RNA–Protein interactions for RNA: ENST00000428842.1

HMGCLL1-206, Transcript of 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1, humanhuman

TSL 1 (best) BASIC

Gene HMGCLL1, Length 2,437 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLL1-206ENST00000428842 COL22A1Q8NFW1 1626 aaPredicted RBP12.51□□□□□ -0.41
HMGCLL1-206ENST00000428842 ZNF521Q96K83 1311 aa12.51□□□□□ -0.41
HMGCLL1-206ENST00000428842 PLCH1Q4KWH8 1693 aa12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 A0A0G2JS52 829 aa12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 MYT1Q01538 1121 aa12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 FAM98CQ17RN3 349 aaKnown RBP12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 ZNF530Q6P9A1 599 aaPredicted RBP12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 BCL2L13Q9BXK5 485 aa12.5□□□□□ -0.41
HMGCLL1-206ENST00000428842 IL17REQ8NFR9 667 aa12.49□□□□□ -0.41
HMGCLL1-206ENST00000428842 FAM208AQ9UK61 1670 aaKnown RBP12.49□□□□□ -0.41
HMGCLL1-206ENST00000428842 CYP27B1O15528 508 aa12.49□□□□□ -0.41
HMGCLL1-206ENST00000428842 RAPGEF4Q8WZA2 1011 aa12.49□□□□□ -0.41
HMGCLL1-206ENST00000428842 USP21Q9UK80 565 aa12.48□□□□□ -0.41
HMGCLL1-206ENST00000428842 BCL9LQ86UU0 1499 aa12.48□□□□□ -0.41
HMGCLL1-206ENST00000428842 PLIN1O60240 522 aa12.48□□□□□ -0.41
HMGCLL1-206ENST00000428842 AFF2P51816 1311 aa12.48□□□□□ -0.41
HMGCLL1-206ENST00000428842 KCNQ3O43525 872 aa12.47□□□□□ -0.41
HMGCLL1-206ENST00000428842 NEFMP07197 916 aa12.47□□□□□ -0.41
HMGCLL1-206ENST00000428842 GOLGA2Q08379 1002 aa12.47□□□□□ -0.41
HMGCLL1-206ENST00000428842 DUSP27Q5VZP5 1158 aa12.47□□□□□ -0.41
HMGCLL1-206ENST00000428842 KIF24Q5T7B8 1368 aa12.47□□□□□ -0.41
HMGCLL1-206ENST00000428842 TSPYL6Q8N831 410 aa12.46□□□□□ -0.41
HMGCLL1-206ENST00000428842 NECTIN2Q92692 538 aa12.46□□□□□ -0.41
HMGCLL1-206ENST00000428842 SLFN5Q08AF3 891 aa12.46□□□□□ -0.42
HMGCLL1-206ENST00000428842 PTF1AQ7RTS3 328 aa12.46□□□□□ -0.42
HMGCLL1-206ENST00000428842 COL14A1Q05707 1796 aaKnown RBP12.45□□□□□ -0.42
HMGCLL1-206ENST00000428842 SLC39A6Q13433 755 aa12.45□□□□□ -0.42
HMGCLL1-206ENST00000428842 TATP17735 454 aaPredicted RBP12.45□□□□□ -0.42
HMGCLL1-206ENST00000428842 CARD10Q9BWT7 1032 aa12.45□□□□□ -0.42
HMGCLL1-206ENST00000428842 CRB1P82279 1406 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 PRAMEF22A3QJZ6 481 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 GNAT3A8MTJ3 354 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 IL2RBP14784 551 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 UNC5CLQ8IV45 518 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 MBIPQ9NS73 344 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 SPATA31A1Q5TZJ5 1347 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 FANCIQ9NVI1 1328 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 SLIT2O94813 1529 aa12.44□□□□□ -0.42
HMGCLL1-206ENST00000428842 BCAR3O75815 825 aa12.43□□□□□ -0.42
HMGCLL1-206ENST00000428842 EXOSC9Q06265 439 aaKnown RBP12.43□□□□□ -0.42
HMGCLL1-206ENST00000428842 ACSBG1Q96GR2 724 aa12.43□□□□□ -0.42
HMGCLL1-206ENST00000428842 NFATC2IPQ8NCF5 419 aa12.43□□□□□ -0.42
HMGCLL1-206ENST00000428842 TNNQ9UQP3 1299 aa12.43□□□□□ -0.42
HMGCLL1-206ENST00000428842 NRAPQ86VF7 1730 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 RTF1Q92541 710 aaKnown RBP12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 ZNF428Q96B54 188 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 SYTL4Q96C24 671 aaPredicted RBP12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 SPATA31A6Q5VVP1 1343 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 PHKG2P15735 406 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 PLEKHO1Q53GL0 409 aaPredicted RBP12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 C8orf58Q8NAV2 365 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 ZCRB1Q8TBF4 217 aaKnown RBP12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 SPATA31A5Q5VU36 1347 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 SPATA31A7Q8IWB4 1347 aa12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 VIRMAQ69YN4 1812 aaKnown RBP12.42□□□□□ -0.42
HMGCLL1-206ENST00000428842 C1orf141Q5JVX7 400 aa12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 FNBP4Q8N3X1 1017 aaPredicted RBP12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 FBXO41Q8TF61 875 aa12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 MAP3K5Q99683 1374 aa12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 PIP4K2AP48426 406 aaPredicted RBP12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 QTRT2Q9H974 415 aaKnown RBP12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 KDM6AO15550 1401 aaPredicted RBP12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 NCAPD2Q15021 1401 aa12.41□□□□□ -0.42
HMGCLL1-206ENST00000428842 GAS2L2Q8NHY3 880 aa12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 RGS17Q9UGC6 210 aaPredicted RBP12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 KCNQ2O43526 872 aa12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 KCNQ4P56696 695 aa12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 ILDR1Q86SU0 546 aaPredicted RBP12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 PNNQ9H307 717 aaKnown RBP12.4□□□□□ -0.42
HMGCLL1-206ENST00000428842 SHANK3Q9BYB0 1731 aa12.39□□□□□ -0.43
HMGCLL1-206ENST00000428842 C20orf194Q5TEA3 1177 aa12.39□□□□□ -0.43
HMGCLL1-206ENST00000428842 OVOS2A0A0G2JMS6 1433 aa12.39□□□□□ -0.43
HMGCLL1-206ENST00000428842 RNMTO43148 476 aaKnown RBP12.39□□□□□ -0.43
HMGCLL1-206ENST00000428842 MARCH10Q8NA82 808 aaPredicted RBP12.39□□□□□ -0.43
HMGCLL1-206ENST00000428842 AKAP4Q5JQC9 854 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 TRMT2AQ8IZ69 625 aaKnown RBP12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 TSPYL4Q9UJ04 414 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 E9PSI1 815 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 ANXA1P04083 346 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 CCDC27Q2M243 656 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 SPG7Q9UQ90 795 aa12.38□□□□□ -0.43
HMGCLL1-206ENST00000428842 DDB1Q16531 1140 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 GJD4Q96KN9 370 aaPredicted RBP12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 EXOC5O00471 708 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 PTCD1O75127 700 aaKnown RBP12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 TEFQ10587 303 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 WDR63Q8IWG1 891 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 IFNL2Q8IZJ0 200 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 FRAT1Q92837 279 aaPredicted RBP12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 RCAN3Q9UKA8 241 aa12.37□□□□□ -0.43
HMGCLL1-206ENST00000428842 ZNF853P0CG23 659 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 VPS72Q15906 364 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 AMOTQ4VCS5 1084 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 POTEAQ6S8J7 498 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 CFAP44Q96MT7 982 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 GLI3P10071 1580 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 CLUAP1Q96AJ1 413 aa12.36□□□□□ -0.43
HMGCLL1-206ENST00000428842 DISP2A7MBM2 1401 aa12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 BTBD11A6QL63 1104 aa12.35□□□□□ -0.43
HMGCLL1-206ENST00000428842 PRIM1P49642 420 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms