RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 VPS72Q15906 364 aa16.44■□□□□ 0.22
TRIM39-207ENST00000428404 MEGF6O75095 1541 aa16.44■□□□□ 0.22
TRIM39-207ENST00000428404 SPATA31A1Q5TZJ5 1347 aa16.44■□□□□ 0.22
TRIM39-207ENST00000428404 SPATA31A5Q5VU36 1347 aa16.44■□□□□ 0.22
TRIM39-207ENST00000428404 SPATA31A7Q8IWB4 1347 aa16.44■□□□□ 0.22
TRIM39-207ENST00000428404 PDE3BQ13370 1112 aa16.43■□□□□ 0.22
TRIM39-207ENST00000428404 MEX3CQ5U5Q3 659 aaKnown RBP16.43■□□□□ 0.22
TRIM39-207ENST00000428404 WDR63Q8IWG1 891 aa16.43■□□□□ 0.22
TRIM39-207ENST00000428404 OVOS2A0A0G2JMS6 1433 aa16.43■□□□□ 0.22
TRIM39-207ENST00000428404 HTATSF1O43719 755 aaKnown RBP16.42■□□□□ 0.22
TRIM39-207ENST00000428404 IL2RBP14784 551 aa16.42■□□□□ 0.22
TRIM39-207ENST00000428404 THRAP3Q9Y2W1 955 aaKnown RBP16.42■□□□□ 0.22
TRIM39-207ENST00000428404 LMOD3Q0VAK6 560 aa16.41■□□□□ 0.22
TRIM39-207ENST00000428404 USP21Q9UK80 565 aa16.41■□□□□ 0.22
TRIM39-207ENST00000428404 DISP2A7MBM2 1401 aa16.41■□□□□ 0.22
TRIM39-207ENST00000428404 AFF2P51816 1311 aa16.41■□□□□ 0.22
TRIM39-207ENST00000428404 USP35Q9P2H5 1018 aa16.4■□□□□ 0.22
TRIM39-207ENST00000428404 SPG7Q9UQ90 795 aa16.4■□□□□ 0.22
TRIM39-207ENST00000428404 GNAT3A8MTJ3 354 aa16.39■□□□□ 0.21
TRIM39-207ENST00000428404 GOLGA2Q08379 1002 aa16.39■□□□□ 0.21
TRIM39-207ENST00000428404 ZNF530Q6P9A1 599 aaPredicted RBP16.39■□□□□ 0.21
TRIM39-207ENST00000428404 BARGINQ6ZT62 677 aa16.39■□□□□ 0.21
TRIM39-207ENST00000428404 TRMT2AQ8IZ69 625 aaKnown RBP16.39■□□□□ 0.21
TRIM39-207ENST00000428404 CDCA7LQ96GN5 454 aa16.39■□□□□ 0.21
TRIM39-207ENST00000428404 CDCA7Q9BWT1 371 aaPredicted RBP16.39■□□□□ 0.21
TRIM39-207ENST00000428404 IL16Q14005 1332 aa16.39■□□□□ 0.21
TRIM39-207ENST00000428404 SLFN5Q08AF3 891 aa16.38■□□□□ 0.21
TRIM39-207ENST00000428404 AKAP4Q5JQC9 854 aa16.38■□□□□ 0.21
TRIM39-207ENST00000428404 ZCRB1Q8TBF4 217 aaKnown RBP16.38■□□□□ 0.21
TRIM39-207ENST00000428404 SPINK5Q9NQ38 1064 aaPredicted RBP16.38■□□□□ 0.21
TRIM39-207ENST00000428404 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.38■□□□□ 0.21
TRIM39-207ENST00000428404 MAP3K5Q99683 1374 aa16.38■□□□□ 0.21
TRIM39-207ENST00000428404 CYP27B1O15528 508 aa16.37■□□□□ 0.21
TRIM39-207ENST00000428404 IL17REQ8NFR9 667 aa16.37■□□□□ 0.21
TRIM39-207ENST00000428404 ATRNO75882 1429 aa16.36■□□□□ 0.21
TRIM39-207ENST00000428404 PHKG2P15735 406 aa16.36■□□□□ 0.21
TRIM39-207ENST00000428404 DCTN1Q14203 1278 aa16.36■□□□□ 0.21
TRIM39-207ENST00000428404 THUMPD2Q9BTF0 503 aaKnown RBP16.36■□□□□ 0.21
TRIM39-207ENST00000428404 DLG5Q8TDM6 1919 aa16.36■□□□□ 0.21
TRIM39-207ENST00000428404 PKD1L3Q7Z443 1732 aa16.36■□□□□ 0.21
TRIM39-207ENST00000428404 E9PSI1 815 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 CENPBP07199 599 aaPredicted RBP16.35■□□□□ 0.21
TRIM39-207ENST00000428404 ZNF853P0CG23 659 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 CALD1Q05682 793 aaKnown RBP16.35■□□□□ 0.21
TRIM39-207ENST00000428404 C1orf141Q5JVX7 400 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 MCM10Q7L590 875 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 IFNL2Q8IZJ0 200 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 RTF1Q92541 710 aaKnown RBP16.35■□□□□ 0.21
TRIM39-207ENST00000428404 PARP4Q9UKK3 1724 aaKnown RBP16.35■□□□□ 0.21
TRIM39-207ENST00000428404 CEMIPQ8WUJ3 1361 aa16.35■□□□□ 0.21
TRIM39-207ENST00000428404 NKX1-1Q15270 411 aaPredicted RBP16.34■□□□□ 0.21
TRIM39-207ENST00000428404 DUSP27Q5VZP5 1158 aa16.34■□□□□ 0.21
TRIM39-207ENST00000428404 GJD4Q96KN9 370 aaPredicted RBP16.34■□□□□ 0.21
TRIM39-207ENST00000428404 TRPC5Q9UL62 973 aaPredicted RBP16.34■□□□□ 0.21
TRIM39-207ENST00000428404 CCDC9Q9Y3X0 531 aaKnown RBP16.34■□□□□ 0.21
TRIM39-207ENST00000428404 ONECUT3O60422 494 aaPredicted RBP16.33■□□□□ 0.2
TRIM39-207ENST00000428404 QTRT2Q9H974 415 aaKnown RBP16.33■□□□□ 0.2
TRIM39-207ENST00000428404 LGR6Q9HBX8 967 aa16.33■□□□□ 0.2
TRIM39-207ENST00000428404 PCDH11XQ9BZA7 1347 aa16.33■□□□□ 0.2
TRIM39-207ENST00000428404 PCDH11YQ9BZA8 1340 aa16.33■□□□□ 0.2
TRIM39-207ENST00000428404 EXOC5O00471 708 aa16.32■□□□□ 0.2
TRIM39-207ENST00000428404 RNMTO43148 476 aaKnown RBP16.32■□□□□ 0.2
TRIM39-207ENST00000428404 MPRIPQ6WCQ1 1025 aa16.32■□□□□ 0.2
TRIM39-207ENST00000428404 IFT57Q9NWB7 429 aa16.32■□□□□ 0.2
TRIM39-207ENST00000428404 CHL1O00533 1208 aa16.31■□□□□ 0.2
TRIM39-207ENST00000428404 HSP90AB1P08238 724 aaKnown RBP16.31■□□□□ 0.2
TRIM39-207ENST00000428404 FAM98CQ17RN3 349 aaKnown RBP16.31■□□□□ 0.2
TRIM39-207ENST00000428404 DCAF5Q96JK2 942 aa16.31■□□□□ 0.2
TRIM39-207ENST00000428404 CFAP44Q96MT7 982 aa16.31■□□□□ 0.2
TRIM39-207ENST00000428404 MYH16Q9H6N6 1097 aa16.31■□□□□ 0.2
TRIM39-207ENST00000428404 ADAMTS7Q9UKP4 1686 aa16.3■□□□□ 0.2
TRIM39-207ENST00000428404 GNAI1P63096 354 aa16.3■□□□□ 0.2
TRIM39-207ENST00000428404 ZNF772Q68DY9 489 aaPredicted RBP16.3■□□□□ 0.2
TRIM39-207ENST00000428404 GLI3P10071 1580 aa16.3■□□□□ 0.2
TRIM39-207ENST00000428404 KDM6AO15550 1401 aaPredicted RBP16.29■□□□□ 0.2
TRIM39-207ENST00000428404 TNS2Q63HR2 1409 aa16.29■□□□□ 0.2
TRIM39-207ENST00000428404 WNK3Q9BYP7 1800 aa16.29■□□□□ 0.2
TRIM39-207ENST00000428404 SHANK3Q9BYB0 1731 aa16.29■□□□□ 0.2
TRIM39-207ENST00000428404 DDB1Q16531 1140 aa16.29■□□□□ 0.2
TRIM39-207ENST00000428404 DDX54Q8TDD1 881 aaKnown RBP16.29■□□□□ 0.2
TRIM39-207ENST00000428404 BABAM1Q9NWV8 329 aa16.29■□□□□ 0.2
TRIM39-207ENST00000428404 LRRC37A3O60309 1634 aa16.28■□□□□ 0.2
TRIM39-207ENST00000428404 TAF7Q15545 349 aaPredicted RBP16.28■□□□□ 0.2
TRIM39-207ENST00000428404 FANCIQ9NVI1 1328 aa16.27■□□□□ 0.2
TRIM39-207ENST00000428404 MBIPQ9NS73 344 aa16.27■□□□□ 0.2
TRIM39-207ENST00000428404 ERVV-2B6SEH9 535 aa16.26■□□□□ 0.19
TRIM39-207ENST00000428404 TSR2Q969E8 191 aaKnown RBP16.26■□□□□ 0.19
TRIM39-207ENST00000428404 RGS17Q9UGC6 210 aaPredicted RBP16.26■□□□□ 0.19
TRIM39-207ENST00000428404 THSD7AQ9UPZ6 1657 aa16.26■□□□□ 0.19
TRIM39-207ENST00000428404 TEFQ10587 303 aa16.25■□□□□ 0.19
TRIM39-207ENST00000428404 MARCH10Q8NA82 808 aaPredicted RBP16.25■□□□□ 0.19
TRIM39-207ENST00000428404 SLC52A2Q9HAB3 445 aa16.25■□□□□ 0.19
TRIM39-207ENST00000428404 LAS1LQ9Y4W2 734 aaKnown RBP16.25■□□□□ 0.19
TRIM39-207ENST00000428404 MRC1P22897 1456 aa16.24■□□□□ 0.19
TRIM39-207ENST00000428404 ILDR1Q86SU0 546 aaPredicted RBP16.24■□□□□ 0.19
TRIM39-207ENST00000428404 MIS18AQ9NYP9 233 aa16.24■□□□□ 0.19
TRIM39-207ENST00000428404 SCN11AQ9UI33 1791 aa16.23■□□□□ 0.19
TRIM39-207ENST00000428404 RBM6P78332 1123 aaKnown RBP16.23■□□□□ 0.19
TRIM39-207ENST00000428404 NFATC2IPQ8NCF5 419 aa16.23■□□□□ 0.19
TRIM39-207ENST00000428404 TSPYL4Q9UJ04 414 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms