RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 ACSBG1Q96GR2 724 aa25.21■■□□□ 1.63
SHH-202ENST00000430104 IL13P35225 146 aa25.2■■□□□ 1.62
SHH-202ENST00000430104 EN1Q05925 392 aaPredicted RBP25.2■■□□□ 1.62
SHH-202ENST00000430104 NCAPD2Q15021 1401 aa25.2■■□□□ 1.62
SHH-202ENST00000430104 IGSF1Q8N6C5 1336 aa25.19■■□□□ 1.62
SHH-202ENST00000430104 PTF1AQ7RTS3 328 aa25.19■■□□□ 1.62
SHH-202ENST00000430104 PPP2R1AP30153 589 aa25.18■■□□□ 1.62
SHH-202ENST00000430104 DIAPH1O60610 1272 aaKnown RBP25.17■■□□□ 1.62
SHH-202ENST00000430104 SULT6B1Q6IMI4 303 aa25.16■■□□□ 1.62
SHH-202ENST00000430104 AEBP1Q8IUX7 1158 aa25.16■■□□□ 1.62
SHH-202ENST00000430104 PKD1L3Q7Z443 1732 aa25.15■■□□□ 1.62
SHH-202ENST00000430104 BCL9O00512 1426 aa25.15■■□□□ 1.62
SHH-202ENST00000430104 ZNF316A6NFI3 1004 aaPredicted RBP25.15■■□□□ 1.62
SHH-202ENST00000430104 KCNQ2O43526 872 aa25.15■■□□□ 1.62
SHH-202ENST00000430104 BCL11BQ9C0K0 894 aaPredicted RBP25.15■■□□□ 1.62
SHH-202ENST00000430104 EZH2Q15910 746 aaKnown RBP25.14■■□□□ 1.62
SHH-202ENST00000430104 SPG7Q9UQ90 795 aa25.14■■□□□ 1.62
SHH-202ENST00000430104 PCDH11XQ9BZA7 1347 aa25.13■■□□□ 1.61
SHH-202ENST00000430104 PCDH11YQ9BZA8 1340 aa25.13■■□□□ 1.61
SHH-202ENST00000430104 CFAP53Q96M91 514 aa25.13■■□□□ 1.61
SHH-202ENST00000430104 NHSQ6T4R5 1651 aa25.13■■□□□ 1.61
SHH-202ENST00000430104 DOT1LQ8TEK3 1739 aa25.12■■□□□ 1.61
SHH-202ENST00000430104 HMOX1P09601 288 aa25.12■■□□□ 1.61
SHH-202ENST00000430104 COL3A1P02461 1466 aaPredicted RBP25.11■■□□□ 1.61
SHH-202ENST00000430104 PARD3Q8TEW0 1356 aa25.11■■□□□ 1.61
SHH-202ENST00000430104 U2SURPO15042 1029 aaKnown RBP25.11■■□□□ 1.61
SHH-202ENST00000430104 CYP27B1O15528 508 aa25.11■■□□□ 1.61
SHH-202ENST00000430104 SYTL4Q96C24 671 aaPredicted RBP25.11■■□□□ 1.61
SHH-202ENST00000430104 CAMKK2Q96RR4 588 aa25.09■■□□□ 1.61
SHH-202ENST00000430104 BTAF1O14981 1849 aa25.08■■□□□ 1.61
SHH-202ENST00000430104 PRIM1P49642 420 aaKnown RBP25.07■■□□□ 1.6
SHH-202ENST00000430104 PLEKHO1Q53GL0 409 aaPredicted RBP25.07■■□□□ 1.6
SHH-202ENST00000430104 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.07■■□□□ 1.6
SHH-202ENST00000430104 RALBP1Q15311 655 aa25.05■■□□□ 1.6
SHH-202ENST00000430104 IFNL2Q8IZJ0 200 aa25.05■■□□□ 1.6
SHH-202ENST00000430104 KDRP35968 1356 aa25.05■■□□□ 1.6
SHH-202ENST00000430104 PLSCR1O15162 318 aa25.03■■□□□ 1.6
SHH-202ENST00000430104 PHKG2P15735 406 aa25.03■■□□□ 1.6
SHH-202ENST00000430104 AMOTQ4VCS5 1084 aa25.03■■□□□ 1.6
SHH-202ENST00000430104 ZNF530Q6P9A1 599 aaPredicted RBP25.03■■□□□ 1.6
SHH-202ENST00000430104 NUDCQ9Y266 331 aa25.03■■□□□ 1.6
SHH-202ENST00000430104 RREB1Q92766 1687 aa25.02■■□□□ 1.6
SHH-202ENST00000430104 TOGARAM1Q9Y4F4 1720 aa25.02■■□□□ 1.6
SHH-202ENST00000430104 ITGB4P16144 1822 aa25.01■■□□□ 1.59
SHH-202ENST00000430104 NUP188Q5SRE5 1749 aa25■■□□□ 1.59
SHH-202ENST00000430104 RGPD3A6NKT7 1758 aaPredicted RBP25■■□□□ 1.59
SHH-202ENST00000430104 RGPD4Q7Z3J3 1758 aa25■■□□□ 1.59
SHH-202ENST00000430104 NKX1-1Q15270 411 aaPredicted RBP24.99■■□□□ 1.59
SHH-202ENST00000430104 C1orf141Q5JVX7 400 aa24.99■■□□□ 1.59
SHH-202ENST00000430104 MPRIPQ6WCQ1 1025 aa24.99■■□□□ 1.59
SHH-202ENST00000430104 PLEKHG2Q9H7P9 1386 aa24.99■■□□□ 1.59
SHH-202ENST00000430104 U2AF1L5P0DN76 240 aaPredicted RBP24.98■■□□□ 1.59
SHH-202ENST00000430104 U2AF1Q01081 240 aaKnown RBP eCLIP24.98■■□□□ 1.59
SHH-202ENST00000430104 TXNRD1Q16881 649 aa24.97■■□□□ 1.59
SHH-202ENST00000430104 MYBBP1AQ9BQG0 1328 aaKnown RBP24.96■■□□□ 1.59
SHH-202ENST00000430104 PROM2Q8N271 834 aa24.96■■□□□ 1.59
SHH-202ENST00000430104 PSDA5PKW4 1024 aaPredicted RBP24.95■■□□□ 1.58
SHH-202ENST00000430104 HSP90AB1P08238 724 aaKnown RBP24.94■■□□□ 1.58
SHH-202ENST00000430104 MTHFSDQ2M296 383 aaKnown RBP24.94■■□□□ 1.58
SHH-202ENST00000430104 PRKRIP1Q9H875 184 aaPredicted RBP24.94■■□□□ 1.58
SHH-202ENST00000430104 PRKAR2BP31323 418 aa24.93■■□□□ 1.58
SHH-202ENST00000430104 NBPF14Q5TI25 921 aa24.93■■□□□ 1.58
SHH-202ENST00000430104 DCAF5Q96JK2 942 aa24.92■■□□□ 1.58
SHH-202ENST00000430104 RSPH6AQ9H0K4 717 aa24.92■■□□□ 1.58
SHH-202ENST00000430104 TMOD3Q9NYL9 352 aa24.92■■□□□ 1.58
SHH-202ENST00000430104 VIRMAQ69YN4 1812 aaKnown RBP24.91■■□□□ 1.58
SHH-202ENST00000430104 R3HDM1Q15032 1099 aaKnown RBP24.91■■□□□ 1.58
SHH-202ENST00000430104 PIGBQ92521 554 aa24.91■■□□□ 1.58
SHH-202ENST00000430104 AKAP4Q5JQC9 854 aa24.9■■□□□ 1.58
SHH-202ENST00000430104 KDM6AO15550 1401 aaPredicted RBP24.89■■□□□ 1.58
SHH-202ENST00000430104 KCNQ4P56696 695 aa24.89■■□□□ 1.58
SHH-202ENST00000430104 LY75O60449 1722 aa24.89■■□□□ 1.57
SHH-202ENST00000430104 SCN11AQ9UI33 1791 aa24.88■■□□□ 1.57
SHH-202ENST00000430104 CABP4P57796 275 aa24.88■■□□□ 1.57
SHH-202ENST00000430104 PHACTR3Q96KR7 559 aa24.88■■□□□ 1.57
SHH-202ENST00000430104 ERVV-2B6SEH9 535 aa24.87■■□□□ 1.57
SHH-202ENST00000430104 FCHSD2O94868 740 aa24.87■■□□□ 1.57
SHH-202ENST00000430104 LGR6Q9HBX8 967 aa24.86■■□□□ 1.57
SHH-202ENST00000430104 ANO8Q9HCE9 1232 aaPredicted RBP24.86■■□□□ 1.57
SHH-202ENST00000430104 LRRC4BQ9NT99 713 aa24.86■■□□□ 1.57
SHH-202ENST00000430104 PALLDQ8WX93 1383 aa24.85■■□□□ 1.57
SHH-202ENST00000430104 GAS2L2Q8NHY3 880 aa24.85■■□□□ 1.57
SHH-202ENST00000430104 SMARCC1Q92922 1105 aaPredicted RBP24.84■■□□□ 1.57
SHH-202ENST00000430104 STK32BQ9NY57 414 aa24.84■■□□□ 1.57
SHH-202ENST00000430104 CCNL1Q9UK58 526 aaPredicted RBP24.84■■□□□ 1.57
SHH-202ENST00000430104 ASAP1Q9ULH1 1129 aa24.84■■□□□ 1.57
SHH-202ENST00000430104 RNMTO43148 476 aaKnown RBP24.83■■□□□ 1.57
SHH-202ENST00000430104 SLC27A3Q5K4L6 730 aa24.83■■□□□ 1.57
SHH-202ENST00000430104 NFATC2IPQ8NCF5 419 aa24.83■■□□□ 1.57
SHH-202ENST00000430104 GNAT3A8MTJ3 354 aa24.81■■□□□ 1.56
SHH-202ENST00000430104 ANP32CO43423 234 aa24.81■■□□□ 1.56
SHH-202ENST00000430104 NEFMP07197 916 aa24.81■■□□□ 1.56
SHH-202ENST00000430104 ATG3Q9NT62 314 aa24.81■■□□□ 1.56
SHH-202ENST00000430104 MAP3K5Q99683 1374 aa24.8■■□□□ 1.56
SHH-202ENST00000430104 PAPPAQ13219 1627 aa24.79■■□□□ 1.56
SHH-202ENST00000430104 WDR43Q15061 677 aaKnown RBP eCLIP24.78■■□□□ 1.56
SHH-202ENST00000430104 SLC15A2Q16348 729 aa24.78■■□□□ 1.56
SHH-202ENST00000430104 SLC52A2Q9HAB3 445 aa24.78■■□□□ 1.56
SHH-202ENST00000430104 RBM42Q9BTD8 480 aaKnown RBP24.77■■□□□ 1.56
SHH-202ENST00000430104 PNNQ9H307 717 aaKnown RBP24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms