RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 GAS2L2Q8NHY3 880 aa19.24■□□□□ 0.67
TNF-208ENST00000449264 IL2RBP14784 551 aa19.22■□□□□ 0.67
TNF-208ENST00000449264 PLEKHO1Q53GL0 409 aaPredicted RBP19.22■□□□□ 0.67
TNF-208ENST00000449264 SPATA31A1Q5TZJ5 1347 aa19.22■□□□□ 0.67
TNF-208ENST00000449264 OVOS2A0A0G2JMS6 1433 aa19.22■□□□□ 0.67
TNF-208ENST00000449264 SPATA31A5Q5VU36 1347 aa19.21■□□□□ 0.67
TNF-208ENST00000449264 SPATA31A7Q8IWB4 1347 aa19.21■□□□□ 0.67
TNF-208ENST00000449264 NGEFQ8N5V2 710 aa19.21■□□□□ 0.67
TNF-208ENST00000449264 AMOTQ4VCS5 1084 aa19.2■□□□□ 0.66
TNF-208ENST00000449264 ZNF530Q6P9A1 599 aaPredicted RBP19.2■□□□□ 0.66
TNF-208ENST00000449264 VIRMAQ69YN4 1812 aaKnown RBP19.2■□□□□ 0.66
TNF-208ENST00000449264 VPS72Q15906 364 aa19.2■□□□□ 0.66
TNF-208ENST00000449264 WWC1Q8IX03 1113 aa19.2■□□□□ 0.66
TNF-208ENST00000449264 TRIM35Q9UPQ4 493 aa19.2■□□□□ 0.66
TNF-208ENST00000449264 SHANK3Q9BYB0 1731 aa19.19■□□□□ 0.66
TNF-208ENST00000449264 CCDC27Q2M243 656 aa19.19■□□□□ 0.66
TNF-208ENST00000449264 DISP2A7MBM2 1401 aa19.19■□□□□ 0.66
TNF-208ENST00000449264 MAP3K5Q99683 1374 aa19.18■□□□□ 0.66
TNF-208ENST00000449264 ZNF521Q96K83 1311 aa19.18■□□□□ 0.66
TNF-208ENST00000449264 LMOD3Q0VAK6 560 aa19.18■□□□□ 0.66
TNF-208ENST00000449264 SPG7Q9UQ90 795 aa19.18■□□□□ 0.66
TNF-208ENST00000449264 PLEKHG2Q9H7P9 1386 aa19.18■□□□□ 0.66
TNF-208ENST00000449264 DCTN1Q14203 1278 aa19.17■□□□□ 0.66
TNF-208ENST00000449264 NCBP3Q53F19 620 aaKnown RBP19.17■□□□□ 0.66
TNF-208ENST00000449264 C1orf141Q5JVX7 400 aa19.17■□□□□ 0.66
TNF-208ENST00000449264 THUMPD2Q9BTF0 503 aaKnown RBP19.17■□□□□ 0.66
TNF-208ENST00000449264 THRAP3Q9Y2W1 955 aaKnown RBP19.17■□□□□ 0.66
TNF-208ENST00000449264 GNAT3A8MTJ3 354 aa19.16■□□□□ 0.66
TNF-208ENST00000449264 MCM10Q7L590 875 aa19.16■□□□□ 0.66
TNF-208ENST00000449264 RTF1Q92541 710 aaKnown RBP19.16■□□□□ 0.66
TNF-208ENST00000449264 LRRC37A3O60309 1634 aa19.15■□□□□ 0.66
TNF-208ENST00000449264 ATRNO75882 1429 aa19.15■□□□□ 0.66
TNF-208ENST00000449264 GLI3P10071 1580 aa19.15■□□□□ 0.66
TNF-208ENST00000449264 ZCRB1Q8TBF4 217 aaKnown RBP19.15■□□□□ 0.66
TNF-208ENST00000449264 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.15■□□□□ 0.66
TNF-208ENST00000449264 CENPBP07199 599 aaPredicted RBP19.14■□□□□ 0.66
TNF-208ENST00000449264 GOLGA2Q08379 1002 aa19.14■□□□□ 0.66
TNF-208ENST00000449264 AKAP4Q5JQC9 854 aa19.14■□□□□ 0.66
TNF-208ENST00000449264 CDCA7LQ96GN5 454 aa19.14■□□□□ 0.66
TNF-208ENST00000449264 PCDH11XQ9BZA7 1347 aa19.14■□□□□ 0.65
TNF-208ENST00000449264 PCDH11YQ9BZA8 1340 aa19.14■□□□□ 0.65
TNF-208ENST00000449264 FAM98CQ17RN3 349 aaKnown RBP19.14■□□□□ 0.65
TNF-208ENST00000449264 TRPC5Q9UL62 973 aaPredicted RBP19.14■□□□□ 0.65
TNF-208ENST00000449264 TNS2Q63HR2 1409 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 A0A0G2JS52 829 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 PHKG2P15735 406 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 MYT1Q01538 1121 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 PDE3BQ13370 1112 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 BARGINQ6ZT62 677 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 WDR63Q8IWG1 891 aa19.12■□□□□ 0.65
TNF-208ENST00000449264 CDCA7Q9BWT1 371 aaPredicted RBP19.12■□□□□ 0.65
TNF-208ENST00000449264 CYP27B1O15528 508 aa19.11■□□□□ 0.65
TNF-208ENST00000449264 MPRIPQ6WCQ1 1025 aa19.11■□□□□ 0.65
TNF-208ENST00000449264 IFNL2Q8IZJ0 200 aa19.11■□□□□ 0.65
TNF-208ENST00000449264 DDX54Q8TDD1 881 aaKnown RBP19.11■□□□□ 0.65
TNF-208ENST00000449264 GJD4Q96KN9 370 aaPredicted RBP19.11■□□□□ 0.65
TNF-208ENST00000449264 SPINK5Q9NQ38 1064 aaPredicted RBP19.11■□□□□ 0.65
TNF-208ENST00000449264 SCN11AQ9UI33 1791 aa19.11■□□□□ 0.65
TNF-208ENST00000449264 HTATSF1O43719 755 aaKnown RBP19.11■□□□□ 0.65
TNF-208ENST00000449264 QTRT2Q9H974 415 aaKnown RBP19.11■□□□□ 0.65
TNF-208ENST00000449264 LAS1LQ9Y4W2 734 aaKnown RBP19.1■□□□□ 0.65
TNF-208ENST00000449264 THSD7AQ9UPZ6 1657 aa19.1■□□□□ 0.65
TNF-208ENST00000449264 ADAMTS7Q9UKP4 1686 aa19.09■□□□□ 0.65
TNF-208ENST00000449264 CALD1Q05682 793 aaKnown RBP19.09■□□□□ 0.65
TNF-208ENST00000449264 DDB1Q16531 1140 aa19.09■□□□□ 0.65
TNF-208ENST00000449264 ZNF772Q68DY9 489 aaPredicted RBP19.09■□□□□ 0.65
TNF-208ENST00000449264 KDM6AO15550 1401 aaPredicted RBP19.08■□□□□ 0.65
TNF-208ENST00000449264 E9PSI1 815 aa19.08■□□□□ 0.65
TNF-208ENST00000449264 EXOC5O00471 708 aa19.08■□□□□ 0.65
TNF-208ENST00000449264 IL17REQ8NFR9 667 aa19.08■□□□□ 0.65
TNF-208ENST00000449264 LGR6Q9HBX8 967 aa19.08■□□□□ 0.65
TNF-208ENST00000449264 SLFN5Q08AF3 891 aa19.08■□□□□ 0.64
TNF-208ENST00000449264 RNMTO43148 476 aaKnown RBP19.07■□□□□ 0.64
TNF-208ENST00000449264 ILDR1Q86SU0 546 aaPredicted RBP19.07■□□□□ 0.64
TNF-208ENST00000449264 IL16Q14005 1332 aa19.07■□□□□ 0.64
TNF-208ENST00000449264 CEMIPQ8WUJ3 1361 aa19.06■□□□□ 0.64
TNF-208ENST00000449264 HSP90AB1P08238 724 aaKnown RBP19.06■□□□□ 0.64
TNF-208ENST00000449264 TSR2Q969E8 191 aaKnown RBP19.06■□□□□ 0.64
TNF-208ENST00000449264 KAT6BQ8WYB5 2073 aa19.06■□□□□ 0.64
TNF-208ENST00000449264 TOGARAM1Q9Y4F4 1720 aa19.06■□□□□ 0.64
TNF-208ENST00000449264 MYH16Q9H6N6 1097 aa19.05■□□□□ 0.64
TNF-208ENST00000449264 SIPA1L3O60292 1781 aaPredicted RBP19.05■□□□□ 0.64
TNF-208ENST00000449264 TEFQ10587 303 aa19.05■□□□□ 0.64
TNF-208ENST00000449264 DUSP27Q5VZP5 1158 aa19.05■□□□□ 0.64
TNF-208ENST00000449264 DCAF5Q96JK2 942 aa19.05■□□□□ 0.64
TNF-208ENST00000449264 IFT57Q9NWB7 429 aa19.05■□□□□ 0.64
TNF-208ENST00000449264 FANCIQ9NVI1 1328 aa19.04■□□□□ 0.64
TNF-208ENST00000449264 GNAI1P63096 354 aa19.04■□□□□ 0.64
TNF-208ENST00000449264 CFAP44Q96MT7 982 aa19.03■□□□□ 0.64
TNF-208ENST00000449264 DOT1LQ8TEK3 1739 aa19.03■□□□□ 0.64
TNF-208ENST00000449264 MRC1P22897 1456 aa19.02■□□□□ 0.63
TNF-208ENST00000449264 TRMT2AQ8IZ69 625 aaKnown RBP19.01■□□□□ 0.63
TNF-208ENST00000449264 MBIPQ9NS73 344 aa19.01■□□□□ 0.63
TNF-208ENST00000449264 MIS18AQ9NYP9 233 aa19.01■□□□□ 0.63
TNF-208ENST00000449264 ZNF853P0CG23 659 aa19.01■□□□□ 0.63
TNF-208ENST00000449264 NKX1-1Q15270 411 aaPredicted RBP19.01■□□□□ 0.63
TNF-208ENST00000449264 TSPYL4Q9UJ04 414 aa19.01■□□□□ 0.63
TNF-208ENST00000449264 KDM3BQ7LBC6 1761 aa19.01■□□□□ 0.63
TNF-208ENST00000449264 ITGB4P16144 1822 aa19■□□□□ 0.63
TNF-208ENST00000449264 RBM6P78332 1123 aaKnown RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms