RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 USP17L2Q6R6M4 530 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 USP17L1Q7RTZ2 530 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 MEIOBQ8N635 442 aa11.3□□□□□ -0.6
CCDC88A-206ENST00000430086 CCDC82Q8N4S0 544 aa11.29□□□□□ -0.6
CCDC88A-206ENST00000430086 OSBPL3Q9H4L5 887 aa11.29□□□□□ -0.6
CCDC88A-206ENST00000430086 ST8SIA5O15466 376 aa11.28□□□□□ -0.6
CCDC88A-206ENST00000430086 ADH1AP07327 375 aa11.28□□□□□ -0.6
CCDC88A-206ENST00000430086 DEPDC4Q8N2C3 294 aa11.28□□□□□ -0.6
CCDC88A-206ENST00000430086 ESF1Q9H501 851 aaKnown RBP11.28□□□□□ -0.6
CCDC88A-206ENST00000430086 LCE2BO14633 110 aa11.27□□□□□ -0.61
CCDC88A-206ENST00000430086 NOD1Q9Y239 953 aa11.27□□□□□ -0.61
CCDC88A-206ENST00000430086 LMOD1P29536 600 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-206ENST00000430086 CYP2U1Q7Z449 544 aa11.26□□□□□ -0.61
CCDC88A-206ENST00000430086 KDF1Q8NAX2 398 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-206ENST00000430086 TSEN34Q9BSV6 310 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-206ENST00000430086 MRPL14Q6P1L8 145 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-206ENST00000430086 ATP5J2-PTCD1G3V325 749 aa11.24□□□□□ -0.61
CCDC88A-206ENST00000430086 TRIM46Q7Z4K8 759 aa11.24□□□□□ -0.61
CCDC88A-206ENST00000430086 LINC00528Q8N1L1 170 aa11.24□□□□□ -0.61
CCDC88A-206ENST00000430086 MKRN1Q9UHC7 482 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-206ENST00000430086 UPP2O95045 317 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 PTGIRP43119 386 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 KANK4Q5T7N3 995 aaPredicted RBP11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 TRIM50Q86XT4 487 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 AGBL1Q96MI9 1066 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 ATP13A2Q9NQ11 1180 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 PCDHGA11Q9Y5H2 935 aa11.23□□□□□ -0.61
CCDC88A-206ENST00000430086 GNRH1P01148 92 aa11.22□□□□□ -0.61
CCDC88A-206ENST00000430086 BMP1P13497 986 aa11.22□□□□□ -0.61
CCDC88A-206ENST00000430086 DACH1Q9UI36 760 aa11.22□□□□□ -0.61
CCDC88A-206ENST00000430086 GTF2IP78347 998 aa11.21□□□□□ -0.61
CCDC88A-206ENST00000430086 SCARF1Q14162 830 aa11.21□□□□□ -0.61
CCDC88A-206ENST00000430086 VRTNQ9H8Y1 702 aa11.21□□□□□ -0.61
CCDC88A-206ENST00000430086 SPINT1O43278 529 aa11.2□□□□□ -0.62
CCDC88A-206ENST00000430086 RFX1P22670 979 aa11.2□□□□□ -0.62
CCDC88A-206ENST00000430086 ATP1A2P50993 1020 aa11.2□□□□□ -0.62
CCDC88A-206ENST00000430086 SRPK2P78362 688 aaKnown RBP11.2□□□□□ -0.62
CCDC88A-206ENST00000430086 RELBQ01201 579 aa11.2□□□□□ -0.62
CCDC88A-206ENST00000430086 BMP2P12643 396 aa11.18□□□□□ -0.62
CCDC88A-206ENST00000430086 CLDN10P78369 228 aa11.18□□□□□ -0.62
CCDC88A-206ENST00000430086 LARGE2Q8N3Y3 721 aa11.18□□□□□ -0.62
CCDC88A-206ENST00000430086 PURBQ96QR8 312 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-206ENST00000430086 A0A1W2PRU2 124 aa11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 WASLO00401 505 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 ZBTB7BO15156 539 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 CLN3Q13286 438 aa11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 OGFOD1Q8N543 542 aa11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 ZFP42Q96MM3 310 aa11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 ZNF395Q9H8N7 513 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 DNAAF2Q9NVR5 837 aaKnown RBP11.17□□□□□ -0.62
CCDC88A-206ENST00000430086 FAM196BA6NMK8 535 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 RASA1P20936 1047 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 SCNN1DP51172 638 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 ESCO1Q5FWF5 840 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 C6orf118Q5T5N4 469 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 PBXIP1Q96AQ6 731 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 SENP2Q9HC62 589 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 ARHGEF10LQ9HCE6 1279 aa11.16□□□□□ -0.62
CCDC88A-206ENST00000430086 LARP1Q6PKG0 1096 aaKnown RBP11.15□□□□□ -0.62
CCDC88A-206ENST00000430086 XAGE2Q96GT9 111 aa11.15□□□□□ -0.62
CCDC88A-206ENST00000430086 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 GDF10P55107 478 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 PTK7Q13308 1070 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 SIX5Q8N196 739 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 KIFC2Q96AC6 838 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 ESYT1Q9BSJ8 1104 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 ETNK1Q9HBU6 452 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 KIAA1024Q9UPX6 916 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 HRH3Q9Y5N1 445 aa11.14□□□□□ -0.63
CCDC88A-206ENST00000430086 TMEM229AB2RXF0 380 aa11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 PPP1R15AO75807 674 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 IL2RAP01589 272 aa11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 INHAP05111 366 aa11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 PSME1Q06323 249 aa11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 CRTC2Q53ET0 693 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 INSM2Q96T92 566 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 RAB6BQ9NRW1 208 aa11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 GMPR2Q9P2T1 348 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-206ENST00000430086 SOS2Q07890 1332 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 DKK1O94907 266 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 GPC1P35052 558 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 RNF144AP50876 292 aaPredicted RBP11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 CCDC102BQ68D86 513 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 CNKSR1Q969H4 720 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 TRIM47Q96LD4 638 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 NLRP3Q96P20 1036 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 ARID3AQ99856 593 aa11.12□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L15C9J2P7 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L10C9JJH3 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L13C9JLJ4 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L12C9JPN9 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L11C9JVI0 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L21D6R901 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L18D6R9N7 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L22D6RA61 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L17D6RBQ6 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L19D6RCP7 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 USP17L20D6RJB6 530 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 MEN1O00255 615 aa11.11□□□□□ -0.63
CCDC88A-206ENST00000430086 STAU1O95793 577 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms