RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 EIF4A2Q14240 407 aaKnown RBP33.67■■■□□ 2.98
RAPGEF1-206ENST00000438647 PTF1AQ7RTS3 328 aa33.67■■■□□ 2.98
RAPGEF1-206ENST00000438647 ACSBG1Q96GR2 724 aa33.67■■■□□ 2.98
RAPGEF1-206ENST00000438647 NHSQ6T4R5 1651 aa33.67■■■□□ 2.98
RAPGEF1-206ENST00000438647 RREB1Q92766 1687 aa33.66■■■□□ 2.98
RAPGEF1-206ENST00000438647 EYA1Q99502 592 aa33.66■■■□□ 2.98
RAPGEF1-206ENST00000438647 NPC1L1Q9UHC9 1359 aa33.65■■■□□ 2.98
RAPGEF1-206ENST00000438647 KCNQ2O43526 872 aa33.65■■■□□ 2.98
RAPGEF1-206ENST00000438647 CC2D1BQ5T0F9 858 aaKnown RBP33.63■■■□□ 2.97
RAPGEF1-206ENST00000438647 PCDH11XQ9BZA7 1347 aa33.62■■■□□ 2.97
RAPGEF1-206ENST00000438647 PCDH11YQ9BZA8 1340 aa33.62■■■□□ 2.97
RAPGEF1-206ENST00000438647 SHANK3Q9BYB0 1731 aa33.62■■■□□ 2.97
RAPGEF1-206ENST00000438647 NBPF14Q5TI25 921 aa33.61■■■□□ 2.97
RAPGEF1-206ENST00000438647 KAT6BQ8WYB5 2073 aa33.6■■■□□ 2.97
RAPGEF1-206ENST00000438647 NUP188Q5SRE5 1749 aa33.59■■■□□ 2.97
RAPGEF1-206ENST00000438647 PSDA5PKW4 1024 aaPredicted RBP33.58■■■□□ 2.97
RAPGEF1-206ENST00000438647 IGSF1Q8N6C5 1336 aa33.57■■■□□ 2.97
RAPGEF1-206ENST00000438647 R3HDM1Q15032 1099 aaKnown RBP33.56■■■□□ 2.96
RAPGEF1-206ENST00000438647 SPG7Q9UQ90 795 aa33.56■■■□□ 2.96
RAPGEF1-206ENST00000438647 PLEKHG2Q9H7P9 1386 aa33.56■■■□□ 2.96
RAPGEF1-206ENST00000438647 SRCAPQ6ZRS2 3230 aa33.56■■■□□ 2.96
RAPGEF1-206ENST00000438647 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.55■■■□□ 2.96
RAPGEF1-206ENST00000438647 SYTL4Q96C24 671 aaPredicted RBP33.54■■■□□ 2.96
RAPGEF1-206ENST00000438647 PKD1L3Q7Z443 1732 aa33.53■■■□□ 2.96
RAPGEF1-206ENST00000438647 TXNRD1Q16881 649 aa33.53■■■□□ 2.96
RAPGEF1-206ENST00000438647 BTAF1O14981 1849 aa33.52■■■□□ 2.96
RAPGEF1-206ENST00000438647 PRIM1P49642 420 aaKnown RBP33.52■■■□□ 2.96
RAPGEF1-206ENST00000438647 MTHFSP49914 203 aa33.52■■■□□ 2.96
RAPGEF1-206ENST00000438647 DOT1LQ8TEK3 1739 aa33.51■■■□□ 2.96
RAPGEF1-206ENST00000438647 PROM2Q8N271 834 aa33.51■■■□□ 2.95
RAPGEF1-206ENST00000438647 CYP27B1O15528 508 aa33.5■■■□□ 2.95
RAPGEF1-206ENST00000438647 CNGB1Q14028 1251 aaPredicted RBP33.49■■■□□ 2.95
RAPGEF1-206ENST00000438647 IL13P35225 146 aa33.47■■■□□ 2.95
RAPGEF1-206ENST00000438647 NKX1-1Q15270 411 aaPredicted RBP33.43■■■□□ 2.94
RAPGEF1-206ENST00000438647 IFNL2Q8IZJ0 200 aa33.43■■■□□ 2.94
RAPGEF1-206ENST00000438647 PLEKHO1Q53GL0 409 aaPredicted RBP33.41■■■□□ 2.94
RAPGEF1-206ENST00000438647 SULT6B1Q6IMI4 303 aa33.41■■■□□ 2.94
RAPGEF1-206ENST00000438647 KDRP35968 1356 aa33.41■■■□□ 2.94
RAPGEF1-206ENST00000438647 DIAPH1O60610 1272 aaKnown RBP33.4■■■□□ 2.94
RAPGEF1-206ENST00000438647 AMOTQ4VCS5 1084 aa33.4■■■□□ 2.94
RAPGEF1-206ENST00000438647 SLC27A3Q5K4L6 730 aa33.4■■■□□ 2.94
RAPGEF1-206ENST00000438647 ANO8Q9HCE9 1232 aaPredicted RBP33.4■■■□□ 2.94
RAPGEF1-206ENST00000438647 STK32BQ9NY57 414 aa33.4■■■□□ 2.94
RAPGEF1-206ENST00000438647 PHKG2P15735 406 aa33.39■■■□□ 2.94
RAPGEF1-206ENST00000438647 AEBP1Q8IUX7 1158 aa33.39■■■□□ 2.94
RAPGEF1-206ENST00000438647 ZEB1P37275 1124 aaPredicted RBP33.37■■■□□ 2.93
RAPGEF1-206ENST00000438647 LRP5O75197 1615 aa33.36■■■□□ 2.93
RAPGEF1-206ENST00000438647 HSP90AB1P08238 724 aaKnown RBP33.35■■■□□ 2.93
RAPGEF1-206ENST00000438647 MPRIPQ6WCQ1 1025 aa33.35■■■□□ 2.93
RAPGEF1-206ENST00000438647 SLC15A2Q16348 729 aa33.34■■■□□ 2.93
RAPGEF1-206ENST00000438647 TOGARAM1Q9Y4F4 1720 aa33.33■■■□□ 2.93
RAPGEF1-206ENST00000438647 ZNF530Q6P9A1 599 aaPredicted RBP33.32■■■□□ 2.92
RAPGEF1-206ENST00000438647 CFAP53Q96M91 514 aa33.32■■■□□ 2.92
RAPGEF1-206ENST00000438647 LRRC4BQ9NT99 713 aa33.32■■■□□ 2.92
RAPGEF1-206ENST00000438647 LY75O60449 1722 aa33.3■■■□□ 2.92
RAPGEF1-206ENST00000438647 COL3A1P02461 1466 aaPredicted RBP33.3■■■□□ 2.92
RAPGEF1-206ENST00000438647 PAPPAQ13219 1627 aa33.29■■■□□ 2.92
RAPGEF1-206ENST00000438647 HMGB2P26583 209 aaKnown RBP33.29■■■□□ 2.92
RAPGEF1-206ENST00000438647 C1orf141Q5JVX7 400 aa33.29■■■□□ 2.92
RAPGEF1-206ENST00000438647 SMARCC1Q92922 1105 aaPredicted RBP33.29■■■□□ 2.92
RAPGEF1-206ENST00000438647 TMOD3Q9NYL9 352 aa33.29■■■□□ 2.92
RAPGEF1-206ENST00000438647 ITGB4P16144 1822 aa33.28■■■□□ 2.92
RAPGEF1-206ENST00000438647 DCAF5Q96JK2 942 aa33.28■■■□□ 2.92
RAPGEF1-206ENST00000438647 CCNL1Q9UK58 526 aaPredicted RBP33.28■■■□□ 2.92
RAPGEF1-206ENST00000438647 HMOX1P09601 288 aa33.27■■■□□ 2.92
RAPGEF1-206ENST00000438647 PPP2R1AP30153 589 aa33.27■■■□□ 2.92
RAPGEF1-206ENST00000438647 PIGBQ92521 554 aa33.27■■■□□ 2.92
RAPGEF1-206ENST00000438647 PALLDQ8WX93 1383 aa33.26■■■□□ 2.92
RAPGEF1-206ENST00000438647 ERVV-2B6SEH9 535 aa33.24■■■□□ 2.91
RAPGEF1-206ENST00000438647 U2SURPO15042 1029 aaKnown RBP33.24■■■□□ 2.91
RAPGEF1-206ENST00000438647 SPON1Q9HCB6 807 aa33.22■■■□□ 2.91
RAPGEF1-206ENST00000438647 KCNQ4P56696 695 aa33.21■■■□□ 2.91
RAPGEF1-206ENST00000438647 ZNF827Q17R98 1081 aa33.21■■■□□ 2.91
RAPGEF1-206ENST00000438647 AKT1S1Q96B36 256 aa33.21■■■□□ 2.91
RAPGEF1-206ENST00000438647 CASZ1Q86V15 1759 aa33.2■■■□□ 2.91
RAPGEF1-206ENST00000438647 NUDCQ9Y266 331 aa33.2■■■□□ 2.91
RAPGEF1-206ENST00000438647 AKAP4Q5JQC9 854 aa33.19■■■□□ 2.9
RAPGEF1-206ENST00000438647 KDM6AO15550 1401 aaPredicted RBP33.18■■■□□ 2.9
RAPGEF1-206ENST00000438647 DDX10Q13206 875 aaKnown RBP33.17■■■□□ 2.9
RAPGEF1-206ENST00000438647 CABP4P57796 275 aa33.16■■■□□ 2.9
RAPGEF1-206ENST00000438647 PDGFDQ9GZP0 370 aaPredicted RBP33.16■■■□□ 2.9
RAPGEF1-206ENST00000438647 TFCP2L1Q9NZI6 479 aa33.16■■■□□ 2.9
RAPGEF1-206ENST00000438647 ASAP1Q9ULH1 1129 aa33.14■■■□□ 2.9
RAPGEF1-206ENST00000438647 LOC102724428A0A0B4J2F2 783 aa33.12■■■□□ 2.89
RAPGEF1-206ENST00000438647 ZBTB7AO95365 584 aa33.12■■■□□ 2.89
RAPGEF1-206ENST00000438647 SIK1P57059 783 aa33.12■■■□□ 2.89
RAPGEF1-206ENST00000438647 MTHFSDQ2M296 383 aaKnown RBP33.11■■■□□ 2.89
RAPGEF1-206ENST00000438647 MTFR1LQ9H019 292 aa33.11■■■□□ 2.89
RAPGEF1-206ENST00000438647 ATG3Q9NT62 314 aa33.11■■■□□ 2.89
RAPGEF1-206ENST00000438647 RALBP1Q15311 655 aa33.1■■■□□ 2.89
RAPGEF1-206ENST00000438647 QSER1Q2KHR3 1735 aa33.1■■■□□ 2.89
RAPGEF1-206ENST00000438647 C5P01031 1676 aa33.1■■■□□ 2.89
RAPGEF1-206ENST00000438647 PPP1R1BQ9UD71 204 aaPredicted RBP33.09■■■□□ 2.89
RAPGEF1-206ENST00000438647 GAS2L2Q8NHY3 880 aa33.08■■■□□ 2.89
RAPGEF1-206ENST00000438647 PNPLA7Q6ZV29 1317 aa33.07■■■□□ 2.88
RAPGEF1-206ENST00000438647 U2AF1L5P0DN76 240 aaPredicted RBP33.07■■■□□ 2.88
RAPGEF1-206ENST00000438647 U2AF1Q01081 240 aaKnown RBP eCLIP33.07■■■□□ 2.88
RAPGEF1-206ENST00000438647 SLC16A10Q8TF71 515 aa33.07■■■□□ 2.88
RAPGEF1-206ENST00000438647 NFATC2IPQ8NCF5 419 aa33.06■■■□□ 2.88
RAPGEF1-206ENST00000438647 SCN11AQ9UI33 1791 aa33.06■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms