RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 NLRP13Q86W25 1043 aa12.29□□□□□ -0.44
HDAC1-202ENST00000428704 DNAJC5GQ8N7S2 189 aa12.29□□□□□ -0.44
HDAC1-202ENST00000428704 L3MBTL2Q969R5 705 aa12.29□□□□□ -0.44
HDAC1-202ENST00000428704 NUDT16Q96DE0 195 aaKnown RBP12.29□□□□□ -0.44
HDAC1-202ENST00000428704 EXOC5O00471 708 aa12.28□□□□□ -0.44
HDAC1-202ENST00000428704 NBPF1Q3BBV0 1214 aa12.28□□□□□ -0.44
HDAC1-202ENST00000428704 SPOCK2Q92563 424 aa12.28□□□□□ -0.44
HDAC1-202ENST00000428704 KIF3CO14782 793 aa12.27□□□□□ -0.45
HDAC1-202ENST00000428704 ACSBG1Q96GR2 724 aa12.27□□□□□ -0.45
HDAC1-202ENST00000428704 ACEP12821 1306 aa12.27□□□□□ -0.45
HDAC1-202ENST00000428704 DIEXFQ68CQ4 756 aaKnown RBP12.26□□□□□ -0.45
HDAC1-202ENST00000428704 BRD4O60885 1362 aaPredicted RBP12.26□□□□□ -0.45
HDAC1-202ENST00000428704 PAPPAQ13219 1627 aa12.26□□□□□ -0.45
HDAC1-202ENST00000428704 PNPLA7Q6ZV29 1317 aa12.25□□□□□ -0.45
HDAC1-202ENST00000428704 WDR17Q8IZU2 1322 aa12.25□□□□□ -0.45
HDAC1-202ENST00000428704 POLR3AO14802 1390 aaPredicted RBP12.25□□□□□ -0.45
HDAC1-202ENST00000428704 NEUROD1Q13562 356 aa12.24□□□□□ -0.45
HDAC1-202ENST00000428704 LRRC4BQ9NT99 713 aa12.24□□□□□ -0.45
HDAC1-202ENST00000428704 TFCP2L1Q9NZI6 479 aa12.24□□□□□ -0.45
HDAC1-202ENST00000428704 CSB-PGBD3P0DP91 1061 aa12.23□□□□□ -0.45
HDAC1-202ENST00000428704 NUBP1P53384 320 aa12.23□□□□□ -0.45
HDAC1-202ENST00000428704 KLRG1Q96E93 195 aa12.22□□□□□ -0.45
HDAC1-202ENST00000428704 CARD10Q9BWT7 1032 aa12.22□□□□□ -0.45
HDAC1-202ENST00000428704 USP6P35125 1406 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 TNS2Q63HR2 1409 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 AKAP12Q02952 1782 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 TOMM70O94826 608 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 SLC27A3Q5K4L6 730 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 JMYQ8N9B5 988 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 CCDC61Q9Y6R9 512 aa12.21□□□□□ -0.45
HDAC1-202ENST00000428704 PLEKHG3A1L390 1219 aa12.2□□□□□ -0.46
HDAC1-202ENST00000428704 NLRP6P59044 892 aa12.2□□□□□ -0.46
HDAC1-202ENST00000428704 CDK19Q9BWU1 502 aa12.2□□□□□ -0.46
HDAC1-202ENST00000428704 WWC3Q9ULE0 1092 aa12.2□□□□□ -0.46
HDAC1-202ENST00000428704 AXIN2Q9Y2T1 843 aa12.2□□□□□ -0.46
HDAC1-202ENST00000428704 NHSQ6T4R5 1651 aa12.19□□□□□ -0.46
HDAC1-202ENST00000428704 HTRA3P83110 453 aa12.19□□□□□ -0.46
HDAC1-202ENST00000428704 CENPJQ9HC77 1338 aaPredicted RBP12.18□□□□□ -0.46
HDAC1-202ENST00000428704 MSL1Q68DK7 614 aa12.18□□□□□ -0.46
HDAC1-202ENST00000428704 CD2APQ9Y5K6 639 aa12.18□□□□□ -0.46
HDAC1-202ENST00000428704 ROCK2O75116 1388 aaKnown RBP12.18□□□□□ -0.46
HDAC1-202ENST00000428704 CCDC7Q96M83 1385 aa12.18□□□□□ -0.46
HDAC1-202ENST00000428704 WNK3Q9BYP7 1800 aa12.17□□□□□ -0.46
HDAC1-202ENST00000428704 RASEFQ8IZ41 740 aa12.17□□□□□ -0.46
HDAC1-202ENST00000428704 TONSLQ96HA7 1378 aa12.17□□□□□ -0.46
HDAC1-202ENST00000428704 PCDH10Q9P2E7 1040 aa12.16□□□□□ -0.46
HDAC1-202ENST00000428704 COL24A1Q17RW2 1714 aa12.16□□□□□ -0.46
HDAC1-202ENST00000428704 CPSF1Q10570 1443 aaKnown RBP12.15□□□□□ -0.46
HDAC1-202ENST00000428704 PPIP5K1Q6PFW1 1433 aa12.15□□□□□ -0.46
HDAC1-202ENST00000428704 C19orf67A6NJJ6 358 aa12.15□□□□□ -0.46
HDAC1-202ENST00000428704 KCNQ4P56696 695 aa12.15□□□□□ -0.46
HDAC1-202ENST00000428704 SLIT3O75094 1523 aa12.15□□□□□ -0.46
HDAC1-202ENST00000428704 C16orf71Q8IYS4 520 aaPredicted RBP12.14□□□□□ -0.47
HDAC1-202ENST00000428704 ABCC6O95255 1503 aa12.14□□□□□ -0.47
HDAC1-202ENST00000428704 IGSF1Q8N6C5 1336 aa12.13□□□□□ -0.47
HDAC1-202ENST00000428704 SOX12O15370 315 aa12.13□□□□□ -0.47
HDAC1-202ENST00000428704 COL23A1Q86Y22 540 aaPredicted RBP12.13□□□□□ -0.47
HDAC1-202ENST00000428704 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
HDAC1-202ENST00000428704 FAM212AQ96EL1 285 aa12.13□□□□□ -0.47
HDAC1-202ENST00000428704 QSER1Q2KHR3 1735 aa12.13□□□□□ -0.47
HDAC1-202ENST00000428704 BTAF1O14981 1849 aa12.12□□□□□ -0.47
HDAC1-202ENST00000428704 HAX1O00165 279 aa12.12□□□□□ -0.47
HDAC1-202ENST00000428704 CD44P16070 742 aaKnown RBP12.12□□□□□ -0.47
HDAC1-202ENST00000428704 ARHGEF25Q86VW2 580 aa12.12□□□□□ -0.47
HDAC1-202ENST00000428704 NMRK2Q9NPI5 230 aa12.12□□□□□ -0.47
HDAC1-202ENST00000428704 SBNO2Q9Y2G9 1366 aa12.12□□□□□ -0.47
HDAC1-202ENST00000428704 MON2Q7Z3U7 1717 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 WDR90Q96KV7 1748 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 PIK3C2AO00443 1686 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 HSPA1AP0DMV8 641 aaKnown RBP12.11□□□□□ -0.47
HDAC1-202ENST00000428704 HSPA1BP0DMV9 641 aaKnown RBP12.11□□□□□ -0.47
HDAC1-202ENST00000428704 IL2RBP14784 551 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 GSE1Q14687 1217 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 KCNH5Q8NCM2 988 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 SYTL4Q96C24 671 aaPredicted RBP12.11□□□□□ -0.47
HDAC1-202ENST00000428704 CABP2Q9NPB3 220 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 PCNTO95613 3336 aa12.11□□□□□ -0.47
HDAC1-202ENST00000428704 COL18A1P39060 1754 aa12.1□□□□□ -0.47
HDAC1-202ENST00000428704 SRPK2P78362 688 aaKnown RBP12.1□□□□□ -0.47
HDAC1-202ENST00000428704 FSTL1Q12841 308 aa12.1□□□□□ -0.47
HDAC1-202ENST00000428704 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
HDAC1-202ENST00000428704 CCNL1Q9UK58 526 aaPredicted RBP12.1□□□□□ -0.47
HDAC1-202ENST00000428704 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
HDAC1-202ENST00000428704 NLRP2Q9NX02 1062 aa12.09□□□□□ -0.47
HDAC1-202ENST00000428704 CARD11Q9BXL7 1154 aa12.08□□□□□ -0.48
HDAC1-202ENST00000428704 EVC2Q86UK5 1308 aa12.08□□□□□ -0.48
HDAC1-202ENST00000428704 DDX54Q8TDD1 881 aaKnown RBP12.07□□□□□ -0.48
HDAC1-202ENST00000428704 CIZ1Q9ULV3 898 aaPredicted RBP12.07□□□□□ -0.48
HDAC1-202ENST00000428704 TUBGCP6Q96RT7 1819 aa12.07□□□□□ -0.48
HDAC1-202ENST00000428704 AMER1Q5JTC6 1135 aaPredicted RBP12.06□□□□□ -0.48
HDAC1-202ENST00000428704 CABP1Q9NZU7 370 aa12.06□□□□□ -0.48
HDAC1-202ENST00000428704 USP54Q70EL1 1684 aa12.06□□□□□ -0.48
HDAC1-202ENST00000428704 PRIM1P49642 420 aaKnown RBP12.05□□□□□ -0.48
HDAC1-202ENST00000428704 FLAD1Q8NFF5 587 aa12.05□□□□□ -0.48
HDAC1-202ENST00000428704 CD163L1Q9NR16 1453 aa12.05□□□□□ -0.48
HDAC1-202ENST00000428704 ERBB3P21860 1342 aa12.04□□□□□ -0.48
HDAC1-202ENST00000428704 ANKRD36BQ8N2N9 1353 aa12.04□□□□□ -0.48
HDAC1-202ENST00000428704 TESK2Q96S53 571 aa12.03□□□□□ -0.48
HDAC1-202ENST00000428704 CICQ96RK0 1608 aaPredicted RBP12.03□□□□□ -0.48
HDAC1-202ENST00000428704 EVX2Q03828 476 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms