RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 ADAMTS2O95450 1211 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 CABLES1Q8TDN4 633 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 OTUD5Q96G74 571 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 PRDM11Q9NQV5 511 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 NFAT5O94916 1531 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 KIF24Q5T7B8 1368 aa11.89□□□□□ -0.51
COL28A1-205ENST00000453441 PER1O15534 1290 aaPredicted RBP11.88□□□□□ -0.51
COL28A1-205ENST00000453441 ZNF772Q68DY9 489 aaPredicted RBP11.88□□□□□ -0.51
COL28A1-205ENST00000453441 FNBP4Q8N3X1 1017 aaPredicted RBP11.88□□□□□ -0.51
COL28A1-205ENST00000453441 NGLY1Q96IV0 654 aa11.88□□□□□ -0.51
COL28A1-205ENST00000453441 AATKQ6ZMQ8 1374 aa11.88□□□□□ -0.51
COL28A1-205ENST00000453441 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.88□□□□□ -0.51
COL28A1-205ENST00000453441 SLIT2O94813 1529 aa11.87□□□□□ -0.51
COL28A1-205ENST00000453441 C8orf37Q96NL8 207 aa11.87□□□□□ -0.51
COL28A1-205ENST00000453441 GGNBP2Q9H3C7 697 aa11.87□□□□□ -0.51
COL28A1-205ENST00000453441 KIAA0232Q92628 1395 aa11.87□□□□□ -0.51
COL28A1-205ENST00000453441 PLCH1Q4KWH8 1693 aa11.87□□□□□ -0.51
COL28A1-205ENST00000453441 ARHGEF25Q86VW2 580 aa11.86□□□□□ -0.51
COL28A1-205ENST00000453441 RTL1A6NKG5 1358 aa11.86□□□□□ -0.51
COL28A1-205ENST00000453441 LMO7Q8WWI1 1683 aa11.85□□□□□ -0.51
COL28A1-205ENST00000453441 BLMP54132 1417 aaPredicted RBP11.85□□□□□ -0.51
COL28A1-205ENST00000453441 AFF2P51816 1311 aa11.85□□□□□ -0.51
COL28A1-205ENST00000453441 LTN1O94822 1766 aa11.84□□□□□ -0.51
COL28A1-205ENST00000453441 FAM83GA6ND36 823 aa11.84□□□□□ -0.51
COL28A1-205ENST00000453441 ZC3H6P61129 1189 aaKnown RBP11.84□□□□□ -0.51
COL28A1-205ENST00000453441 USP21Q9UK80 565 aa11.84□□□□□ -0.51
COL28A1-205ENST00000453441 COL18A1P39060 1754 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 DPY19L2Q6NUT2 758 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 MORC1Q86VD1 984 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 UNC5CLQ8IV45 518 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 TRPC5Q9UL62 973 aaPredicted RBP11.83□□□□□ -0.52
COL28A1-205ENST00000453441 NRAPQ86VF7 1730 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 BCL9LQ86UU0 1499 aa11.83□□□□□ -0.52
COL28A1-205ENST00000453441 G3V3G9 751 aa11.82□□□□□ -0.52
COL28A1-205ENST00000453441 FBXO22Q8NEZ5 403 aa11.82□□□□□ -0.52
COL28A1-205ENST00000453441 MFRPQ9BY79 579 aa11.82□□□□□ -0.52
COL28A1-205ENST00000453441 BTG4Q9NY30 223 aa11.82□□□□□ -0.52
COL28A1-205ENST00000453441 FLT4P35916 1363 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 ATRNO75882 1429 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 SMG6Q86US8 1419 aaKnown RBP11.81□□□□□ -0.52
COL28A1-205ENST00000453441 AMPHP49418 695 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 DDX10Q13206 875 aaKnown RBP11.81□□□□□ -0.52
COL28A1-205ENST00000453441 VPS72Q15906 364 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 IP6K1Q92551 441 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 COL5A2P05997 1499 aaPredicted RBP11.81□□□□□ -0.52
COL28A1-205ENST00000453441 MAP3K19Q56UN5 1328 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 FAM208AQ9UK61 1670 aaKnown RBP11.81□□□□□ -0.52
COL28A1-205ENST00000453441 CAMTA1Q9Y6Y1 1673 aa11.81□□□□□ -0.52
COL28A1-205ENST00000453441 CHRNA2Q15822 529 aa11.8□□□□□ -0.52
COL28A1-205ENST00000453441 MS4A4AQ96JQ5 239 aa11.8□□□□□ -0.52
COL28A1-205ENST00000453441 BOLA1Q9Y3E2 137 aa11.8□□□□□ -0.52
COL28A1-205ENST00000453441 MAP2P11137 1827 aaKnown RBP11.8□□□□□ -0.52
COL28A1-205ENST00000453441 ZBTB7CA1YPR0 619 aa11.79□□□□□ -0.52
COL28A1-205ENST00000453441 HOXC9P31274 260 aa11.79□□□□□ -0.52
COL28A1-205ENST00000453441 EVA1CP58658 441 aa11.79□□□□□ -0.52
COL28A1-205ENST00000453441 CC2D1BQ5T0F9 858 aaKnown RBP11.79□□□□□ -0.52
COL28A1-205ENST00000453441 WDR17Q8IZU2 1322 aa11.79□□□□□ -0.52
COL28A1-205ENST00000453441 INSRP06213 1382 aa11.79□□□□□ -0.52
COL28A1-205ENST00000453441 CDK12Q9NYV4 1490 aaPredicted RBP11.78□□□□□ -0.52
COL28A1-205ENST00000453441 RBM6P78332 1123 aaKnown RBP11.78□□□□□ -0.52
COL28A1-205ENST00000453441 RALBP1Q15311 655 aa11.78□□□□□ -0.52
COL28A1-205ENST00000453441 QTRT2Q9H974 415 aaKnown RBP11.78□□□□□ -0.52
COL28A1-205ENST00000453441 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.78□□□□□ -0.52
COL28A1-205ENST00000453441 CRB1P82279 1406 aa11.77□□□□□ -0.52
COL28A1-205ENST00000453441 RRS1Q15050 365 aaKnown RBP11.77□□□□□ -0.53
COL28A1-205ENST00000453441 C3orf67Q6ZVT6 689 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 POLKQ9UBT6 870 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 RGS17Q9UGC6 210 aaPredicted RBP11.77□□□□□ -0.53
COL28A1-205ENST00000453441 THRAP3Q9Y2W1 955 aaKnown RBP11.77□□□□□ -0.53
COL28A1-205ENST00000453441 ERBB3P21860 1342 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 SPATA31A5Q5VU36 1347 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 SPATA31A7Q8IWB4 1347 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 PARD3Q8TEW0 1356 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 RGPD5Q99666 1765 aa11.77□□□□□ -0.53
COL28A1-205ENST00000453441 RXRBP28702 533 aa11.76□□□□□ -0.53
COL28A1-205ENST00000453441 GJD4Q96KN9 370 aaPredicted RBP11.76□□□□□ -0.53
COL28A1-205ENST00000453441 TMEM121BQ9BXQ6 578 aaPredicted RBP11.76□□□□□ -0.53
COL28A1-205ENST00000453441 STRN4Q9NRL3 753 aa11.76□□□□□ -0.53
COL28A1-205ENST00000453441 RYDENQ9NUL5 291 aaKnown RBP11.76□□□□□ -0.53
COL28A1-205ENST00000453441 AXIN2Q9Y2T1 843 aa11.76□□□□□ -0.53
COL28A1-205ENST00000453441 PEAK1Q9H792 1746 aa11.76□□□□□ -0.53
COL28A1-205ENST00000453441 CSB-PGBD3P0DP91 1061 aa11.75□□□□□ -0.53
COL28A1-205ENST00000453441 TNNT2P45379 298 aaPredicted RBP11.75□□□□□ -0.53
COL28A1-205ENST00000453441 ANKRD24Q8TF21 1146 aa11.75□□□□□ -0.53
COL28A1-205ENST00000453441 CDCA7Q9BWT1 371 aaPredicted RBP11.75□□□□□ -0.53
COL28A1-205ENST00000453441 CARD10Q9BWT7 1032 aa11.75□□□□□ -0.53
COL28A1-205ENST00000453441 CCDC9Q9Y3X0 531 aaKnown RBP11.75□□□□□ -0.53
COL28A1-205ENST00000453441 EMILIN1Q9Y6C2 1016 aa11.75□□□□□ -0.53
COL28A1-205ENST00000453441 SPATA31A1Q5TZJ5 1347 aa11.75□□□□□ -0.53
COL28A1-205ENST00000453441 BARGINQ6ZT62 677 aa11.74□□□□□ -0.53
COL28A1-205ENST00000453441 TOM1L2Q6ZVM7 507 aa11.74□□□□□ -0.53
COL28A1-205ENST00000453441 CFAP53Q96M91 514 aa11.74□□□□□ -0.53
COL28A1-205ENST00000453441 PLEKHG2Q9H7P9 1386 aa11.74□□□□□ -0.53
COL28A1-205ENST00000453441 PPM1GO15355 546 aaPredicted RBP11.73□□□□□ -0.53
COL28A1-205ENST00000453441 GLI3P10071 1580 aa11.73□□□□□ -0.53
COL28A1-205ENST00000453441 LARP1Q6PKG0 1096 aaKnown RBP11.73□□□□□ -0.53
COL28A1-205ENST00000453441 POTEAQ6S8J7 498 aa11.73□□□□□ -0.53
COL28A1-205ENST00000453441 TCP11L2Q8N4U5 519 aa11.73□□□□□ -0.53
COL28A1-205ENST00000453441 SLAIN1Q8ND83 568 aa11.73□□□□□ -0.53
COL28A1-205ENST00000453441 ONECUT3O60422 494 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms