RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZSCAN23Q3MJ62 389 aa14.43□□□□□ -0.1
MSH6-204ENST00000445503 SHROOM2Q13796 1616 aa14.43□□□□□ -0.1
MSH6-204ENST00000445503 UHRF1BP1LA0JNW5 1464 aa14.43□□□□□ -0.1
MSH6-204ENST00000445503 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
MSH6-204ENST00000445503 XPCQ01831 940 aaPredicted RBP14.43□□□□□ -0.1
MSH6-204ENST00000445503 G2E3Q7L622 706 aa14.43□□□□□ -0.1
MSH6-204ENST00000445503 KIAA2012Q0VF49 1180 aa14.42□□□□□ -0.1
MSH6-204ENST00000445503 EFCAB6Q5THR3 1501 aa14.42□□□□□ -0.1
MSH6-204ENST00000445503 ZMYM3Q14202 1370 aa14.42□□□□□ -0.1
MSH6-204ENST00000445503 CCT4P50991 539 aaKnown RBP14.42□□□□□ -0.1
MSH6-204ENST00000445503 GNAI3P08754 354 aa14.42□□□□□ -0.1
MSH6-204ENST00000445503 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.42□□□□□ -0.1
MSH6-204ENST00000445503 GOLGA6L4A6NEF3 574 aa14.41□□□□□ -0.1
MSH6-204ENST00000445503 PRIM1P49642 420 aaKnown RBP14.41□□□□□ -0.1
MSH6-204ENST00000445503 CCDC30Q5VVM6 783 aa14.41□□□□□ -0.1
MSH6-204ENST00000445503 NAP1L2Q9ULW6 460 aaPredicted RBP14.41□□□□□ -0.1
MSH6-204ENST00000445503 MX1P20591 662 aa14.41□□□□□ -0.1
MSH6-204ENST00000445503 DDX54Q8TDD1 881 aaKnown RBP14.41□□□□□ -0.1
MSH6-204ENST00000445503 DTNBO60941 627 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 PDE1AP54750 535 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 TMX3Q96JJ7 454 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 DIAPH3Q9NSV4 1193 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 CEP152O94986 1710 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 ABCC4O15439 1325 aa14.4□□□□□ -0.1
MSH6-204ENST00000445503 LRRFIP2Q9Y608 721 aaKnown RBP14.4□□□□□ -0.1
MSH6-204ENST00000445503 VPS37CA5D8V6 355 aaPredicted RBP14.39□□□□□ -0.11
MSH6-204ENST00000445503 FIBPO43427 364 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 FGD1P98174 961 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 CCDC9Q9Y3X0 531 aaKnown RBP14.39□□□□□ -0.11
MSH6-204ENST00000445503 IQSEC2Q5JU85 1478 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 HDGFL1Q5TGJ6 251 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 EID1Q9Y6B2 187 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 NLRP1Q9C000 1473 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 KIF2CQ99661 725 aa14.39□□□□□ -0.11
MSH6-204ENST00000445503 POGZQ7Z3K3 1410 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 MSH6P52701 1360 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 ACEP12821 1306 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 MBD3O95983 291 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 DRC7Q8IY82 874 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 USHBP1Q8N6Y0 703 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 UBE2Q2Q8WVN8 375 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.38□□□□□ -0.11
MSH6-204ENST00000445503 PHF14O94880 888 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 RBSNQ9H1K0 784 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 TSPY26PQ9H489 355 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 SMC3Q9UQE7 1217 aa14.38□□□□□ -0.11
MSH6-204ENST00000445503 ERBB4Q15303 1308 aa14.37□□□□□ -0.11
MSH6-204ENST00000445503 ZFYVE9O95405 1425 aa14.37□□□□□ -0.11
MSH6-204ENST00000445503 FLIIQ13045 1269 aa14.37□□□□□ -0.11
MSH6-204ENST00000445503 CWC27Q6UX04 472 aaKnown RBP14.37□□□□□ -0.11
MSH6-204ENST00000445503 C9orf78Q9NZ63 289 aaPredicted RBP14.37□□□□□ -0.11
MSH6-204ENST00000445503 MYOM1P52179 1685 aa14.37□□□□□ -0.11
MSH6-204ENST00000445503 SRGAP3O43295 1099 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 TPM2P07951 284 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 TEFQ10587 303 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 MTHFSDQ2M296 383 aaKnown RBP14.36□□□□□ -0.11
MSH6-204ENST00000445503 RIMS2Q9UQ26 1411 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 PTPRCP08575 1304 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 MCM2P49736 904 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 TULP4Q9NRJ4 1543 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 QRICH2Q9H0J4 1663 aa14.36□□□□□ -0.11
MSH6-204ENST00000445503 RRP9O43818 475 aaKnown RBP14.35□□□□□ -0.11
MSH6-204ENST00000445503 CCDC39Q9UFE4 941 aa14.35□□□□□ -0.11
MSH6-204ENST00000445503 TTC21BQ7Z4L5 1316 aa14.35□□□□□ -0.11
MSH6-204ENST00000445503 YEATS2Q9ULM3 1422 aa14.35□□□□□ -0.11
MSH6-204ENST00000445503 ABTB2Q8N961 1025 aa14.35□□□□□ -0.11
MSH6-204ENST00000445503 LMBRD1Q9NUN5 540 aa14.35□□□□□ -0.11
MSH6-204ENST00000445503 ANXA1P04083 346 aa14.34□□□□□ -0.11
MSH6-204ENST00000445503 AIMP1Q12904 312 aaKnown RBP14.34□□□□□ -0.11
MSH6-204ENST00000445503 PPRC1Q5VV67 1664 aaKnown RBP14.34□□□□□ -0.11
MSH6-204ENST00000445503 CHL1O00533 1208 aa14.34□□□□□ -0.11
MSH6-204ENST00000445503 IFIT2P09913 472 aaKnown RBP14.34□□□□□ -0.11
MSH6-204ENST00000445503 ESYT1Q9BSJ8 1104 aa14.34□□□□□ -0.11
MSH6-204ENST00000445503 ZNF853P0CG23 659 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 ADGRB3O60242 1522 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 SRCIN1Q9C0H9 1055 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 SPG7Q9UQ90 795 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 GLI2P10070 1586 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 UQCRHLA0A096LP55 91 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 UQCRHP07919 91 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 PKNOX2Q96KN3 472 aa14.33□□□□□ -0.12
MSH6-204ENST00000445503 BCL11BQ9C0K0 894 aaPredicted RBP14.33□□□□□ -0.12
MSH6-204ENST00000445503 CNTROBQ8N137 903 aa14.32□□□□□ -0.12
MSH6-204ENST00000445503 GPATCH3Q96I76 525 aa14.32□□□□□ -0.12
MSH6-204ENST00000445503 PNMA6EA0A0J9YXQ4 647 aa14.32□□□□□ -0.12
MSH6-204ENST00000445503 GNAT3A8MTJ3 354 aa14.32□□□□□ -0.12
MSH6-204ENST00000445503 RBM33Q96EV2 1170 aaKnown RBP14.32□□□□□ -0.12
MSH6-204ENST00000445503 ZNF830Q96NB3 372 aaPredicted RBP14.32□□□□□ -0.12
MSH6-204ENST00000445503 WDR33Q9C0J8 1336 aaKnown RBP14.31□□□□□ -0.12
MSH6-204ENST00000445503 CEBPAP49715 358 aaPredicted RBP14.31□□□□□ -0.12
MSH6-204ENST00000445503 BRPF1P55201 1214 aaPredicted RBP14.31□□□□□ -0.12
MSH6-204ENST00000445503 TMEM63CQ9P1W3 806 aa14.31□□□□□ -0.12
MSH6-204ENST00000445503 CSPP1Q1MSJ5 1256 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 LRSAM1Q6UWE0 723 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 CLASRPQ8N2M8 674 aaKnown RBP14.3□□□□□ -0.12
MSH6-204ENST00000445503 SPC24Q8NBT2 197 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 PALD1Q9ULE6 856 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 ABCC3O15438 1527 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 FAM135BQ49AJ0 1406 aa14.3□□□□□ -0.12
MSH6-204ENST00000445503 FOSBP53539 338 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms