RNA–Protein interactions for RNA: ENST00000436289.6

NELFE-204, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 906 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-204ENST00000436289 USP47Q96K76 1375 aa21.42■■□□□ 1.02
NELFE-204ENST00000436289 USP54Q70EL1 1684 aa21.4■■□□□ 1.02
NELFE-204ENST00000436289 SBNO2Q9Y2G9 1366 aa21.4■■□□□ 1.02
NELFE-204ENST00000436289 APLP1P51693 650 aa21.39■■□□□ 1.01
NELFE-204ENST00000436289 LY75O60449 1722 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 ROCK2O75116 1388 aaKnown RBP21.38■■□□□ 1.01
NELFE-204ENST00000436289 CGNL1Q0VF96 1302 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 ZNF526Q8TF50 670 aaPredicted RBP21.38■■□□□ 1.01
NELFE-204ENST00000436289 L3MBTL2Q969R5 705 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 TERF2IPQ9NYB0 399 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 LTN1O94822 1766 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 MON2Q7Z3U7 1717 aa21.38■■□□□ 1.01
NELFE-204ENST00000436289 NSD2O96028 1365 aa21.37■■□□□ 1.01
NELFE-204ENST00000436289 TUBGCP6Q96RT7 1819 aa21.36■■□□□ 1.01
NELFE-204ENST00000436289 MSL1Q68DK7 614 aa21.36■■□□□ 1.01
NELFE-204ENST00000436289 TMC1Q8TDI8 760 aa21.36■■□□□ 1.01
NELFE-204ENST00000436289 LTV1Q96GA3 475 aaPredicted RBP21.36■■□□□ 1.01
NELFE-204ENST00000436289 EDC4Q6P2E9 1401 aaKnown RBP21.36■■□□□ 1.01
NELFE-204ENST00000436289 FAM208AQ9UK61 1670 aaKnown RBP21.34■■□□□ 1.01
NELFE-204ENST00000436289 PUS7Q96PZ0 661 aaKnown RBP21.34■■□□□ 1.01
NELFE-204ENST00000436289 KIF3CO14782 793 aa21.33■■□□□ 1.01
NELFE-204ENST00000436289 CD163L1Q9NR16 1453 aa21.32■■□□□ 1
NELFE-204ENST00000436289 TOMM70O94826 608 aa21.31■■□□□ 1
NELFE-204ENST00000436289 AMPHP49418 695 aa21.31■■□□□ 1
NELFE-204ENST00000436289 SLC12A5Q9H2X9 1139 aa21.31■■□□□ 1
NELFE-204ENST00000436289 IGSF1Q8N6C5 1336 aa21.29■■□□□ 1
NELFE-204ENST00000436289 HOXC9P31274 260 aa21.29■■□□□ 1
NELFE-204ENST00000436289 DNAJC5GQ8N7S2 189 aa21.29■■□□□ 1
NELFE-204ENST00000436289 SMARCC1Q92922 1105 aaPredicted RBP21.29■■□□□ 1
NELFE-204ENST00000436289 COG3Q96JB2 828 aa21.29■■□□□ 1
NELFE-204ENST00000436289 DOT1LQ8TEK3 1739 aa21.29■■□□□ 1
NELFE-204ENST00000436289 NSD3Q9BZ95 1437 aa21.29■■□□□ 1
NELFE-204ENST00000436289 RAPGEF4Q8WZA2 1011 aa21.28■■□□□ 1
NELFE-204ENST00000436289 AK7Q96M32 723 aa21.27■■□□□ 1
NELFE-204ENST00000436289 MAP3K19Q56UN5 1328 aa21.27■□□□□ 0.99
NELFE-204ENST00000436289 PALLDQ8WX93 1383 aa21.25■□□□□ 0.99
NELFE-204ENST00000436289 TATP17735 454 aaPredicted RBP21.24■□□□□ 0.99
NELFE-204ENST00000436289 A0A1W2PP64 1363 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 SSFA2P28290 1259 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 MEGF6O75095 1541 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 PCDH11XQ9BZA7 1347 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 PCDH11YQ9BZA8 1340 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 RTL1A6NKG5 1358 aa21.23■□□□□ 0.99
NELFE-204ENST00000436289 SLC24A1O60721 1099 aa21.22■□□□□ 0.99
NELFE-204ENST00000436289 NBPF6Q5VWK0 638 aa21.22■□□□□ 0.99
NELFE-204ENST00000436289 MPRIPQ6WCQ1 1025 aa21.22■□□□□ 0.99
NELFE-204ENST00000436289 NBPF4Q96M43 638 aa21.22■□□□□ 0.99
NELFE-204ENST00000436289 C5P01031 1676 aa21.21■□□□□ 0.99
NELFE-204ENST00000436289 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.21■□□□□ 0.99
NELFE-204ENST00000436289 TGFB2P61812 414 aa21.2■□□□□ 0.98
NELFE-204ENST00000436289 CARD11Q9BXL7 1154 aa21.2■□□□□ 0.98
NELFE-204ENST00000436289 SMG6Q86US8 1419 aaKnown RBP21.2■□□□□ 0.98
NELFE-204ENST00000436289 RBM46Q8TBY0 533 aaKnown RBP21.18■□□□□ 0.98
NELFE-204ENST00000436289 PHF14O94880 888 aa21.17■□□□□ 0.98
NELFE-204ENST00000436289 JMYQ8N9B5 988 aa21.16■□□□□ 0.98
NELFE-204ENST00000436289 WWC3Q9ULE0 1092 aa21.16■□□□□ 0.98
NELFE-204ENST00000436289 TAF1LQ8IZX4 1826 aa21.15■□□□□ 0.98
NELFE-204ENST00000436289 C4BP0C0L5 1744 aa21.15■□□□□ 0.98
NELFE-204ENST00000436289 CICQ96RK0 1608 aaPredicted RBP21.15■□□□□ 0.98
NELFE-204ENST00000436289 FSTL1Q12841 308 aa21.15■□□□□ 0.98
NELFE-204ENST00000436289 C16orf71Q8IYS4 520 aaPredicted RBP21.15■□□□□ 0.98
NELFE-204ENST00000436289 KLRG1Q96E93 195 aa21.15■□□□□ 0.98
NELFE-204ENST00000436289 SIN3AQ96ST3 1273 aa21.14■□□□□ 0.97
NELFE-204ENST00000436289 LOC102724428A0A0B4J2F2 783 aa21.13■□□□□ 0.97
NELFE-204ENST00000436289 SIK1P57059 783 aa21.13■□□□□ 0.97
NELFE-204ENST00000436289 NEUROD1Q13562 356 aa21.13■□□□□ 0.97
NELFE-204ENST00000436289 AMIGO3Q86WK7 504 aa21.13■□□□□ 0.97
NELFE-204ENST00000436289 CYP27B1O15528 508 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 FBLN1P23142 703 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 NKX1-1Q15270 411 aaPredicted RBP21.12■□□□□ 0.97
NELFE-204ENST00000436289 ARHGAP27Q6ZUM4 889 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 NLGN1Q8N2Q7 840 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 USHBP1Q8N6Y0 703 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 PIGBQ92521 554 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 BCS1LQ9Y276 419 aa21.12■□□□□ 0.97
NELFE-204ENST00000436289 KIF24Q5T7B8 1368 aa21.11■□□□□ 0.97
NELFE-204ENST00000436289 MMP10P09238 476 aa21.11■□□□□ 0.97
NELFE-204ENST00000436289 INSRP06213 1382 aa21.1■□□□□ 0.97
NELFE-204ENST00000436289 RRS1Q15050 365 aaKnown RBP21.1■□□□□ 0.97
NELFE-204ENST00000436289 COL13A1Q5TAT6 717 aaPredicted RBP21.1■□□□□ 0.97
NELFE-204ENST00000436289 NMRK2Q9NPI5 230 aa21.1■□□□□ 0.97
NELFE-204ENST00000436289 UBR3Q6ZT12 1888 aa21.09■□□□□ 0.97
NELFE-204ENST00000436289 GNPATO15228 680 aa21.09■□□□□ 0.97
NELFE-204ENST00000436289 RGPD2P0DJD1 1756 aa21.09■□□□□ 0.97
NELFE-204ENST00000436289 PLEKHG2Q9H7P9 1386 aa21.09■□□□□ 0.97
NELFE-204ENST00000436289 KDM2BQ8NHM5 1336 aa21.08■□□□□ 0.97
NELFE-204ENST00000436289 PRELPP51888 382 aa21.08■□□□□ 0.97
NELFE-204ENST00000436289 LINC00116Q8NCU8 138 aa21.08■□□□□ 0.97
NELFE-204ENST00000436289 SPG7Q9UQ90 795 aa21.08■□□□□ 0.97
NELFE-204ENST00000436289 PXDNLA1KZ92 1463 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 FYB1O15117 783 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 TMF1P82094 1093 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 HSP90AB2PQ58FF8 381 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 TRAPPC3LQ5T215 181 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 TNS4Q8IZW8 715 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 CCDC87Q9NVE4 849 aa21.07■□□□□ 0.96
NELFE-204ENST00000436289 A0A0G2JLW4 131 aa21.06■□□□□ 0.96
NELFE-204ENST00000436289 ATP6V1AP38606 617 aa21.06■□□□□ 0.96
NELFE-204ENST00000436289 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.06■□□□□ 0.962e-7■■□□□ 13.6
NELFE-204ENST00000436289 TMOD3Q9NYL9 352 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms