RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 AIDAQ96BJ3 306 aa18.13■□□□□ 0.49
PTPRF-206ENST00000429895 TMOD2Q9NZR1 351 aa18.13■□□□□ 0.49
PTPRF-206ENST00000429895 IGF1RP08069 1367 aa18.13■□□□□ 0.49
PTPRF-206ENST00000429895 RBM10P98175 930 aaKnown RBP18.13■□□□□ 0.49
PTPRF-206ENST00000429895 DDX11Q96FC9 970 aa18.13■□□□□ 0.49
PTPRF-206ENST00000429895 WDR33Q9C0J8 1336 aaKnown RBP18.12■□□□□ 0.49
PTPRF-206ENST00000429895 MYCNP04198 464 aaPredicted RBP18.12■□□□□ 0.49
PTPRF-206ENST00000429895 SCLT1Q96NL6 688 aa18.12■□□□□ 0.49
PTPRF-206ENST00000429895 LEKR1Q6ZMV7 388 aa18.12■□□□□ 0.49
PTPRF-206ENST00000429895 CEP57L1Q8IYX8 460 aa18.12■□□□□ 0.49
PTPRF-206ENST00000429895 NCOA2Q15596 1464 aa18.12■□□□□ 0.49
PTPRF-206ENST00000429895 PTCD1O75127 700 aaKnown RBP18.12■□□□□ 0.49
PTPRF-206ENST00000429895 METTL24Q5JXM2 366 aa18.12■□□□□ 0.49
PTPRF-206ENST00000429895 K7ELQ4 463 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-206ENST00000429895 ZNF219Q9P2Y4 722 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-206ENST00000429895 CTNNA3Q9UI47 895 aa18.11■□□□□ 0.49
PTPRF-206ENST00000429895 CHD1LQ86WJ1 897 aa18.11■□□□□ 0.49
PTPRF-206ENST00000429895 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
PTPRF-206ENST00000429895 POLR3DP05423 398 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-206ENST00000429895 CRACR2BQ8N4Y2 399 aaPredicted RBP18.11■□□□□ 0.49
PTPRF-206ENST00000429895 ATF7IPQ6VMQ6 1270 aa18.1■□□□□ 0.49
PTPRF-206ENST00000429895 MINDY4BA8MYZ0 360 aa18.1■□□□□ 0.49
PTPRF-206ENST00000429895 DHX8Q14562 1220 aaKnown RBP18.1■□□□□ 0.49
PTPRF-206ENST00000429895 PAXIP1Q6ZW49 1069 aaPredicted RBP18.1■□□□□ 0.49
PTPRF-206ENST00000429895 CBFA2T2O43439 604 aa18.1■□□□□ 0.49
PTPRF-206ENST00000429895 LRRFIP2Q9Y608 721 aaKnown RBP18.1■□□□□ 0.49
PTPRF-206ENST00000429895 STARD3NLO95772 234 aa18.09■□□□□ 0.49
PTPRF-206ENST00000429895 PDE3AQ14432 1141 aa18.09■□□□□ 0.49
PTPRF-206ENST00000429895 DESP17661 470 aa18.09■□□□□ 0.49
PTPRF-206ENST00000429895 EIF5P55010 431 aaKnown RBP18.09■□□□□ 0.49
PTPRF-206ENST00000429895 IMMTQ16891 758 aaKnown RBP18.09■□□□□ 0.49
PTPRF-206ENST00000429895 ANKIB1Q9P2G1 1089 aa18.09■□□□□ 0.49
PTPRF-206ENST00000429895 ZPR1O75312 459 aa18.09■□□□□ 0.49
PTPRF-206ENST00000429895 PPM1FP49593 454 aaPredicted RBP18.09■□□□□ 0.49
PTPRF-206ENST00000429895 SCAPERQ9BY12 1400 aa18.08■□□□□ 0.49
PTPRF-206ENST00000429895 MVPQ14764 893 aaKnown RBP18.08■□□□□ 0.49
PTPRF-206ENST00000429895 TXLNBQ8N3L3 684 aa18.08■□□□□ 0.49
PTPRF-206ENST00000429895 CASTP20810 708 aaKnown RBP18.08■□□□□ 0.48
PTPRF-206ENST00000429895 TTLL12Q14166 644 aaPredicted RBP18.08■□□□□ 0.48
PTPRF-206ENST00000429895 WDR78Q5VTH9 848 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 SEC63Q9UGP8 760 aaKnown RBP18.07■□□□□ 0.48
PTPRF-206ENST00000429895 GNAT3A8MTJ3 354 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 KIAA1328Q86T90 577 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 PRG4Q92954 1404 aaPredicted RBP18.07■□□□□ 0.48
PTPRF-206ENST00000429895 LRRC9Q6ZRR7 1453 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 RAPGEF3O95398 923 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 USHBP1Q8N6Y0 703 aa18.07■□□□□ 0.48
PTPRF-206ENST00000429895 TMOD3Q9NYL9 352 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 HSP90AB3PQ58FF7 597 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 MKNK2Q9HBH9 465 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 ADAMTS2O95450 1211 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 GBP2P32456 591 aaPredicted RBP18.06■□□□□ 0.48
PTPRF-206ENST00000429895 MYD88Q99836 296 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 CAMK4Q16566 473 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 WASF1Q92558 559 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 UPF3BQ9BZI7 483 aaKnown RBP18.06■□□□□ 0.48
PTPRF-206ENST00000429895 EXOC6BQ9Y2D4 811 aa18.06■□□□□ 0.48
PTPRF-206ENST00000429895 SYNJ2O15056 1496 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 TAF3Q5VWG9 929 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 UBA5Q9GZZ9 404 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 MCM10Q7L590 875 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 CAVIN4Q5BKX8 364 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 NUP62CLQ9H1M0 184 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 FILIP1Q7Z7B0 1213 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 WDR63Q8IWG1 891 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 CFAP45Q9UL16 551 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 AKNAQ7Z591 1439 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 ERBINQ96RT1 1412 aa18.05■□□□□ 0.48
PTPRF-206ENST00000429895 CCDC112Q8NEF3 446 aa18.04■□□□□ 0.48
PTPRF-206ENST00000429895 TNIP1Q15025 636 aa18.04■□□□□ 0.48
PTPRF-206ENST00000429895 BRPF3Q9ULD4 1205 aa18.04■□□□□ 0.48
PTPRF-206ENST00000429895 TAF4BQ92750 862 aa18.04■□□□□ 0.48
PTPRF-206ENST00000429895 ZNF652Q9Y2D9 606 aa18.04■□□□□ 0.48
PTPRF-206ENST00000429895 SMARCA5O60264 1052 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-206ENST00000429895 ZSCAN31Q96LW9 406 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-206ENST00000429895 KIAA0754O94854 1291 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 CCDC96Q2M329 555 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 THUMPD2Q9BTF0 503 aaKnown RBP18.03■□□□□ 0.48
PTPRF-206ENST00000429895 DZIP1Q86YF9 867 aaKnown RBP18.03■□□□□ 0.48
PTPRF-206ENST00000429895 EZRP15311 586 aaKnown RBP18.03■□□□□ 0.48
PTPRF-206ENST00000429895 KRT32Q14532 448 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 LIG1P18858 919 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 MPRIPQ6WCQ1 1025 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 CCDC82Q8N4S0 544 aa18.03■□□□□ 0.48
PTPRF-206ENST00000429895 EPB41L2O43491 1005 aaKnown RBP18.02■□□□□ 0.48
PTPRF-206ENST00000429895 TRIM21P19474 475 aaKnown RBP18.02■□□□□ 0.48
PTPRF-206ENST00000429895 JAKMIP3Q5VZ66 844 aa18.02■□□□□ 0.48
PTPRF-206ENST00000429895 PPP6R1Q9UPN7 881 aa18.02■□□□□ 0.48
PTPRF-206ENST00000429895 BOLA2Q9H3K6 86 aa18.02■□□□□ 0.47
PTPRF-206ENST00000429895 CEP131Q9UPN4 1083 aa18.02■□□□□ 0.47
PTPRF-206ENST00000429895 FERMT3Q86UX7 667 aa18.02■□□□□ 0.47
PTPRF-206ENST00000429895 POTEJP0CG39 1038 aa18.01■□□□□ 0.47
PTPRF-206ENST00000429895 CCDC83Q8IWF9 413 aa18.01■□□□□ 0.47
PTPRF-206ENST00000429895 NUDT16Q96DE0 195 aaKnown RBP18.01■□□□□ 0.47
PTPRF-206ENST00000429895 ERLIN1O75477 346 aa18.01■□□□□ 0.47
PTPRF-206ENST00000429895 PPP4R3AQ6IN85 833 aa18.01■□□□□ 0.47
PTPRF-206ENST00000429895 DUSP27Q5VZP5 1158 aa18.01■□□□□ 0.47
PTPRF-206ENST00000429895 PRPF40BQ6NWY9 871 aaKnown RBP18.01■□□□□ 0.47
PTPRF-206ENST00000429895 TRMT1LQ7Z2T5 733 aaKnown RBP18.01■□□□□ 0.47
PTPRF-206ENST00000429895 CFTRP13569 1480 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms