RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 ZNF827Q17R98 1081 aa39.39■■■■□ 3.9
CBX4-202ENST00000448310 TIMELESSQ9UNS1 1208 aa39.39■■■■□ 3.9
CBX4-202ENST00000448310 SMG6Q86US8 1419 aaKnown RBP39.39■■■■□ 3.9
CBX4-202ENST00000448310 NSD3Q9BZ95 1437 aa39.39■■■■□ 3.9
CBX4-202ENST00000448310 PRIM1P49642 420 aaKnown RBP39.38■■■■□ 3.89
CBX4-202ENST00000448310 HSP90AB2PQ58FF8 381 aa39.37■■■■□ 3.89
CBX4-202ENST00000448310 MTFR1LQ9H019 292 aa39.36■■■■□ 3.89
CBX4-202ENST00000448310 INSRP06213 1382 aa39.34■■■■□ 3.89
CBX4-202ENST00000448310 NSD2O96028 1365 aa39.33■■■■□ 3.89
CBX4-202ENST00000448310 FLT4P35916 1363 aa39.33■■■■□ 3.89
CBX4-202ENST00000448310 KCNQ4P56696 695 aa39.32■■■■□ 3.89
CBX4-202ENST00000448310 CLSPNQ9HAW4 1339 aa39.32■■■■□ 3.88
CBX4-202ENST00000448310 LY75O60449 1722 aa39.31■■■■□ 3.88
CBX4-202ENST00000448310 RAPGEF4Q8WZA2 1011 aa39.31■■■■□ 3.88
CBX4-202ENST00000448310 DCAF8L1A6NGE4 600 aa39.3■■■■□ 3.88
CBX4-202ENST00000448310 SLC27A3Q5K4L6 730 aa39.3■■■■□ 3.88
CBX4-202ENST00000448310 AKT1S1Q96B36 256 aa39.29■■■■□ 3.88
CBX4-202ENST00000448310 SGIP1Q9BQI5 828 aa39.29■■■■□ 3.88
CBX4-202ENST00000448310 EMILIN1Q9Y6C2 1016 aa39.29■■■■□ 3.88
CBX4-202ENST00000448310 TUBGCP6Q96RT7 1819 aa39.28■■■■□ 3.88
CBX4-202ENST00000448310 YY1P25490 414 aa39.28■■■■□ 3.88
CBX4-202ENST00000448310 QSER1Q2KHR3 1735 aa39.28■■■■□ 3.88
CBX4-202ENST00000448310 TATP17735 454 aaPredicted RBP39.27■■■■□ 3.88
CBX4-202ENST00000448310 CGNL1Q0VF96 1302 aa39.27■■■■□ 3.88
CBX4-202ENST00000448310 KIF24Q5T7B8 1368 aa39.27■■■■□ 3.88
CBX4-202ENST00000448310 FHDC1Q9C0D6 1143 aaPredicted RBP39.26■■■■□ 3.88
CBX4-202ENST00000448310 POLR3GLQ9BT43 218 aa39.25■■■■□ 3.87
CBX4-202ENST00000448310 MAP2P11137 1827 aaKnown RBP39.24■■■■□ 3.87
CBX4-202ENST00000448310 ANKRD26Q9UPS8 1709 aa39.23■■■■□ 3.87
CBX4-202ENST00000448310 PPM1GO15355 546 aaPredicted RBP39.21■■■■□ 3.87
CBX4-202ENST00000448310 SYT17Q9BSW7 474 aa39.21■■■■□ 3.87
CBX4-202ENST00000448310 PNPLA7Q6ZV29 1317 aa39.18■■■■□ 3.86
CBX4-202ENST00000448310 ARXQ96QS3 562 aa39.18■■■■□ 3.86
CBX4-202ENST00000448310 PCDH11XQ9BZA7 1347 aa39.17■■■■□ 3.86
CBX4-202ENST00000448310 PCDH11YQ9BZA8 1340 aa39.17■■■■□ 3.86
CBX4-202ENST00000448310 CCNL1Q9UK58 526 aaPredicted RBP39.17■■■■□ 3.86
CBX4-202ENST00000448310 TFCP2L1Q9NZI6 479 aa39.16■■■■□ 3.86
CBX4-202ENST00000448310 PKD1L3Q7Z443 1732 aa39.15■■■■□ 3.86
CBX4-202ENST00000448310 TOGARAM1Q9Y4F4 1720 aa39.14■■■■□ 3.86
CBX4-202ENST00000448310 ITGB4P16144 1822 aa39.12■■■■□ 3.85
CBX4-202ENST00000448310 CYP27B1O15528 508 aa39.12■■■■□ 3.85
CBX4-202ENST00000448310 COL24A1Q17RW2 1714 aa39.11■■■■□ 3.85
CBX4-202ENST00000448310 NCAPD2Q15021 1401 aa39.1■■■■□ 3.85
CBX4-202ENST00000448310 SLC16A10Q8TF71 515 aa39.1■■■■□ 3.85
CBX4-202ENST00000448310 WASHC2AQ641Q2 1341 aa39.1■■■■□ 3.85
CBX4-202ENST00000448310 HSPA5P11021 654 aaKnown RBP39.08■■■■□ 3.85
CBX4-202ENST00000448310 C5P01031 1676 aa39.08■■■■□ 3.85
CBX4-202ENST00000448310 EIF4G2P78344 907 aaKnown RBP eCLIP39.07■■■■□ 3.85
CBX4-202ENST00000448310 MPRIPQ6WCQ1 1025 aa39.07■■■■□ 3.85
CBX4-202ENST00000448310 POLKQ9UBT6 870 aa39.07■■■■□ 3.85
CBX4-202ENST00000448310 TNNT2P45379 298 aaPredicted RBP39.06■■■■□ 3.84
CBX4-202ENST00000448310 EYA1Q99502 592 aa39.05■■■■□ 3.84
CBX4-202ENST00000448310 TAF1LQ8IZX4 1826 aa39.05■■■■□ 3.84
CBX4-202ENST00000448310 CCER1Q8TC90 406 aaPredicted RBP39.04■■■■□ 3.84
CBX4-202ENST00000448310 MAP3K5Q99683 1374 aa39.04■■■■□ 3.84
CBX4-202ENST00000448310 POLD1P28340 1107 aa39.03■■■■□ 3.84
CBX4-202ENST00000448310 KLHL34Q8N239 644 aa39.03■■■■□ 3.84
CBX4-202ENST00000448310 PALLDQ8WX93 1383 aa39.03■■■■□ 3.84
CBX4-202ENST00000448310 UTRNP46939 3433 aa39.01■■■■□ 3.84
CBX4-202ENST00000448310 MSH5O43196 834 aa39■■■■□ 3.83
CBX4-202ENST00000448310 COL23A1Q86Y22 540 aaPredicted RBP38.99■■■■□ 3.83
CBX4-202ENST00000448310 PANK3Q9H999 370 aa38.98■■■■□ 3.83
CBX4-202ENST00000448310 SPG7Q9UQ90 795 aa38.98■■■■□ 3.83
CBX4-202ENST00000448310 CHD4Q14839 1912 aa38.97■■■■□ 3.83
CBX4-202ENST00000448310 EIF4A2Q14240 407 aaKnown RBP38.95■■■■□ 3.83
CBX4-202ENST00000448310 NKX1-1Q15270 411 aaPredicted RBP38.94■■■■□ 3.82
CBX4-202ENST00000448310 PIGBQ92521 554 aa38.94■■■■□ 3.82
CBX4-202ENST00000448310 C4BP0C0L5 1744 aa38.91■■■■□ 3.82
CBX4-202ENST00000448310 MSL1Q68DK7 614 aa38.9■■■■□ 3.82
CBX4-202ENST00000448310 SMARCC1Q92922 1105 aaPredicted RBP38.9■■■■□ 3.82
CBX4-202ENST00000448310 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP38.89■■■■□ 3.82
CBX4-202ENST00000448310 GPR162Q16538 588 aa38.87■■■■□ 3.81
CBX4-202ENST00000448310 NLGN2Q8NFZ4 835 aa38.87■■■■□ 3.81
CBX4-202ENST00000448310 PHKG2P15735 406 aa38.86■■■■□ 3.81
CBX4-202ENST00000448310 IFNL2Q8IZJ0 200 aa38.85■■■■□ 3.81
CBX4-202ENST00000448310 UBR3Q6ZT12 1888 aa38.84■■■■□ 3.81
CBX4-202ENST00000448310 PELP1Q8IZL8 1130 aaKnown RBP38.83■■■■□ 3.81
CBX4-202ENST00000448310 TMOD3Q9NYL9 352 aa38.83■■■■□ 3.81
CBX4-202ENST00000448310 AK7Q96M32 723 aa38.82■■■■□ 3.8
CBX4-202ENST00000448310 IGSF1Q8N6C5 1336 aa38.82■■■■□ 3.8
CBX4-202ENST00000448310 AMIGO3Q86WK7 504 aa38.81■■■■□ 3.8
CBX4-202ENST00000448310 ZNF784Q8NCA9 323 aaPredicted RBP38.81■■■■□ 3.8
CBX4-202ENST00000448310 HMGB2P26583 209 aaKnown RBP38.8■■■■□ 3.8
CBX4-202ENST00000448310 SMIM5Q71RC9 77 aa38.8■■■■□ 3.8
CBX4-202ENST00000448310 ASAP1Q9ULH1 1129 aa38.8■■■■□ 3.8
CBX4-202ENST00000448310 FLAD1Q8NFF5 587 aa38.79■■■■□ 3.8
CBX4-202ENST00000448310 LOC102724428A0A0B4J2F2 783 aa38.78■■■■□ 3.8
CBX4-202ENST00000448310 SIK1P57059 783 aa38.78■■■■□ 3.8
CBX4-202ENST00000448310 MORC1Q86VD1 984 aa38.78■■■■□ 3.8
CBX4-202ENST00000448310 PHF14O94880 888 aa38.76■■■■□ 3.8
CBX4-202ENST00000448310 LINC00116Q8NCU8 138 aa38.76■■■■□ 3.8
CBX4-202ENST00000448310 GOLGB1Q14789 3259 aaKnown RBP38.74■■■■□ 3.79
CBX4-202ENST00000448310 PLEKHG2Q9H7P9 1386 aa38.72■■■■□ 3.79
CBX4-202ENST00000448310 ITPK1Q13572 414 aa38.72■■■■□ 3.79
CBX4-202ENST00000448310 ATG3Q9NT62 314 aa38.72■■■■□ 3.79
CBX4-202ENST00000448310 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP38.71■■■■□ 3.79
CBX4-202ENST00000448310 KNSTRNQ9Y448 316 aa38.71■■■■□ 3.79
CBX4-202ENST00000448310 ATP6V1AP38606 617 aa38.7■■■■□ 3.79
CBX4-202ENST00000448310 AEBP1Q8IUX7 1158 aa38.69■■■■□ 3.78
CBX4-202ENST00000448310 PLEKHO1Q53GL0 409 aaPredicted RBP38.68■■■■□ 3.78
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms