RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 NBPF4Q96M43 638 aa16.63■□□□□ 0.25
USP40-210ENST00000454354 EMILIN1Q9Y6C2 1016 aa16.63■□□□□ 0.25
USP40-210ENST00000454354 KCNQ2O43526 872 aa16.62■□□□□ 0.25
USP40-210ENST00000454354 PROM2Q8N271 834 aa16.61■□□□□ 0.25
USP40-210ENST00000454354 QSER1Q2KHR3 1735 aa16.61■□□□□ 0.25
USP40-210ENST00000454354 TOGARAM1Q9Y4F4 1720 aa16.6■□□□□ 0.25
USP40-210ENST00000454354 ACSBG1Q96GR2 724 aa16.6■□□□□ 0.25
USP40-210ENST00000454354 PANK3Q9H999 370 aa16.6■□□□□ 0.25
USP40-210ENST00000454354 ITGB4P16144 1822 aa16.6■□□□□ 0.25
USP40-210ENST00000454354 WASHC2AQ641Q2 1341 aa16.6■□□□□ 0.25
USP40-210ENST00000454354 USHBP1Q8N6Y0 703 aa16.59■□□□□ 0.25
USP40-210ENST00000454354 ZCRB1Q8TBF4 217 aaKnown RBP16.59■□□□□ 0.25
USP40-210ENST00000454354 TXNRD1Q16881 649 aa16.58■□□□□ 0.24
USP40-210ENST00000454354 DDX54Q8TDD1 881 aaKnown RBP16.58■□□□□ 0.24
USP40-210ENST00000454354 ANO8Q9HCE9 1232 aaPredicted RBP16.58■□□□□ 0.24
USP40-210ENST00000454354 POLKQ9UBT6 870 aa16.58■□□□□ 0.24
USP40-210ENST00000454354 TUBGCP6Q96RT7 1819 aa16.57■□□□□ 0.24
USP40-210ENST00000454354 KIF7Q2M1P5 1343 aa16.57■□□□□ 0.24
USP40-210ENST00000454354 RAPGEF4Q8WZA2 1011 aa16.57■□□□□ 0.24
USP40-210ENST00000454354 TATP17735 454 aaPredicted RBP16.56■□□□□ 0.24
USP40-210ENST00000454354 PLEKHG2Q9H7P9 1386 aa16.55■□□□□ 0.24
USP40-210ENST00000454354 PCDH11XQ9BZA7 1347 aa16.54■□□□□ 0.24
USP40-210ENST00000454354 PCDH11YQ9BZA8 1340 aa16.54■□□□□ 0.24
USP40-210ENST00000454354 PPM1GO15355 546 aaPredicted RBP16.54■□□□□ 0.24
USP40-210ENST00000454354 TAF1LQ8IZX4 1826 aa16.54■□□□□ 0.24
USP40-210ENST00000454354 EYA1Q99502 592 aa16.52■□□□□ 0.24
USP40-210ENST00000454354 COL24A1Q17RW2 1714 aa16.51■□□□□ 0.23
USP40-210ENST00000454354 C5P01031 1676 aa16.51■□□□□ 0.23
USP40-210ENST00000454354 TNNT2P45379 298 aaPredicted RBP16.51■□□□□ 0.23
USP40-210ENST00000454354 SLC15A2Q16348 729 aa16.51■□□□□ 0.23
USP40-210ENST00000454354 STK32BQ9NY57 414 aa16.51■□□□□ 0.23
USP40-210ENST00000454354 KNSTRNQ9Y448 316 aa16.51■□□□□ 0.23
USP40-210ENST00000454354 PRIM1P49642 420 aaKnown RBP16.5■□□□□ 0.23
USP40-210ENST00000454354 EIF4A2Q14240 407 aaKnown RBP16.5■□□□□ 0.23
USP40-210ENST00000454354 AMER1Q5JTC6 1135 aaPredicted RBP16.5■□□□□ 0.23
USP40-210ENST00000454354 IGSF1Q8N6C5 1336 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 CYP27B1O15528 508 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 SLC27A3Q5K4L6 730 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 MORC1Q86VD1 984 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 SPON1Q9HCB6 807 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 LRRC4BQ9NT99 713 aa16.49■□□□□ 0.23
USP40-210ENST00000454354 SYTL4Q96C24 671 aaPredicted RBP16.48■□□□□ 0.23
USP40-210ENST00000454354 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.48■□□□□ 0.231e-6■□□□□ 10.8
USP40-210ENST00000454354 NKX1-1Q15270 411 aaPredicted RBP16.47■□□□□ 0.23
USP40-210ENST00000454354 VIRMAQ69YN4 1812 aaKnown RBP16.47■□□□□ 0.23
USP40-210ENST00000454354 PER1O15534 1290 aaPredicted RBP16.46■□□□□ 0.23
USP40-210ENST00000454354 PDGFDQ9GZP0 370 aaPredicted RBP16.46■□□□□ 0.23
USP40-210ENST00000454354 SPG7Q9UQ90 795 aa16.46■□□□□ 0.23
USP40-210ENST00000454354 ZNF827Q17R98 1081 aa16.45■□□□□ 0.22
USP40-210ENST00000454354 NPC1L1Q9UHC9 1359 aa16.45■□□□□ 0.22
USP40-210ENST00000454354 AKT1S1Q96B36 256 aa16.44■□□□□ 0.22
USP40-210ENST00000454354 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
USP40-210ENST00000454354 KDRP35968 1356 aa16.42■□□□□ 0.22
USP40-210ENST00000454354 UBR3Q6ZT12 1888 aa16.42■□□□□ 0.22
USP40-210ENST00000454354 SCN11AQ9UI33 1791 aa16.42■□□□□ 0.22
USP40-210ENST00000454354 C4BP0C0L5 1744 aa16.42■□□□□ 0.22
USP40-210ENST00000454354 PALLDQ8WX93 1383 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 ZBTB7AO95365 584 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 PHKG2P15735 406 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 PTGER2P43116 358 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 IFNL2Q8IZJ0 200 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 MTFR1LQ9H019 292 aa16.41■□□□□ 0.22
USP40-210ENST00000454354 CCNL1Q9UK58 526 aaPredicted RBP16.41■□□□□ 0.22
USP40-210ENST00000454354 SGIP1Q9BQI5 828 aa16.4■□□□□ 0.22
USP40-210ENST00000454354 PPP1R1BQ9UD71 204 aaPredicted RBP16.4■□□□□ 0.22
USP40-210ENST00000454354 IL13P35225 146 aa16.39■□□□□ 0.21
USP40-210ENST00000454354 KCNQ4P56696 695 aa16.39■□□□□ 0.21
USP40-210ENST00000454354 MPRIPQ6WCQ1 1025 aa16.39■□□□□ 0.21
USP40-210ENST00000454354 PNPLA7Q6ZV29 1317 aa16.39■□□□□ 0.21
USP40-210ENST00000454354 COL3A1P02461 1466 aaPredicted RBP16.38■□□□□ 0.21
USP40-210ENST00000454354 PIGBQ92521 554 aa16.38■□□□□ 0.21
USP40-210ENST00000454354 SMARCC1Q92922 1105 aaPredicted RBP16.38■□□□□ 0.21
USP40-210ENST00000454354 COL5A3P25940 1745 aaPredicted RBP16.37■□□□□ 0.21
USP40-210ENST00000454354 HMGB2P26583 209 aaKnown RBP16.37■□□□□ 0.21
USP40-210ENST00000454354 AMOTQ4VCS5 1084 aa16.37■□□□□ 0.21
USP40-210ENST00000454354 AEBP1Q8IUX7 1158 aa16.37■□□□□ 0.21
USP40-210ENST00000454354 SLC16A10Q8TF71 515 aa16.37■□□□□ 0.21
USP40-210ENST00000454354 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
USP40-210ENST00000454354 ADAMTS7Q9UKP4 1686 aa16.37■□□□□ 0.21
USP40-210ENST00000454354 KDM6AO15550 1401 aaPredicted RBP16.36■□□□□ 0.21
USP40-210ENST00000454354 MTHFSP49914 203 aa16.36■□□□□ 0.21
USP40-210ENST00000454354 PLEKHO1Q53GL0 409 aaPredicted RBP16.36■□□□□ 0.21
USP40-210ENST00000454354 CC2D1BQ5T0F9 858 aaKnown RBP16.36■□□□□ 0.21
USP40-210ENST00000454354 TFCP2L1Q9NZI6 479 aa16.36■□□□□ 0.21
USP40-210ENST00000454354 CICQ96RK0 1608 aaPredicted RBP16.36■□□□□ 0.21
USP40-210ENST00000454354 TMOD3Q9NYL9 352 aa16.35■□□□□ 0.21
USP40-210ENST00000454354 HSP90AB1P08238 724 aaKnown RBP16.34■□□□□ 0.21
USP40-210ENST00000454354 SULT6B1Q6IMI4 303 aa16.34■□□□□ 0.21
USP40-210ENST00000454354 ZNF530Q6P9A1 599 aaPredicted RBP16.34■□□□□ 0.21
USP40-210ENST00000454354 MAP3K5Q99683 1374 aa16.34■□□□□ 0.21
USP40-210ENST00000454354 ERVV-2B6SEH9 535 aa16.33■□□□□ 0.2
USP40-210ENST00000454354 DCAF5Q96JK2 942 aa16.33■□□□□ 0.2
USP40-210ENST00000454354 MRC1P22897 1456 aa16.31■□□□□ 0.2
USP40-210ENST00000454354 ASAP1Q9ULH1 1129 aa16.31■□□□□ 0.2
USP40-210ENST00000454354 TJP1Q07157 1748 aa16.31■□□□□ 0.2
USP40-210ENST00000454354 MYH14Q7Z406 1995 aaKnown RBP16.3■□□□□ 0.2
USP40-210ENST00000454354 LOC102724428A0A0B4J2F2 783 aa16.3■□□□□ 0.2
USP40-210ENST00000454354 DIAPH1O60610 1272 aaKnown RBP16.3■□□□□ 0.2
USP40-210ENST00000454354 SIK1P57059 783 aa16.3■□□□□ 0.2
USP40-210ENST00000454354 ARXQ96QS3 562 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms