RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 SALL2Q9Y467 1007 aaPredicted RBP10.43□□□□□ -0.74
HMGA1P4-201ENST00000428643 OVOS2A0A0G2JMS6 1433 aa10.42□□□□□ -0.74
HMGA1P4-201ENST00000428643 NFE2L2Q16236 605 aa10.42□□□□□ -0.74
HMGA1P4-201ENST00000428643 PLEKHO1Q53GL0 409 aaPredicted RBP10.42□□□□□ -0.74
HMGA1P4-201ENST00000428643 ZNF530Q6P9A1 599 aaPredicted RBP10.42□□□□□ -0.74
HMGA1P4-201ENST00000428643 GAS2L2Q8NHY3 880 aa10.42□□□□□ -0.74
HMGA1P4-201ENST00000428643 ATRNO75882 1429 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 PLEKHG2Q9H7P9 1386 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 A0A0G2JS52 829 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 MYT1Q01538 1121 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 AMOTQ4VCS5 1084 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 RGS17Q9UGC6 210 aaPredicted RBP10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 TRPC5Q9UL62 973 aaPredicted RBP10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 RGPD2P0DJD1 1756 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 DISP2A7MBM2 1401 aa10.41□□□□□ -0.74
HMGA1P4-201ENST00000428643 TMPOP42166 694 aaKnown RBP10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 RIPK4P57078 832 aa10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 LMOD3Q0VAK6 560 aa10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 MTHFSDQ2M296 383 aaKnown RBP10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 C1orf141Q5JVX7 400 aa10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 ZNF772Q68DY9 489 aaPredicted RBP10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 SPG7Q9UQ90 795 aa10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 THRAP3Q9Y2W1 955 aaKnown RBP10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.4□□□□□ -0.74
HMGA1P4-201ENST00000428643 MAP3K5Q99683 1374 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 ZBED9Q6R2W3 1325 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 PCDH11XQ9BZA7 1347 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 PCDH11YQ9BZA8 1340 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 PARP4Q9UKK3 1724 aaKnown RBP10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 FAM98CQ17RN3 349 aaKnown RBP10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 NGEFQ8N5V2 710 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 ZCRB1Q8TBF4 217 aaKnown RBP10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 CDCA7Q9BWT1 371 aaPredicted RBP10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 TNS2Q63HR2 1409 aa10.39□□□□□ -0.75
HMGA1P4-201ENST00000428643 BARGINQ6ZT62 677 aa10.38□□□□□ -0.75
HMGA1P4-201ENST00000428643 GJD4Q96KN9 370 aaPredicted RBP10.38□□□□□ -0.75
HMGA1P4-201ENST00000428643 QTRT2Q9H974 415 aaKnown RBP10.38□□□□□ -0.75
HMGA1P4-201ENST00000428643 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.38□□□□□ -0.75
HMGA1P4-201ENST00000428643 GNAT3A8MTJ3 354 aa10.37□□□□□ -0.75
HMGA1P4-201ENST00000428643 DDB1Q16531 1140 aa10.37□□□□□ -0.75
HMGA1P4-201ENST00000428643 DDX54Q8TDD1 881 aaKnown RBP10.37□□□□□ -0.75
HMGA1P4-201ENST00000428643 RTF1Q92541 710 aaKnown RBP10.37□□□□□ -0.75
HMGA1P4-201ENST00000428643 GLI3P10071 1580 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 PHKG2P15735 406 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 CCDC27Q2M243 656 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 AKAP4Q5JQC9 854 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 MCM10Q7L590 875 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 WWC1Q8IX03 1113 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 THUMPD2Q9BTF0 503 aaKnown RBP10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 TRIM35Q9UPQ4 493 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 LRRC37A3O60309 1634 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 PKD1L3Q7Z443 1732 aa10.36□□□□□ -0.75
HMGA1P4-201ENST00000428643 EXOC5O00471 708 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 CYP27B1O15528 508 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 CALD1Q05682 793 aaKnown RBP10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 DCTN1Q14203 1278 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 MPRIPQ6WCQ1 1025 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 IFNL2Q8IZJ0 200 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 WNK3Q9BYP7 1800 aa10.35□□□□□ -0.75
HMGA1P4-201ENST00000428643 ZNF521Q96K83 1311 aa10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 HTATSF1O43719 755 aaKnown RBP10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 HSP90AB1P08238 724 aaKnown RBP10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 RBM6P78332 1123 aaKnown RBP10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 NCBP3Q53F19 620 aaKnown RBP10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 THSD7AQ9UPZ6 1657 aa10.34□□□□□ -0.75
HMGA1P4-201ENST00000428643 KDM6AO15550 1401 aaPredicted RBP10.33□□□□□ -0.76
HMGA1P4-201ENST00000428643 GOLGA2Q08379 1002 aa10.33□□□□□ -0.76
HMGA1P4-201ENST00000428643 PDE3BQ13370 1112 aa10.33□□□□□ -0.76
HMGA1P4-201ENST00000428643 SEPT12Q8IYM1 358 aa10.33□□□□□ -0.76
HMGA1P4-201ENST00000428643 RNMTO43148 476 aaKnown RBP10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 RXRBP28702 533 aa10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 TEFQ10587 303 aa10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 WDR63Q8IWG1 891 aa10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 DCAF5Q96JK2 942 aa10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 LAS1LQ9Y4W2 734 aaKnown RBP10.32□□□□□ -0.76
HMGA1P4-201ENST00000428643 CEMIPQ8WUJ3 1361 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 E9PSI1 815 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 POTEAQ6S8J7 498 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 MARCH10Q8NA82 808 aaPredicted RBP10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 IL17REQ8NFR9 667 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 MYH16Q9H6N6 1097 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 LGR6Q9HBX8 967 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 IL16Q14005 1332 aa10.31□□□□□ -0.76
HMGA1P4-201ENST00000428643 ONECUT3O60422 494 aaPredicted RBP10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 CABP4P57796 275 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 GNAI1P63096 354 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 NKX1-1Q15270 411 aaPredicted RBP10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 CDCA7LQ96GN5 454 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 IFT57Q9NWB7 429 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 RGS12O14924 1447 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 SHANK3Q9BYB0 1731 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 MRC1P22897 1456 aa10.3□□□□□ -0.76
HMGA1P4-201ENST00000428643 CENPBP07199 599 aaPredicted RBP10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 TSR2Q969E8 191 aaKnown RBP10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 SYTL4Q96C24 671 aaPredicted RBP10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 SLC52A2Q9HAB3 445 aa10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 SPINK5Q9NQ38 1064 aaPredicted RBP10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 FANCIQ9NVI1 1328 aa10.29□□□□□ -0.76
HMGA1P4-201ENST00000428643 SLFN5Q08AF3 891 aa10.28□□□□□ -0.76
HMGA1P4-201ENST00000428643 CFAP44Q96MT7 982 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms