 1812 aaKnown RBP23.34■■□□□ 1.33
USP39-208ENST00000455732 PTGER2P43116 358 aa23.34■■□□□ 1.33
USP39-208ENST00000455732 SMARCC1Q92922 1105 aaPredicted RBP23.34■■□□□ 1.33
USP39-208ENST00000455732 CFAP53Q96M91 514 aa23.34■■□□□ 1.33
USP39-208ENST00000455732 COL24A1Q17RW2 1714 aa23.33■■□□□ 1.33
USP39-208ENST00000455732 DDX10Q13206 875 aaKnown RBP23.33■■□□□ 1.33
USP39-208ENST00000455732 MTFR1LQ9H019 292 aa23.33■■□□□ 1.33
USP39-208ENST00000455732 TMOD3Q9NYL9 352 aa23.33■■□□□ 1.33
USP39-208ENST00000455732 KDM6AO15550 1401 aaPredicted RBP23.33■■□□□ 1.32
USP39-208ENST00000455732 SCN11AQ9UI33 1791 aa23.32■■□□□ 1.32
USP39-208ENST00000455732 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
USP39-208ENST00000455732 ZNF530Q6P9A1 599 aaPredicted RBP23.32■■□□□ 1.32
USP39-208ENST00000455732 ATF5Q9Y2D1 282 aaPredicted RBP23.32■■□□□ 1.32
USP39-208ENST00000455732 PNPLA7Q6ZV29 1317 aa23.32■■□□□ 1.32
USP39-208ENST00000455732 DCAF5Q96JK2 942 aa23.31■■□□□ 1.32
USP39-208ENST00000455732 SGIP1Q9BQI5 828 aa23.31■■□□□ 1.32
USP39-208ENST00000455732 ERVV-2B6SEH9 535 aa23.3■■□□□ 1.32
USP39-208ENST00000455732 HMOX1P09601 288 aa23.3■■□□□ 1.32
USP39-208ENST00000455732 TFCP2L1Q9NZI6 479 aa23.3■■□□□ 1.32
USP39-208ENST00000455732 C4BP0C0L5 1744 aa23.3■■□□□ 1.32
USP39-208ENST00000455732 ASAP1Q9ULH1 1129 aa23.29■■□□□ 1.32
USP39-208ENST00000455732 UBR3Q6ZT12 1888 aa23.28■■□□□ 1.32
USP39-208ENST00000455732 DCAF8L1A6NGE4 600 aa23.28■■□□□ 1.32
USP39-208ENST00000455732 U2SURPO15042 1029 aaKnown RBP23.27■■□□□ 1.32
USP39-208ENST00000455732 HMGB2P26583 209 aaKnown RBP23.27■■□□□ 1.32
USP39-208ENST00000455732 RALBP1Q15311 655 aa23.27■■□□□ 1.32
USP39-208ENST00000455732 C1orf141Q5JVX7 400 aa23.27■■□□□ 1.32
USP39-208ENST00000455732 SLC16A10Q8TF71 515 aa23.27■■□□□ 1.32
USP39-208ENST00000455732 ZNF831Q5JPB2 1677 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms