RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 PCDH11YQ9BZA8 1340 aa22.13■■□□□ 1.13
SF3A1-204ENST00000447376 MTHFSP49914 203 aa22.12■■□□□ 1.13
SF3A1-204ENST00000447376 SPG7Q9UQ90 795 aa22.12■■□□□ 1.13
SF3A1-204ENST00000447376 SBF2Q86WG5 1849 aa22.12■■□□□ 1.13
SF3A1-204ENST00000447376 NCAPD2Q15021 1401 aa22.1■■□□□ 1.13
SF3A1-204ENST00000447376 EZH2Q15910 746 aaKnown RBP22.1■■□□□ 1.13
SF3A1-204ENST00000447376 ACSBG1Q96GR2 724 aa22.1■■□□□ 1.13
SF3A1-204ENST00000447376 CAMKK2Q96RR4 588 aa22.09■■□□□ 1.13
SF3A1-204ENST00000447376 IGSF1Q8N6C5 1336 aa22.08■■□□□ 1.13
SF3A1-204ENST00000447376 PLSCR1O15162 318 aa22.08■■□□□ 1.13
SF3A1-204ENST00000447376 CFAP53Q96M91 514 aa22.08■■□□□ 1.13
SF3A1-204ENST00000447376 PLEKHG2Q9H7P9 1386 aa22.08■■□□□ 1.12
SF3A1-204ENST00000447376 NHSQ6T4R5 1651 aa22.07■■□□□ 1.12
SF3A1-204ENST00000447376 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
SF3A1-204ENST00000447376 SYTL4Q96C24 671 aaPredicted RBP22.07■■□□□ 1.12
SF3A1-204ENST00000447376 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.07■■□□□ 1.129e-7■□□□□ 9.7
SF3A1-204ENST00000447376 DIAPH1O60610 1272 aaKnown RBP22.06■■□□□ 1.12
SF3A1-204ENST00000447376 NBPF14Q5TI25 921 aa22.06■■□□□ 1.12
SF3A1-204ENST00000447376 RGPD3A6NKT7 1758 aaPredicted RBP22.05■■□□□ 1.12
SF3A1-204ENST00000447376 RGPD4Q7Z3J3 1758 aa22.05■■□□□ 1.12
SF3A1-204ENST00000447376 DDX10Q13206 875 aaKnown RBP22.05■■□□□ 1.12
SF3A1-204ENST00000447376 KAT6BQ8WYB5 2073 aa22.05■■□□□ 1.12
SF3A1-204ENST00000447376 KCNQ2O43526 872 aa22.04■■□□□ 1.12
SF3A1-204ENST00000447376 PKD1L3Q7Z443 1732 aa22.03■■□□□ 1.12
SF3A1-204ENST00000447376 SHANK3Q9BYB0 1731 aa22.03■■□□□ 1.12
SF3A1-204ENST00000447376 IL13P35225 146 aa22.03■■□□□ 1.12
SF3A1-204ENST00000447376 PLEKHO1Q53GL0 409 aaPredicted RBP22.03■■□□□ 1.12
SF3A1-204ENST00000447376 AMOTQ4VCS5 1084 aa22.02■■□□□ 1.12
SF3A1-204ENST00000447376 SULT6B1Q6IMI4 303 aa22.02■■□□□ 1.12
SF3A1-204ENST00000447376 DOT1LQ8TEK3 1739 aa22.01■■□□□ 1.11
SF3A1-204ENST00000447376 IFNL2Q8IZJ0 200 aa22.01■■□□□ 1.11
SF3A1-204ENST00000447376 PRIM1P49642 420 aaKnown RBP22■■□□□ 1.11
SF3A1-204ENST00000447376 PTF1AQ7RTS3 328 aa22■■□□□ 1.11
SF3A1-204ENST00000447376 RREB1Q92766 1687 aa22■■□□□ 1.11
SF3A1-204ENST00000447376 CYP27B1O15528 508 aa21.99■■□□□ 1.11
SF3A1-204ENST00000447376 NUDCQ9Y266 331 aa21.99■■□□□ 1.11
SF3A1-204ENST00000447376 U2SURPO15042 1029 aaKnown RBP21.98■■□□□ 1.11
SF3A1-204ENST00000447376 HSP90AB1P08238 724 aaKnown RBP21.98■■□□□ 1.11
SF3A1-204ENST00000447376 C1orf141Q5JVX7 400 aa21.98■■□□□ 1.11
SF3A1-204ENST00000447376 BTAF1O14981 1849 aa21.98■■□□□ 1.11
SF3A1-204ENST00000447376 PPP2R1AP30153 589 aa21.97■■□□□ 1.11
SF3A1-204ENST00000447376 AEBP1Q8IUX7 1158 aa21.97■■□□□ 1.11
SF3A1-204ENST00000447376 KDRP35968 1356 aa21.97■■□□□ 1.11
SF3A1-204ENST00000447376 TXNRD1Q16881 649 aa21.96■■□□□ 1.11
SF3A1-204ENST00000447376 ZNF530Q6P9A1 599 aaPredicted RBP21.96■■□□□ 1.11
SF3A1-204ENST00000447376 NUP188Q5SRE5 1749 aa21.96■■□□□ 1.11
SF3A1-204ENST00000447376 PHKG2P15735 406 aa21.95■■□□□ 1.1
SF3A1-204ENST00000447376 R3HDM1Q15032 1099 aaKnown RBP21.95■■□□□ 1.1
SF3A1-204ENST00000447376 NKX1-1Q15270 411 aaPredicted RBP21.95■■□□□ 1.1
SF3A1-204ENST00000447376 PSDA5PKW4 1024 aaPredicted RBP21.94■■□□□ 1.1
SF3A1-204ENST00000447376 HMOX1P09601 288 aa21.94■■□□□ 1.1
SF3A1-204ENST00000447376 HMGB2P26583 209 aaKnown RBP21.94■■□□□ 1.1
SF3A1-204ENST00000447376 RALBP1Q15311 655 aa21.93■■□□□ 1.1
SF3A1-204ENST00000447376 MPRIPQ6WCQ1 1025 aa21.93■■□□□ 1.1
SF3A1-204ENST00000447376 SLC27A3Q5K4L6 730 aa21.92■■□□□ 1.1
SF3A1-204ENST00000447376 STK32BQ9NY57 414 aa21.92■■□□□ 1.1
SF3A1-204ENST00000447376 TMOD3Q9NYL9 352 aa21.92■■□□□ 1.1
SF3A1-204ENST00000447376 COL3A1P02461 1466 aaPredicted RBP21.91■■□□□ 1.1
SF3A1-204ENST00000447376 DCAF5Q96JK2 942 aa21.91■■□□□ 1.1
SF3A1-204ENST00000447376 SMARCC1Q92922 1105 aaPredicted RBP21.9■■□□□ 1.1
SF3A1-204ENST00000447376 PROM2Q8N271 834 aa21.88■■□□□ 1.09
SF3A1-204ENST00000447376 ERVV-2B6SEH9 535 aa21.87■■□□□ 1.09
SF3A1-204ENST00000447376 U2AF1L5P0DN76 240 aaPredicted RBP21.87■■□□□ 1.09
SF3A1-204ENST00000447376 U2AF1Q01081 240 aaKnown RBP eCLIP21.87■■□□□ 1.09
SF3A1-204ENST00000447376 TOGARAM1Q9Y4F4 1720 aa21.86■■□□□ 1.09
SF3A1-204ENST00000447376 NEFMP07197 916 aa21.86■■□□□ 1.09
SF3A1-204ENST00000447376 AKAP4Q5JQC9 854 aa21.86■■□□□ 1.09
SF3A1-204ENST00000447376 CCNL1Q9UK58 526 aaPredicted RBP21.86■■□□□ 1.09
SF3A1-204ENST00000447376 ITGB4P16144 1822 aa21.85■■□□□ 1.09
SF3A1-204ENST00000447376 PALLDQ8WX93 1383 aa21.85■■□□□ 1.09
SF3A1-204ENST00000447376 CABP4P57796 275 aa21.84■■□□□ 1.09
SF3A1-204ENST00000447376 SLC15A2Q16348 729 aa21.84■■□□□ 1.09
SF3A1-204ENST00000447376 GAS2L2Q8NHY3 880 aa21.84■■□□□ 1.09
SF3A1-204ENST00000447376 PIGBQ92521 554 aa21.84■■□□□ 1.09
SF3A1-204ENST00000447376 MYBBP1AQ9BQG0 1328 aaKnown RBP21.82■■□□□ 1.08
SF3A1-204ENST00000447376 ANO8Q9HCE9 1232 aaPredicted RBP21.82■■□□□ 1.08
SF3A1-204ENST00000447376 LY75O60449 1722 aa21.82■■□□□ 1.08
SF3A1-204ENST00000447376 FCHSD2O94868 740 aa21.81■■□□□ 1.08
SF3A1-204ENST00000447376 PRKAR2BP31323 418 aa21.81■■□□□ 1.08
SF3A1-204ENST00000447376 PNNQ9H307 717 aaKnown RBP21.81■■□□□ 1.08
SF3A1-204ENST00000447376 MTHFSDQ2M296 383 aaKnown RBP21.8■■□□□ 1.08
SF3A1-204ENST00000447376 LRRC4BQ9NT99 713 aa21.8■■□□□ 1.08
SF3A1-204ENST00000447376 KDM6AO15550 1401 aaPredicted RBP21.79■■□□□ 1.08
SF3A1-204ENST00000447376 RSPH6AQ9H0K4 717 aa21.78■■□□□ 1.08
SF3A1-204ENST00000447376 TFCP2L1Q9NZI6 479 aa21.78■■□□□ 1.08
SF3A1-204ENST00000447376 PAPPAQ13219 1627 aa21.77■■□□□ 1.07
SF3A1-204ENST00000447376 MAP3K5Q99683 1374 aa21.76■■□□□ 1.07
SF3A1-204ENST00000447376 GNAT3A8MTJ3 354 aa21.76■■□□□ 1.07
SF3A1-204ENST00000447376 KCNQ4P56696 695 aa21.76■■□□□ 1.07
SF3A1-204ENST00000447376 ASAP1Q9ULH1 1129 aa21.76■■□□□ 1.07
SF3A1-204ENST00000447376 SCN11AQ9UI33 1791 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 LOC102724428A0A0B4J2F2 783 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 RNMTO43148 476 aaKnown RBP21.75■■□□□ 1.07
SF3A1-204ENST00000447376 SIK1P57059 783 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 NFATC2IPQ8NCF5 419 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 PRKRIP1Q9H875 184 aaPredicted RBP21.75■■□□□ 1.07
SF3A1-204ENST00000447376 SPON1Q9HCB6 807 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 LRP5O75197 1615 aa21.75■■□□□ 1.07
SF3A1-204ENST00000447376 TEFQ10587 303 aa21.74■■□□□ 1.07
SF3A1-204ENST00000447376 RTF1Q92541 710 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms