RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 EYA1Q99502 592 aa32.23■■■□□ 2.75
VARS-217ENST00000440048 NCAPD2Q15021 1401 aa32.23■■■□□ 2.75
VARS-217ENST00000440048 TATP17735 454 aaPredicted RBP32.22■■■□□ 2.75
VARS-217ENST00000440048 CC2D1BQ5T0F9 858 aaKnown RBP32.22■■■□□ 2.75
VARS-217ENST00000440048 NHSQ6T4R5 1651 aa32.21■■■□□ 2.75
VARS-217ENST00000440048 NPC1L1Q9UHC9 1359 aa32.19■■■□□ 2.74
VARS-217ENST00000440048 RREB1Q92766 1687 aa32.19■■■□□ 2.74
VARS-217ENST00000440048 KCNQ2O43526 872 aa32.19■■■□□ 2.74
VARS-217ENST00000440048 ACSBG1Q96GR2 724 aa32.19■■■□□ 2.74
VARS-217ENST00000440048 RGPD3A6NKT7 1758 aaPredicted RBP32.17■■■□□ 2.74
VARS-217ENST00000440048 RGPD4Q7Z3J3 1758 aa32.17■■■□□ 2.74
VARS-217ENST00000440048 PLSCR1O15162 318 aa32.16■■■□□ 2.74
VARS-217ENST00000440048 CNGB1Q14028 1251 aaPredicted RBP32.14■■■□□ 2.74
VARS-217ENST00000440048 NUP188Q5SRE5 1749 aa32.14■■■□□ 2.74
VARS-217ENST00000440048 PKD1L3Q7Z443 1732 aa32.12■■■□□ 2.73
VARS-217ENST00000440048 IGSF1Q8N6C5 1336 aa32.11■■■□□ 2.73
VARS-217ENST00000440048 MTHFSP49914 203 aa32.11■■■□□ 2.73
VARS-217ENST00000440048 BTAF1O14981 1849 aa32.1■■■□□ 2.73
VARS-217ENST00000440048 PSDA5PKW4 1024 aaPredicted RBP32.1■■■□□ 2.73
VARS-217ENST00000440048 DOT1LQ8TEK3 1739 aa32.09■■■□□ 2.73
VARS-217ENST00000440048 PCDH11XQ9BZA7 1347 aa32.09■■■□□ 2.73
VARS-217ENST00000440048 PCDH11YQ9BZA8 1340 aa32.09■■■□□ 2.73
VARS-217ENST00000440048 NBPF14Q5TI25 921 aa32.08■■■□□ 2.73
VARS-217ENST00000440048 CYP27B1O15528 508 aa32.06■■■□□ 2.72
VARS-217ENST00000440048 R3HDM1Q15032 1099 aaKnown RBP32.06■■■□□ 2.72
VARS-217ENST00000440048 IL13P35225 146 aa32.05■■■□□ 2.72
VARS-217ENST00000440048 PRIM1P49642 420 aaKnown RBP32.05■■■□□ 2.72
VARS-217ENST00000440048 PROM2Q8N271 834 aa32.05■■■□□ 2.72
VARS-217ENST00000440048 SPG7Q9UQ90 795 aa32.05■■■□□ 2.72
VARS-217ENST00000440048 LRP5O75197 1615 aa32.04■■■□□ 2.72
VARS-217ENST00000440048 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP32.03■■■□□ 2.72
VARS-217ENST00000440048 SYTL4Q96C24 671 aaPredicted RBP32.02■■■□□ 2.72
VARS-217ENST00000440048 TXNRD1Q16881 649 aa32.01■■■□□ 2.71
VARS-217ENST00000440048 AEBP1Q8IUX7 1158 aa32■■■□□ 2.71
VARS-217ENST00000440048 PLEKHG2Q9H7P9 1386 aa31.99■■■□□ 2.71
VARS-217ENST00000440048 ZEB1P37275 1124 aaPredicted RBP31.98■■■□□ 2.71
VARS-217ENST00000440048 SULT6B1Q6IMI4 303 aa31.97■■■□□ 2.71
VARS-217ENST00000440048 NKX1-1Q15270 411 aaPredicted RBP31.96■■■□□ 2.71
VARS-217ENST00000440048 TOGARAM1Q9Y4F4 1720 aa31.95■■■□□ 2.71
VARS-217ENST00000440048 KDRP35968 1356 aa31.94■■■□□ 2.7
VARS-217ENST00000440048 DIAPH1O60610 1272 aaKnown RBP31.94■■■□□ 2.7
VARS-217ENST00000440048 COL3A1P02461 1466 aaPredicted RBP31.93■■■□□ 2.7
VARS-217ENST00000440048 PHKG2P15735 406 aa31.93■■■□□ 2.7
VARS-217ENST00000440048 IFNL2Q8IZJ0 200 aa31.93■■■□□ 2.7
VARS-217ENST00000440048 ANO8Q9HCE9 1232 aaPredicted RBP31.93■■■□□ 2.7
VARS-217ENST00000440048 ITGB4P16144 1822 aa31.93■■■□□ 2.7
VARS-217ENST00000440048 PLEKHO1Q53GL0 409 aaPredicted RBP31.92■■■□□ 2.7
VARS-217ENST00000440048 AMOTQ4VCS5 1084 aa31.89■■■□□ 2.7
VARS-217ENST00000440048 LY75O60449 1722 aa31.89■■■□□ 2.69
VARS-217ENST00000440048 PPP2R1AP30153 589 aa31.88■■■□□ 2.69
VARS-217ENST00000440048 MPRIPQ6WCQ1 1025 aa31.88■■■□□ 2.69
VARS-217ENST00000440048 HMOX1P09601 288 aa31.87■■■□□ 2.69
VARS-217ENST00000440048 LRRC4BQ9NT99 713 aa31.87■■■□□ 2.69
VARS-217ENST00000440048 ZNF530Q6P9A1 599 aaPredicted RBP31.86■■■□□ 2.69
VARS-217ENST00000440048 DDX10Q13206 875 aaKnown RBP31.85■■■□□ 2.69
VARS-217ENST00000440048 PAPPAQ13219 1627 aa31.85■■■□□ 2.69
VARS-217ENST00000440048 SLC27A3Q5K4L6 730 aa31.84■■■□□ 2.69
VARS-217ENST00000440048 STK32BQ9NY57 414 aa31.84■■■□□ 2.69
VARS-217ENST00000440048 CFAP53Q96M91 514 aa31.83■■■□□ 2.69
VARS-217ENST00000440048 PIGBQ92521 554 aa31.82■■■□□ 2.68
VARS-217ENST00000440048 U2SURPO15042 1029 aaKnown RBP31.81■■■□□ 2.68
VARS-217ENST00000440048 HSP90AB1P08238 724 aaKnown RBP31.81■■■□□ 2.68
VARS-217ENST00000440048 SLC15A2Q16348 729 aa31.81■■■□□ 2.68
VARS-217ENST00000440048 KCNQ4P56696 695 aa31.8■■■□□ 2.68
VARS-217ENST00000440048 C1orf141Q5JVX7 400 aa31.79■■■□□ 2.68
VARS-217ENST00000440048 TMOD3Q9NYL9 352 aa31.79■■■□□ 2.68
VARS-217ENST00000440048 DCAF5Q96JK2 942 aa31.78■■■□□ 2.68
VARS-217ENST00000440048 CCNL1Q9UK58 526 aaPredicted RBP31.77■■■□□ 2.68
VARS-217ENST00000440048 PALLDQ8WX93 1383 aa31.77■■■□□ 2.68
VARS-217ENST00000440048 CASZ1Q86V15 1759 aa31.76■■■□□ 2.68
VARS-217ENST00000440048 KDM6AO15550 1401 aaPredicted RBP31.76■■■□□ 2.68
VARS-217ENST00000440048 ERVV-2B6SEH9 535 aa31.75■■■□□ 2.67
VARS-217ENST00000440048 ZNF827Q17R98 1081 aa31.75■■■□□ 2.67
VARS-217ENST00000440048 SMARCC1Q92922 1105 aaPredicted RBP31.75■■■□□ 2.67
VARS-217ENST00000440048 SPON1Q9HCB6 807 aa31.75■■■□□ 2.67
VARS-217ENST00000440048 PDGFDQ9GZP0 370 aaPredicted RBP31.74■■■□□ 2.67
VARS-217ENST00000440048 AKT1S1Q96B36 256 aa31.73■■■□□ 2.67
VARS-217ENST00000440048 AKAP4Q5JQC9 854 aa31.72■■■□□ 2.67
VARS-217ENST00000440048 NUDCQ9Y266 331 aa31.72■■■□□ 2.67
VARS-217ENST00000440048 MTHFSDQ2M296 383 aaKnown RBP31.71■■■□□ 2.67
VARS-217ENST00000440048 ASAP1Q9ULH1 1129 aa31.71■■■□□ 2.67
VARS-217ENST00000440048 SCN11AQ9UI33 1791 aa31.71■■■□□ 2.67
VARS-217ENST00000440048 TAF1LQ8IZX4 1826 aa31.68■■■□□ 2.66
VARS-217ENST00000440048 C5P01031 1676 aa31.68■■■□□ 2.66
VARS-217ENST00000440048 CABP4P57796 275 aa31.68■■■□□ 2.66
VARS-217ENST00000440048 ATG3Q9NT62 314 aa31.68■■■□□ 2.66
VARS-217ENST00000440048 RALBP1Q15311 655 aa31.67■■■□□ 2.66
VARS-217ENST00000440048 VIRMAQ69YN4 1812 aaKnown RBP31.67■■■□□ 2.66
VARS-217ENST00000440048 TUBGCP6Q96RT7 1819 aa31.67■■■□□ 2.66
VARS-217ENST00000440048 QSER1Q2KHR3 1735 aa31.66■■■□□ 2.66
VARS-217ENST00000440048 RSPH6AQ9H0K4 717 aa31.66■■■□□ 2.66
VARS-217ENST00000440048 U2AF1L5P0DN76 240 aaPredicted RBP31.65■■■□□ 2.66
VARS-217ENST00000440048 U2AF1Q01081 240 aaKnown RBP eCLIP31.65■■■□□ 2.66
VARS-217ENST00000440048 LOC102724428A0A0B4J2F2 783 aa31.64■■■□□ 2.66
VARS-217ENST00000440048 SIK1P57059 783 aa31.64■■■□□ 2.66
VARS-217ENST00000440048 PPP1R1BQ9UD71 204 aaPredicted RBP31.64■■■□□ 2.66
VARS-217ENST00000440048 ZBTB7AO95365 584 aa31.63■■■□□ 2.65
VARS-217ENST00000440048 PRKAR2BP31323 418 aa31.63■■■□□ 2.65
VARS-217ENST00000440048 LGR6Q9HBX8 967 aa31.63■■■□□ 2.65
VARS-217ENST00000440048 TFCP2L1Q9NZI6 479 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms