RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 IGHDP01880 384 aa13.06□□□□□ -0.32
SYNE2-206ENST00000441438 SDE2Q6IQ49 451 aa13.06□□□□□ -0.32
SYNE2-206ENST00000441438 DDRGK1Q96HY6 314 aa13.06□□□□□ -0.32
SYNE2-206ENST00000441438 HDGFL1Q5TGJ6 251 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 NEUROD6Q96NK8 337 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 SMC3Q9UQE7 1217 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 MS4A1P11836 297 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 GIPC2Q8TF65 315 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 USTQ9Y2C2 406 aa13.05□□□□□ -0.32
SYNE2-206ENST00000441438 PDILTQ8N807 584 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 BANK1Q8NDB2 785 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 CD109Q6YHK3 1445 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 RSPH1Q8WYR4 309 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 BCL2L13Q9BXK5 485 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 LRRC27Q9C0I9 530 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 TERF1P54274 439 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 PIK3R5Q8WYR1 880 aa13.04□□□□□ -0.32
SYNE2-206ENST00000441438 CDK13Q14004 1512 aaKnown RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 VDRP11473 427 aa13.03□□□□□ -0.32
SYNE2-206ENST00000441438 CCAR1Q8IX12 1150 aaKnown RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 ZNF512BQ96KM6 892 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 ZNF330Q9Y3S2 320 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 GPATCH8Q9UKJ3 1502 aaKnown RBP13.03□□□□□ -0.32
SYNE2-206ENST00000441438 PTPN23Q9H3S7 1636 aa13.03□□□□□ -0.32
SYNE2-206ENST00000441438 TBC1D12O60347 775 aa13.03□□□□□ -0.32
SYNE2-206ENST00000441438 SYNRGQ9UMZ2 1314 aa13.03□□□□□ -0.32
SYNE2-206ENST00000441438 HDLBPQ00341 1268 aaKnown RBP13.02□□□□□ -0.32
SYNE2-206ENST00000441438 TCEAL1Q15170 157 aa13.02□□□□□ -0.32
SYNE2-206ENST00000441438 KIDINS220Q9ULH0 1771 aa13.02□□□□□ -0.32
SYNE2-206ENST00000441438 MKRN1Q9UHC7 482 aaKnown RBP13.02□□□□□ -0.33
SYNE2-206ENST00000441438 TBX22Q9Y458 520 aa13.02□□□□□ -0.33
SYNE2-206ENST00000441438 NEURL4Q96JN8 1562 aa13.02□□□□□ -0.33
SYNE2-206ENST00000441438 PLEKHG6Q3KR16 790 aa13.02□□□□□ -0.33
SYNE2-206ENST00000441438 DIP2CQ9Y2E4 1556 aa13.01□□□□□ -0.33
SYNE2-206ENST00000441438 ARHGEF12Q9NZN5 1544 aa13.01□□□□□ -0.33
SYNE2-206ENST00000441438 ZFYVE16Q7Z3T8 1539 aa13.01□□□□□ -0.33
SYNE2-206ENST00000441438 LMTK2Q8IWU2 1503 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 FANCIQ9NVI1 1328 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 NAT1P18440 290 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 PCGF5Q86SE9 256 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 PIF1Q9H611 641 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 COG6Q9Y2V7 657 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 CBFA2T2O43439 604 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 TGFB3P10600 412 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 C1QTNF12Q5T7M4 302 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 ABCF2Q9UG63 623 aa13□□□□□ -0.33
SYNE2-206ENST00000441438 ITFG2Q969R8 447 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 SCINQ9Y6U3 715 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 VWDEQ8N2E2 1590 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 DENND4BO75064 1496 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-206ENST00000441438 GCC2Q8IWJ2 1684 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 GIGYF1O75420 1035 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-206ENST00000441438 SLC20A2Q08357 652 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 IL17RAQ96F46 866 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 FANCAO15360 1455 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 ZNF142P52746 1687 aaPredicted RBP12.99□□□□□ -0.33
SYNE2-206ENST00000441438 FLT3P36888 993 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 STAG1Q8WVM7 1258 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 ARPC5LQ9BPX5 153 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 SFMBT1Q9UHJ3 866 aa12.99□□□□□ -0.33
SYNE2-206ENST00000441438 CCDC144BQ3MJ40 725 aa12.98□□□□□ -0.33
SYNE2-206ENST00000441438 RPUSD2Q8IZ73 545 aaKnown RBP12.98□□□□□ -0.33
SYNE2-206ENST00000441438 CEP63Q96MT8 703 aa12.98□□□□□ -0.33
SYNE2-206ENST00000441438 DIS3Q9Y2L1 958 aaKnown RBP12.98□□□□□ -0.33
SYNE2-206ENST00000441438 COL17A1Q9UMD9 1497 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-206ENST00000441438 NCOA2Q15596 1464 aa12.98□□□□□ -0.33
SYNE2-206ENST00000441438 XPCQ01831 940 aaPredicted RBP12.98□□□□□ -0.33
SYNE2-206ENST00000441438 NT5DC4Q86YG4 428 aa12.98□□□□□ -0.33
SYNE2-206ENST00000441438 PPP4R3BQ5MIZ7 849 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 DNTTIP2Q5QJE6 756 aaKnown RBP12.97□□□□□ -0.33
SYNE2-206ENST00000441438 FMNL3Q8IVF7 1028 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 RBM19Q9Y4C8 960 aaKnown RBP12.97□□□□□ -0.33
SYNE2-206ENST00000441438 RASSF7Q02833 373 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 MUC3BQ9H195 1237 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 SPC25Q9HBM1 224 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 MBD5Q9P267 1494 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 UNC13BO14795 1591 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 RECKO95980 971 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 FAM43AQ8N2R8 423 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 AGBL1Q96MI9 1066 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 CXorf56Q9H5V9 222 aa12.97□□□□□ -0.33
SYNE2-206ENST00000441438 CAMSAP2Q08AD1 1489 aa12.96□□□□□ -0.33
SYNE2-206ENST00000441438 NPAS4Q8IUM7 802 aa12.96□□□□□ -0.33
SYNE2-206ENST00000441438 SMAP1Q8IYB5 467 aaPredicted RBP12.96□□□□□ -0.33
SYNE2-206ENST00000441438 DDX27Q96GQ7 796 aaKnown RBP12.96□□□□□ -0.33
SYNE2-206ENST00000441438 SEZ6LQ9BYH1 1024 aa12.96□□□□□ -0.33
SYNE2-206ENST00000441438 ISY1Q9ULR0 285 aaKnown RBP12.96□□□□□ -0.33
SYNE2-206ENST00000441438 ABCA6Q8N139 1617 aa12.96□□□□□ -0.33
SYNE2-206ENST00000441438 BICDL2A1A5D9 508 aa12.96□□□□□ -0.34
SYNE2-206ENST00000441438 PPP1R12AO14974 1030 aaPredicted RBP12.96□□□□□ -0.34
SYNE2-206ENST00000441438 UTP14CQ5TAP6 766 aaKnown RBP12.96□□□□□ -0.34
SYNE2-206ENST00000441438 FAM13BQ9NYF5 915 aa12.96□□□□□ -0.34
SYNE2-206ENST00000441438 ACRBPQ8NEB7 543 aa12.95□□□□□ -0.34
SYNE2-206ENST00000441438 CDC5LQ99459 802 aaKnown RBP12.95□□□□□ -0.34
SYNE2-206ENST00000441438 PDCL3Q9H2J4 239 aa12.95□□□□□ -0.34
SYNE2-206ENST00000441438 ANAPC4Q9UJX5 808 aa12.95□□□□□ -0.34
SYNE2-206ENST00000441438 MYOM3Q5VTT5 1437 aa12.95□□□□□ -0.34
SYNE2-206ENST00000441438 CSB-PGBD3P0DP91 1061 aa12.95□□□□□ -0.34
SYNE2-206ENST00000441438 PBXIP1Q96AQ6 731 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms