RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 RGPD1P0DJD0 1748 aa13.23□□□□□ -0.29
HDAC9-210ENST00000428307 LRRC59Q96AG4 307 aaKnown RBP13.22□□□□□ -0.29
HDAC9-210ENST00000428307 TSPYL4Q9UJ04 414 aa13.22□□□□□ -0.29
HDAC9-210ENST00000428307 GNAT3A8MTJ3 354 aa13.22□□□□□ -0.29
HDAC9-210ENST00000428307 ARHGAP45Q92619 1136 aa13.22□□□□□ -0.29
HDAC9-210ENST00000428307 C1orf167Q5SNV9 1468 aa13.22□□□□□ -0.29
HDAC9-210ENST00000428307 CRB1P82279 1406 aa13.21□□□□□ -0.29
HDAC9-210ENST00000428307 PDZRN3Q9UPQ7 1066 aa13.21□□□□□ -0.29
HDAC9-210ENST00000428307 FAM161AQ3B820 660 aa13.21□□□□□ -0.3
HDAC9-210ENST00000428307 ARHGEF25Q86VW2 580 aa13.2□□□□□ -0.3
HDAC9-210ENST00000428307 IL17REQ8NFR9 667 aa13.2□□□□□ -0.3
HDAC9-210ENST00000428307 RTL1A6NKG5 1358 aa13.2□□□□□ -0.3
HDAC9-210ENST00000428307 ZBTB7BO15156 539 aaPredicted RBP13.2□□□□□ -0.3
HDAC9-210ENST00000428307 ZC3H6P61129 1189 aaKnown RBP13.2□□□□□ -0.3
HDAC9-210ENST00000428307 C8orf34Q49A92 452 aa13.2□□□□□ -0.3
HDAC9-210ENST00000428307 MARF1Q9Y4F3 1742 aaKnown RBP13.19□□□□□ -0.3
HDAC9-210ENST00000428307 C1orf115Q9H7X2 142 aa13.19□□□□□ -0.3
HDAC9-210ENST00000428307 NWD1Q149M9 1564 aa13.19□□□□□ -0.3
HDAC9-210ENST00000428307 KDM4FA0A1W2PPD8 638 aa13.18□□□□□ -0.3
HDAC9-210ENST00000428307 HAP1P54257 671 aaPredicted RBP13.18□□□□□ -0.3
HDAC9-210ENST00000428307 AXIN2Q9Y2T1 843 aa13.18□□□□□ -0.3
HDAC9-210ENST00000428307 HTATSF1O43719 755 aaKnown RBP13.18□□□□□ -0.3
HDAC9-210ENST00000428307 SLC4A2P04920 1241 aa13.18□□□□□ -0.3
HDAC9-210ENST00000428307 HDAC1Q13547 482 aaPredicted RBP13.18□□□□□ -0.3
HDAC9-210ENST00000428307 ERICH6Q7L0X2 663 aa13.18□□□□□ -0.3
HDAC9-210ENST00000428307 IPO9Q96P70 1041 aaKnown RBP13.18□□□□□ -0.3
HDAC9-210ENST00000428307 API5Q9BZZ5 524 aaKnown RBP13.18□□□□□ -0.3
HDAC9-210ENST00000428307 KIAA0232Q92628 1395 aa13.18□□□□□ -0.3
HDAC9-210ENST00000428307 CADPS2Q86UW7 1296 aa13.17□□□□□ -0.3
HDAC9-210ENST00000428307 NFAT5O94916 1531 aa13.17□□□□□ -0.3
HDAC9-210ENST00000428307 ABCC4O15439 1325 aa13.17□□□□□ -0.3
HDAC9-210ENST00000428307 CABLES1Q8TDN4 633 aa13.16□□□□□ -0.3
HDAC9-210ENST00000428307 ANKRD24Q8TF21 1146 aa13.16□□□□□ -0.3
HDAC9-210ENST00000428307 MAP3K5Q99683 1374 aa13.16□□□□□ -0.3
HDAC9-210ENST00000428307 NECTIN2Q92692 538 aa13.16□□□□□ -0.3
HDAC9-210ENST00000428307 TAF7Q15545 349 aaPredicted RBP13.15□□□□□ -0.3
HDAC9-210ENST00000428307 LGR6Q9HBX8 967 aa13.15□□□□□ -0.3
HDAC9-210ENST00000428307 MSH6P52701 1360 aa13.15□□□□□ -0.3
HDAC9-210ENST00000428307 MST1RQ04912 1400 aa13.15□□□□□ -0.3
HDAC9-210ENST00000428307 USP19O94966 1318 aa13.15□□□□□ -0.3
HDAC9-210ENST00000428307 ANP32EQ9BTT0 268 aa13.14□□□□□ -0.31
HDAC9-210ENST00000428307 NOP58Q9Y2X3 529 aaKnown RBP13.14□□□□□ -0.31
HDAC9-210ENST00000428307 G2E3Q7L622 706 aa13.14□□□□□ -0.31
HDAC9-210ENST00000428307 CHMP4BQ9H444 224 aaKnown RBP13.14□□□□□ -0.31
HDAC9-210ENST00000428307 ZBTB47Q9UFB7 747 aaPredicted RBP13.14□□□□□ -0.31
HDAC9-210ENST00000428307 USP54Q70EL1 1684 aa13.13□□□□□ -0.31
HDAC9-210ENST00000428307 ZNF530Q6P9A1 599 aaPredicted RBP13.13□□□□□ -0.31
HDAC9-210ENST00000428307 MPRIPQ6WCQ1 1025 aa13.13□□□□□ -0.31
HDAC9-210ENST00000428307 SMC5Q8IY18 1101 aa13.13□□□□□ -0.31
HDAC9-210ENST00000428307 LTN1O94822 1766 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 NPHP3Q7Z494 1330 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 F6X3S4 739 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 PLEKHO1Q53GL0 409 aaPredicted RBP13.12□□□□□ -0.31
HDAC9-210ENST00000428307 SLC4A10Q6U841 1118 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 SIRT2Q8IXJ6 389 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 STK31Q9BXU1 1019 aa13.12□□□□□ -0.31
HDAC9-210ENST00000428307 ZNF335Q9H4Z2 1342 aaPredicted RBP13.11□□□□□ -0.31
HDAC9-210ENST00000428307 SEC24BO95487 1268 aa13.11□□□□□ -0.31
HDAC9-210ENST00000428307 INTS3Q68E01 1043 aaKnown RBP13.11□□□□□ -0.31
HDAC9-210ENST00000428307 PTPRCP08575 1304 aa13.11□□□□□ -0.31
HDAC9-210ENST00000428307 CHRNA2Q15822 529 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 LNPKQ9C0E8 428 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 NLRP2Q9NX02 1062 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 STRCP1A6NGW2 1772 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 TEFQ10587 303 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 CCDC30Q5VVM6 783 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 BCL11AQ9H165 835 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 NCOA3Q9Y6Q9 1424 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 SLIT3O75094 1523 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 ERBB3P21860 1342 aa13.1□□□□□ -0.31
HDAC9-210ENST00000428307 DCCP43146 1447 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 AMOTQ4VCS5 1084 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 AKAP4Q5JQC9 854 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 C1orf141Q5JVX7 400 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 ANKRD45Q5TZF3 282 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 BRINP3Q76B58 766 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 RGS12O14924 1447 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 KCNQ3O43525 872 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 NUCB1Q02818 461 aa13.09□□□□□ -0.31
HDAC9-210ENST00000428307 EIF2S2P20042 333 aaKnown RBP13.08□□□□□ -0.32
HDAC9-210ENST00000428307 MEIS3Q99687 375 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 CEMIPQ8WUJ3 1361 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 CSB-PGBD3P0DP91 1061 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 FKBP5Q13451 457 aaPredicted RBP13.08□□□□□ -0.32
HDAC9-210ENST00000428307 CHD1LQ86WJ1 897 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 BABAM1Q9NWV8 329 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 LMTK3Q96Q04 1460 aa13.08□□□□□ -0.32
HDAC9-210ENST00000428307 BTBD11A6QL63 1104 aa13.07□□□□□ -0.32
HDAC9-210ENST00000428307 FLIIQ13045 1269 aa13.07□□□□□ -0.32
HDAC9-210ENST00000428307 HDGFL1Q5TGJ6 251 aa13.07□□□□□ -0.32
HDAC9-210ENST00000428307 SLAIN2Q9P270 581 aa13.07□□□□□ -0.32
HDAC9-210ENST00000428307 TRPM3Q9HCF6 1732 aaPredicted RBP13.07□□□□□ -0.32
HDAC9-210ENST00000428307 SPATA31A3Q5VYP0 1347 aa13.07□□□□□ -0.32
HDAC9-210ENST00000428307 KIF1AQ12756 1690 aa13.06□□□□□ -0.32
HDAC9-210ENST00000428307 RNMTO43148 476 aaKnown RBP13.06□□□□□ -0.32
HDAC9-210ENST00000428307 EIF4A1P60842 406 aaKnown RBP13.06□□□□□ -0.32
HDAC9-210ENST00000428307 RAPGEF4Q8WZA2 1011 aa13.06□□□□□ -0.32
HDAC9-210ENST00000428307 GCC1Q96CN9 775 aa13.06□□□□□ -0.32
HDAC9-210ENST00000428307 MED1Q15648 1581 aaPredicted RBP13.06□□□□□ -0.32
HDAC9-210ENST00000428307 SLC4A3P48751 1232 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms