RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 DNAJC14Q6Y2X3 702 aaPredicted RBP6.61□□□□□ -1.35
HMGB3-203ENST00000430118 TRIM52Q96A61 297 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 WBP1LQ9NX94 342 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 SLAIN2Q9P270 581 aa6.61□□□□□ -1.35
HMGB3-203ENST00000430118 M0R2N6 131 aa6.6□□□□□ -1.35
HMGB3-203ENST00000430118 DKK1O94907 266 aa6.6□□□□□ -1.35
HMGB3-203ENST00000430118 ZNF428Q96B54 188 aa6.6□□□□□ -1.35
HMGB3-203ENST00000430118 GTF2IP78347 998 aa6.59□□□□□ -1.35
HMGB3-203ENST00000430118 IFFO2Q5TF58 517 aa6.59□□□□□ -1.35
HMGB3-203ENST00000430118 TAS1R3Q7RTX0 852 aa6.59□□□□□ -1.35
HMGB3-203ENST00000430118 TRMT44Q8IYL2 757 aaKnown RBP6.59□□□□□ -1.35
HMGB3-203ENST00000430118 SLC10A4Q96EP9 437 aa6.59□□□□□ -1.35
HMGB3-203ENST00000430118 PRDM9Q9NQV7 894 aa6.59□□□□□ -1.35
HMGB3-203ENST00000430118 CXXC1Q9P0U4 656 aaPredicted RBP6.59□□□□□ -1.35
HMGB3-203ENST00000430118 FANCD2Q9BXW9 1451 aa6.59□□□□□ -1.36
HMGB3-203ENST00000430118 ESPNB1AK53 854 aa6.58□□□□□ -1.36
HMGB3-203ENST00000430118 ZBTB7BO15156 539 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-203ENST00000430118 USP4Q13107 963 aa6.58□□□□□ -1.36
HMGB3-203ENST00000430118 ERFEQ4G0M1 354 aa6.58□□□□□ -1.36
HMGB3-203ENST00000430118 ZNF594Q96JF6 807 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-203ENST00000430118 CCDC85AQ96PX6 553 aaPredicted RBP6.58□□□□□ -1.36
HMGB3-203ENST00000430118 C1QTNF2Q9BXJ5 285 aa6.58□□□□□ -1.36
HMGB3-203ENST00000430118 SLC6A16Q9GZN6 736 aa6.58□□□□□ -1.36
HMGB3-203ENST00000430118 COPS2P61201 443 aa6.57□□□□□ -1.36
HMGB3-203ENST00000430118 OCLNQ16625 522 aa6.57□□□□□ -1.36
HMGB3-203ENST00000430118 CCDC102BQ68D86 513 aa6.57□□□□□ -1.36
HMGB3-203ENST00000430118 IL21Q9HBE4 155 aa6.57□□□□□ -1.36
HMGB3-203ENST00000430118 SERPINB4P48594 390 aa6.56□□□□□ -1.36
HMGB3-203ENST00000430118 MARSP56192 900 aaKnown RBP6.56□□□□□ -1.36
HMGB3-203ENST00000430118 ZNF511Q8NB15 262 aa6.56□□□□□ -1.36
HMGB3-203ENST00000430118 COL26A1Q96A83 441 aa6.56□□□□□ -1.36
HMGB3-203ENST00000430118 MAGEB6P1A0A0J9YX57 407 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 PTCD1O75127 700 aaKnown RBP6.55□□□□□ -1.36
HMGB3-203ENST00000430118 GIGYF1O75420 1035 aaPredicted RBP6.55□□□□□ -1.36
HMGB3-203ENST00000430118 OXLD1Q5BKU9 147 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 PTCRAQ6ISU1 281 aaPredicted RBP6.55□□□□□ -1.36
HMGB3-203ENST00000430118 CCDC24Q8N4L8 307 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 MTRQ99707 1265 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 KIAA1024Q9UPX6 916 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 PCDHGA11Q9Y5H2 935 aa6.55□□□□□ -1.36
HMGB3-203ENST00000430118 TLL1O43897 1013 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 RGS20O76081 388 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 SF3B2Q13435 895 aaKnown RBP6.54□□□□□ -1.36
HMGB3-203ENST00000430118 COL19A1Q14993 1142 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 AGERQ15109 404 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 CYB5RLQ6IPT4 315 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 TPCN2Q8NHX9 752 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 CARD14Q9BXL6 1004 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 IGSF5Q9NSI5 407 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 MAP4K5Q9Y4K4 846 aa6.54□□□□□ -1.36
HMGB3-203ENST00000430118 IFT140Q96RY7 1462 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 RSF1Q96T23 1441 aaPredicted RBP6.53□□□□□ -1.36
HMGB3-203ENST00000430118 ICMTO60725 284 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 MYCP01106 439 aaPredicted RBP6.53□□□□□ -1.36
HMGB3-203ENST00000430118 WEE1P30291 646 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 PSME1Q06323 249 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 TSGA10IPQ3SY00 556 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 TJAP1Q5JTD0 557 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 BAP1Q92560 729 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 BCL11AQ9H165 835 aa6.53□□□□□ -1.36
HMGB3-203ENST00000430118 BIN2Q9UBW5 565 aaPredicted RBP6.53□□□□□ -1.36
HMGB3-203ENST00000430118 MROH2BQ7Z745 1585 aa6.52□□□□□ -1.36
HMGB3-203ENST00000430118 WASLO00401 505 aaPredicted RBP6.52□□□□□ -1.37
HMGB3-203ENST00000430118 C21orf2O43822 256 aa6.52□□□□□ -1.37
HMGB3-203ENST00000430118 PRMT3O60678 531 aa6.52□□□□□ -1.37
HMGB3-203ENST00000430118 VAMP1P23763 118 aa6.52□□□□□ -1.37
HMGB3-203ENST00000430118 BCL2L13Q9BXK5 485 aa6.52□□□□□ -1.37
HMGB3-203ENST00000430118 CFTRP13569 1480 aa6.52□□□□□ -1.37
HMGB3-203ENST00000430118 A0A0G2JS52 829 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 UNCXA6NJT0 531 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 FOXO3O43524 673 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 ZNF16P17020 682 aaPredicted RBP6.51□□□□□ -1.37
HMGB3-203ENST00000430118 C4orf48Q5BLP8 95 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 NPAS4Q8IUM7 802 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 GLYCTKQ8IVS8 523 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 GAS2L2Q8NHY3 880 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 FOXJ1Q92949 421 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 PCDHB11Q9Y5F2 797 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 ARAP1Q96P48 1450 aa6.51□□□□□ -1.37
HMGB3-203ENST00000430118 URB2Q14146 1524 aaKnown RBP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 SFI1A8K8P3 1242 aa6.5□□□□□ -1.37
HMGB3-203ENST00000430118 H3BRB1 525 aa6.5□□□□□ -1.37
HMGB3-203ENST00000430118 IGFBP4P22692 258 aa6.5□□□□□ -1.37
HMGB3-203ENST00000430118 FKBP4Q02790 459 aaKnown RBP eCLIP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 ZNF326Q5BKZ1 582 aaKnown RBP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 MRRFQ96E11 262 aaKnown RBP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 ASB16Q96NS5 453 aa6.5□□□□□ -1.37
HMGB3-203ENST00000430118 TUT1Q9H6E5 874 aaKnown RBP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 DCTN4Q9UJW0 460 aa6.5□□□□□ -1.37
HMGB3-203ENST00000430118 FCF1Q9Y324 198 aaKnown RBP6.5□□□□□ -1.37
HMGB3-203ENST00000430118 EIF4G3O43432 1585 aaKnown RBP6.49□□□□□ -1.37
HMGB3-203ENST00000430118 ANKRD33BA6NCL7 494 aa6.49□□□□□ -1.37
HMGB3-203ENST00000430118 BACH1O14867 736 aa6.49□□□□□ -1.37
HMGB3-203ENST00000430118 ITGBL1O95965 494 aaPredicted RBP6.49□□□□□ -1.37
HMGB3-203ENST00000430118 VARSP26640 1264 aaKnown RBP6.49□□□□□ -1.37
HMGB3-203ENST00000430118 WNT7BP56706 349 aa6.49□□□□□ -1.37
HMGB3-203ENST00000430118 NOM1Q5C9Z4 860 aaKnown RBP6.49□□□□□ -1.37
HMGB3-203ENST00000430118 ZSCAN29Q8IWY8 852 aaPredicted RBP6.49□□□□□ -1.37
HMGB3-203ENST00000430118 ABL1P00519 1130 aa6.48□□□□□ -1.37
HMGB3-203ENST00000430118 NPR3P17342 541 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms