RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 RGPD4Q7Z3J3 1758 aa22.12■■□□□ 1.13
SMPD4-214ENST00000455548 SHANK3Q9BYB0 1731 aa22.11■■□□□ 1.13
SMPD4-214ENST00000455548 NHSQ6T4R5 1651 aa22.11■■□□□ 1.13
SMPD4-214ENST00000455548 EZH2Q15910 746 aaKnown RBP22.1■■□□□ 1.13
SMPD4-214ENST00000455548 CC2D1BQ5T0F9 858 aaKnown RBP22.1■■□□□ 1.13
SMPD4-214ENST00000455548 EYA1Q99502 592 aa22.1■■□□□ 1.13
SMPD4-214ENST00000455548 RREB1Q92766 1687 aa22.09■■□□□ 1.13
SMPD4-214ENST00000455548 PLSCR1O15162 318 aa22.08■■□□□ 1.13
SMPD4-214ENST00000455548 PKD1L3Q7Z443 1732 aa22.06■■□□□ 1.12
SMPD4-214ENST00000455548 ZEB1P37275 1124 aaPredicted RBP22.06■■□□□ 1.12
SMPD4-214ENST00000455548 PTF1AQ7RTS3 328 aa22.06■■□□□ 1.12
SMPD4-214ENST00000455548 ACSBG1Q96GR2 724 aa22.06■■□□□ 1.12
SMPD4-214ENST00000455548 PCDH11XQ9BZA7 1347 aa22.06■■□□□ 1.12
SMPD4-214ENST00000455548 PCDH11YQ9BZA8 1340 aa22.06■■□□□ 1.12
SMPD4-214ENST00000455548 KCNQ2O43526 872 aa22.05■■□□□ 1.12
SMPD4-214ENST00000455548 IGSF1Q8N6C5 1336 aa22.05■■□□□ 1.12
SMPD4-214ENST00000455548 PLEKHG2Q9H7P9 1386 aa22.04■■□□□ 1.12
SMPD4-214ENST00000455548 NUP188Q5SRE5 1749 aa22.04■■□□□ 1.12
SMPD4-214ENST00000455548 BTAF1O14981 1849 aa22.03■■□□□ 1.12
SMPD4-214ENST00000455548 DOT1LQ8TEK3 1739 aa22.03■■□□□ 1.12
SMPD4-214ENST00000455548 MTHFSP49914 203 aa22.03■■□□□ 1.12
SMPD4-214ENST00000455548 CNGB1Q14028 1251 aaPredicted RBP22.02■■□□□ 1.12
SMPD4-214ENST00000455548 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.02■■□□□ 1.12
SMPD4-214ENST00000455548 SPG7Q9UQ90 795 aa22.02■■□□□ 1.12
SMPD4-214ENST00000455548 NBPF14Q5TI25 921 aa21.99■■□□□ 1.11
SMPD4-214ENST00000455548 CYP27B1O15528 508 aa21.98■■□□□ 1.11
SMPD4-214ENST00000455548 IL13P35225 146 aa21.98■■□□□ 1.11
SMPD4-214ENST00000455548 PRIM1P49642 420 aaKnown RBP21.98■■□□□ 1.11
SMPD4-214ENST00000455548 SYTL4Q96C24 671 aaPredicted RBP21.97■■□□□ 1.11
SMPD4-214ENST00000455548 PSDA5PKW4 1024 aaPredicted RBP21.95■■□□□ 1.1
SMPD4-214ENST00000455548 R3HDM1Q15032 1099 aaKnown RBP21.95■■□□□ 1.1
SMPD4-214ENST00000455548 TXNRD1Q16881 649 aa21.95■■□□□ 1.1
SMPD4-214ENST00000455548 KDRP35968 1356 aa21.95■■□□□ 1.1
SMPD4-214ENST00000455548 DIAPH1O60610 1272 aaKnown RBP21.94■■□□□ 1.1
SMPD4-214ENST00000455548 NKX1-1Q15270 411 aaPredicted RBP21.94■■□□□ 1.1
SMPD4-214ENST00000455548 SULT6B1Q6IMI4 303 aa21.94■■□□□ 1.1
SMPD4-214ENST00000455548 PROM2Q8N271 834 aa21.94■■□□□ 1.1
SMPD4-214ENST00000455548 AMOTQ4VCS5 1084 aa21.93■■□□□ 1.1
SMPD4-214ENST00000455548 PLEKHO1Q53GL0 409 aaPredicted RBP21.93■■□□□ 1.1
SMPD4-214ENST00000455548 IFNL2Q8IZJ0 200 aa21.93■■□□□ 1.1
SMPD4-214ENST00000455548 AEBP1Q8IUX7 1158 aa21.92■■□□□ 1.1
SMPD4-214ENST00000455548 ITGB4P16144 1822 aa21.92■■□□□ 1.1
SMPD4-214ENST00000455548 TOGARAM1Q9Y4F4 1720 aa21.92■■□□□ 1.1
SMPD4-214ENST00000455548 COL3A1P02461 1466 aaPredicted RBP21.91■■□□□ 1.1
SMPD4-214ENST00000455548 PHKG2P15735 406 aa21.91■■□□□ 1.1
SMPD4-214ENST00000455548 CFAP53Q96M91 514 aa21.91■■□□□ 1.1
SMPD4-214ENST00000455548 SRCAPQ6ZRS2 3230 aa21.89■■□□□ 1.09
SMPD4-214ENST00000455548 LY75O60449 1722 aa21.89■■□□□ 1.09
SMPD4-214ENST00000455548 HSP90AB1P08238 724 aaKnown RBP21.88■■□□□ 1.09
SMPD4-214ENST00000455548 PPP2R1AP30153 589 aa21.88■■□□□ 1.09
SMPD4-214ENST00000455548 SLC27A3Q5K4L6 730 aa21.88■■□□□ 1.09
SMPD4-214ENST00000455548 ZNF530Q6P9A1 599 aaPredicted RBP21.88■■□□□ 1.09
SMPD4-214ENST00000455548 ANO8Q9HCE9 1232 aaPredicted RBP21.87■■□□□ 1.09
SMPD4-214ENST00000455548 DDX10Q13206 875 aaKnown RBP21.86■■□□□ 1.09
SMPD4-214ENST00000455548 MPRIPQ6WCQ1 1025 aa21.86■■□□□ 1.09
SMPD4-214ENST00000455548 STK32BQ9NY57 414 aa21.86■■□□□ 1.09
SMPD4-214ENST00000455548 HMOX1P09601 288 aa21.85■■□□□ 1.09
SMPD4-214ENST00000455548 C1orf141Q5JVX7 400 aa21.85■■□□□ 1.09
SMPD4-214ENST00000455548 LRP5O75197 1615 aa21.84■■□□□ 1.09
SMPD4-214ENST00000455548 PAPPAQ13219 1627 aa21.84■■□□□ 1.09
SMPD4-214ENST00000455548 U2SURPO15042 1029 aaKnown RBP21.84■■□□□ 1.09
SMPD4-214ENST00000455548 DCAF5Q96JK2 942 aa21.84■■□□□ 1.09
SMPD4-214ENST00000455548 PIGBQ92521 554 aa21.83■■□□□ 1.09
SMPD4-214ENST00000455548 SMARCC1Q92922 1105 aaPredicted RBP21.83■■□□□ 1.09
SMPD4-214ENST00000455548 LRRC4BQ9NT99 713 aa21.83■■□□□ 1.09
SMPD4-214ENST00000455548 TMOD3Q9NYL9 352 aa21.83■■□□□ 1.09
SMPD4-214ENST00000455548 NUDCQ9Y266 331 aa21.83■■□□□ 1.09
SMPD4-214ENST00000455548 ERVV-2B6SEH9 535 aa21.82■■□□□ 1.08
SMPD4-214ENST00000455548 SLC15A2Q16348 729 aa21.82■■□□□ 1.08
SMPD4-214ENST00000455548 HMGB2P26583 209 aaKnown RBP21.81■■□□□ 1.08
SMPD4-214ENST00000455548 PALLDQ8WX93 1383 aa21.81■■□□□ 1.08
SMPD4-214ENST00000455548 CCNL1Q9UK58 526 aaPredicted RBP21.8■■□□□ 1.08
SMPD4-214ENST00000455548 AKAP4Q5JQC9 854 aa21.79■■□□□ 1.08
SMPD4-214ENST00000455548 KDM6AO15550 1401 aaPredicted RBP21.79■■□□□ 1.08
SMPD4-214ENST00000455548 RALBP1Q15311 655 aa21.78■■□□□ 1.08
SMPD4-214ENST00000455548 CASZ1Q86V15 1759 aa21.78■■□□□ 1.08
SMPD4-214ENST00000455548 SCN11AQ9UI33 1791 aa21.78■■□□□ 1.08
SMPD4-214ENST00000455548 KCNQ4P56696 695 aa21.76■■□□□ 1.07
SMPD4-214ENST00000455548 CABP4P57796 275 aa21.76■■□□□ 1.07
SMPD4-214ENST00000455548 QSER1Q2KHR3 1735 aa21.76■■□□□ 1.07
SMPD4-214ENST00000455548 TAF1LQ8IZX4 1826 aa21.76■■□□□ 1.07
SMPD4-214ENST00000455548 C5P01031 1676 aa21.75■■□□□ 1.07
SMPD4-214ENST00000455548 ZNF827Q17R98 1081 aa21.75■■□□□ 1.07
SMPD4-214ENST00000455548 AKT1S1Q96B36 256 aa21.75■■□□□ 1.07
SMPD4-214ENST00000455548 VIRMAQ69YN4 1812 aaKnown RBP21.75■■□□□ 1.07
SMPD4-214ENST00000455548 U2AF1L5P0DN76 240 aaPredicted RBP21.74■■□□□ 1.07
SMPD4-214ENST00000455548 U2AF1Q01081 240 aaKnown RBP eCLIP21.74■■□□□ 1.07
SMPD4-214ENST00000455548 MTHFSDQ2M296 383 aaKnown RBP21.74■■□□□ 1.07
SMPD4-214ENST00000455548 ASAP1Q9ULH1 1129 aa21.74■■□□□ 1.07
SMPD4-214ENST00000455548 RSPH6AQ9H0K4 717 aa21.73■■□□□ 1.07
SMPD4-214ENST00000455548 SPON1Q9HCB6 807 aa21.73■■□□□ 1.07
SMPD4-214ENST00000455548 TUBGCP6Q96RT7 1819 aa21.72■■□□□ 1.07
SMPD4-214ENST00000455548 PRKAR2BP31323 418 aa21.72■■□□□ 1.07
SMPD4-214ENST00000455548 GAS2L2Q8NHY3 880 aa21.72■■□□□ 1.07
SMPD4-214ENST00000455548 LOC102724428A0A0B4J2F2 783 aa21.71■■□□□ 1.07
SMPD4-214ENST00000455548 FCHSD2O94868 740 aa21.71■■□□□ 1.07
SMPD4-214ENST00000455548 SIK1P57059 783 aa21.71■■□□□ 1.07
SMPD4-214ENST00000455548 ATG3Q9NT62 314 aa21.71■■□□□ 1.07
SMPD4-214ENST00000455548 TFCP2L1Q9NZI6 479 aa21.71■■□□□ 1.07
SMPD4-214ENST00000455548 ADAMTS7Q9UKP4 1686 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms