RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 DOT1LQ8TEK3 1739 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 FBLN1P23142 703 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 NBPF6Q5VWK0 638 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 NBPF4Q96M43 638 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 KNSTRNQ9Y448 316 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 PKD1L3Q7Z443 1732 aa20.36■□□□□ 0.85
LIMS1-209ENST00000434274 DDX54Q8TDD1 881 aaKnown RBP20.35■□□□□ 0.85
LIMS1-209ENST00000434274 EMILIN1Q9Y6C2 1016 aa20.35■□□□□ 0.85
LIMS1-209ENST00000434274 TXNRD1Q16881 649 aa20.34■□□□□ 0.85
LIMS1-209ENST00000434274 PPM1GO15355 546 aaPredicted RBP20.33■□□□□ 0.85
LIMS1-209ENST00000434274 STK32BQ9NY57 414 aa20.33■□□□□ 0.85
LIMS1-209ENST00000434274 SLC27A3Q5K4L6 730 aa20.32■□□□□ 0.84
LIMS1-209ENST00000434274 ACSBG1Q96GR2 724 aa20.32■□□□□ 0.84
LIMS1-209ENST00000434274 POLKQ9UBT6 870 aa20.32■□□□□ 0.84
LIMS1-209ENST00000434274 KIF7Q2M1P5 1343 aa20.31■□□□□ 0.84
LIMS1-209ENST00000434274 KCNQ2O43526 872 aa20.31■□□□□ 0.84
LIMS1-209ENST00000434274 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.31■□□□□ 0.84
LIMS1-209ENST00000434274 PAPPAQ13219 1627 aa20.3■□□□□ 0.84
LIMS1-209ENST00000434274 CASZ1Q86V15 1759 aa20.29■□□□□ 0.84
LIMS1-209ENST00000434274 PTF1AQ7RTS3 328 aa20.29■□□□□ 0.84
LIMS1-209ENST00000434274 MORC1Q86VD1 984 aa20.29■□□□□ 0.84
LIMS1-209ENST00000434274 SPON1Q9HCB6 807 aa20.29■□□□□ 0.84
LIMS1-209ENST00000434274 SPG7Q9UQ90 795 aa20.29■□□□□ 0.84
LIMS1-209ENST00000434274 USHBP1Q8N6Y0 703 aa20.28■□□□□ 0.84
LIMS1-209ENST00000434274 LY75O60449 1722 aa20.27■□□□□ 0.84
LIMS1-209ENST00000434274 SRCAPQ6ZRS2 3230 aa20.27■□□□□ 0.84
LIMS1-209ENST00000434274 QSER1Q2KHR3 1735 aa20.27■□□□□ 0.83
LIMS1-209ENST00000434274 SLC15A2Q16348 729 aa20.26■□□□□ 0.83
LIMS1-209ENST00000434274 PROM2Q8N271 834 aa20.26■□□□□ 0.83
LIMS1-209ENST00000434274 SYTL4Q96C24 671 aaPredicted RBP20.26■□□□□ 0.83
LIMS1-209ENST00000434274 NPC1L1Q9UHC9 1359 aa20.25■□□□□ 0.83
LIMS1-209ENST00000434274 TNNT2P45379 298 aaPredicted RBP20.25■□□□□ 0.83
LIMS1-209ENST00000434274 ANO8Q9HCE9 1232 aaPredicted RBP20.25■□□□□ 0.83
LIMS1-209ENST00000434274 PRIM1P49642 420 aaKnown RBP20.24■□□□□ 0.83
LIMS1-209ENST00000434274 EYA1Q99502 592 aa20.24■□□□□ 0.83
LIMS1-209ENST00000434274 IGSF1Q8N6C5 1336 aa20.24■□□□□ 0.83
LIMS1-209ENST00000434274 EIF4A2Q14240 407 aaKnown RBP20.23■□□□□ 0.83
LIMS1-209ENST00000434274 AMER1Q5JTC6 1135 aaPredicted RBP20.22■□□□□ 0.83
LIMS1-209ENST00000434274 PPP1R1BQ9UD71 204 aaPredicted RBP20.22■□□□□ 0.83
LIMS1-209ENST00000434274 SMARCC1Q92922 1105 aaPredicted RBP20.21■□□□□ 0.83
LIMS1-209ENST00000434274 NKX1-1Q15270 411 aaPredicted RBP20.2■□□□□ 0.82
LIMS1-209ENST00000434274 ITGB4P16144 1822 aa20.2■□□□□ 0.82
LIMS1-209ENST00000434274 CYP27B1O15528 508 aa20.19■□□□□ 0.82
LIMS1-209ENST00000434274 HSP90AB1P08238 724 aaKnown RBP20.19■□□□□ 0.82
LIMS1-209ENST00000434274 IFNL2Q8IZJ0 200 aa20.19■□□□□ 0.82
LIMS1-209ENST00000434274 AMOTQ4VCS5 1084 aa20.18■□□□□ 0.82
LIMS1-209ENST00000434274 MTFR1LQ9H019 292 aa20.18■□□□□ 0.82
LIMS1-209ENST00000434274 TOGARAM1Q9Y4F4 1720 aa20.18■□□□□ 0.82
LIMS1-209ENST00000434274 SLC16A10Q8TF71 515 aa20.17■□□□□ 0.82
LIMS1-209ENST00000434274 CCNL1Q9UK58 526 aaPredicted RBP20.17■□□□□ 0.82
LIMS1-209ENST00000434274 C5P01031 1676 aa20.16■□□□□ 0.82
LIMS1-209ENST00000434274 PER1O15534 1290 aaPredicted RBP20.15■□□□□ 0.82
LIMS1-209ENST00000434274 PLEKHO1Q53GL0 409 aaPredicted RBP20.15■□□□□ 0.82
LIMS1-209ENST00000434274 LRRC4BQ9NT99 713 aa20.15■□□□□ 0.82
LIMS1-209ENST00000434274 KDRP35968 1356 aa20.15■□□□□ 0.82
LIMS1-209ENST00000434274 PALLDQ8WX93 1383 aa20.15■□□□□ 0.82
LIMS1-209ENST00000434274 DCAF8L1A6NGE4 600 aa20.14■□□□□ 0.81
LIMS1-209ENST00000434274 AKT1S1Q96B36 256 aa20.14■□□□□ 0.81
LIMS1-209ENST00000434274 PHKG2P15735 406 aa20.13■□□□□ 0.81
LIMS1-209ENST00000434274 TMOD3Q9NYL9 352 aa20.13■□□□□ 0.81
LIMS1-209ENST00000434274 TAF1LQ8IZX4 1826 aa20.12■□□□□ 0.81
LIMS1-209ENST00000434274 MPRIPQ6WCQ1 1025 aa20.12■□□□□ 0.81
LIMS1-209ENST00000434274 TFCP2L1Q9NZI6 479 aa20.12■□□□□ 0.81
LIMS1-209ENST00000434274 ZNF827Q17R98 1081 aa20.11■□□□□ 0.81
LIMS1-209ENST00000434274 FLAD1Q8NFF5 587 aa20.11■□□□□ 0.81
LIMS1-209ENST00000434274 DCAF5Q96JK2 942 aa20.11■□□□□ 0.81
LIMS1-209ENST00000434274 TUBGCP6Q96RT7 1819 aa20.11■□□□□ 0.81
LIMS1-209ENST00000434274 ERVV-2B6SEH9 535 aa20.1■□□□□ 0.81
LIMS1-209ENST00000434274 ZBTB7AO95365 584 aa20.1■□□□□ 0.81
LIMS1-209ENST00000434274 C1orf141Q5JVX7 400 aa20.1■□□□□ 0.81
LIMS1-209ENST00000434274 COL24A1Q17RW2 1714 aa20.1■□□□□ 0.81
LIMS1-209ENST00000434274 ZNF831Q5JPB2 1677 aa20.1■□□□□ 0.81
LIMS1-209ENST00000434274 IL13P35225 146 aa20.09■□□□□ 0.81
LIMS1-209ENST00000434274 MTHFSP49914 203 aa20.09■□□□□ 0.81
LIMS1-209ENST00000434274 ZNF530Q6P9A1 599 aaPredicted RBP20.08■□□□□ 0.81
LIMS1-209ENST00000434274 MAP3K5Q99683 1374 aa20.08■□□□□ 0.8
LIMS1-209ENST00000434274 POLD1P28340 1107 aa20.07■□□□□ 0.8
LIMS1-209ENST00000434274 CC2D1BQ5T0F9 858 aaKnown RBP20.07■□□□□ 0.8
LIMS1-209ENST00000434274 SULT6B1Q6IMI4 303 aa20.07■□□□□ 0.8
LIMS1-209ENST00000434274 PIGBQ92521 554 aa20.07■□□□□ 0.8
LIMS1-209ENST00000434274 C4BP0C0L5 1744 aa20.07■□□□□ 0.8
LIMS1-209ENST00000434274 PNPLA7Q6ZV29 1317 aa20.06■□□□□ 0.8
LIMS1-209ENST00000434274 DIAPH1O60610 1272 aaKnown RBP20.06■□□□□ 0.8
LIMS1-209ENST00000434274 PTGER2P43116 358 aa20.06■□□□□ 0.8
LIMS1-209ENST00000434274 AK7Q96M32 723 aa20.04■□□□□ 0.8
LIMS1-209ENST00000434274 CFAP53Q96M91 514 aa20.04■□□□□ 0.8
LIMS1-209ENST00000434274 PDGFDQ9GZP0 370 aaPredicted RBP20.04■□□□□ 0.8
LIMS1-209ENST00000434274 ATF5Q9Y2D1 282 aaPredicted RBP20.04■□□□□ 0.8
LIMS1-209ENST00000434274 LOC102724428A0A0B4J2F2 783 aa20.03■□□□□ 0.8
LIMS1-209ENST00000434274 SIK1P57059 783 aa20.03■□□□□ 0.8
LIMS1-209ENST00000434274 ARXQ96QS3 562 aa20.03■□□□□ 0.8
LIMS1-209ENST00000434274 SGIP1Q9BQI5 828 aa20.03■□□□□ 0.8
LIMS1-209ENST00000434274 SCN11AQ9UI33 1791 aa20.03■□□□□ 0.8
LIMS1-209ENST00000434274 KDM6AO15550 1401 aaPredicted RBP20.02■□□□□ 0.79
LIMS1-209ENST00000434274 UBR3Q6ZT12 1888 aa20.01■□□□□ 0.79
LIMS1-209ENST00000434274 COL3A1P02461 1466 aaPredicted RBP20.01■□□□□ 0.79
LIMS1-209ENST00000434274 CABP4P57796 275 aa20.01■□□□□ 0.79
LIMS1-209ENST00000434274 AKAP4Q5JQC9 854 aa20.01■□□□□ 0.79
LIMS1-209ENST00000434274 AEBP1Q8IUX7 1158 aa20.01■□□□□ 0.79
LIMS1-209ENST00000434274 CICQ96RK0 1608 aaPredicted RBP20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms