RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 GTF2IP78347 998 aa7.91□□□□□ -1.14
USP40-204ENST00000427947 TRIM50Q86XT4 487 aa7.91□□□□□ -1.14
USP40-204ENST00000427947 KLF16Q9BXK1 252 aaPredicted RBP7.91□□□□□ -1.14
USP40-204ENST00000427947 ZFAND3Q9H8U3 227 aa7.91□□□□□ -1.14
USP40-204ENST00000427947 GFRA3O60609 400 aa7.9□□□□□ -1.14
USP40-204ENST00000427947 ATP1A2P50993 1020 aa7.9□□□□□ -1.14
USP40-204ENST00000427947 PSME1Q06323 249 aa7.9□□□□□ -1.14
USP40-204ENST00000427947 CRTC2Q53ET0 693 aaPredicted RBP7.9□□□□□ -1.14
USP40-204ENST00000427947 LARP1Q6PKG0 1096 aaKnown RBP7.9□□□□□ -1.14
USP40-204ENST00000427947 OGFOD1Q8N543 542 aa7.9□□□□□ -1.14
USP40-204ENST00000427947 OSBPL3Q9H4L5 887 aa7.9□□□□□ -1.14
USP40-204ENST00000427947 FAM196BA6NMK8 535 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L15C9J2P7 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L10C9JJH3 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L13C9JLJ4 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L12C9JPN9 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L11C9JVI0 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L21D6R901 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L18D6R9N7 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L22D6RA61 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L17D6RBQ6 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L19D6RCP7 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L20D6RJB6 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 ADD1P35611 737 aaKnown RBP7.89□□□□□ -1.15
USP40-204ENST00000427947 CLDN10P78369 228 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 USP17L24Q0WX57 530 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 CBLBQ13191 982 aa7.89□□□□□ -1.15
USP40-204ENST00000427947 ZNF594Q96JF6 807 aaPredicted RBP7.89□□□□□ -1.15
USP40-204ENST00000427947 ACIN1Q9UKV3 1341 aaKnown RBP7.88□□□□□ -1.15
USP40-204ENST00000427947 NRG2O14511 850 aaPredicted RBP7.88□□□□□ -1.15
USP40-204ENST00000427947 ATG7O95352 703 aa7.88□□□□□ -1.15
USP40-204ENST00000427947 PKDCCQ504Y2 493 aa7.88□□□□□ -1.15
USP40-204ENST00000427947 CYP2U1Q7Z449 544 aa7.88□□□□□ -1.15
USP40-204ENST00000427947 DNAAF2Q9NVR5 837 aaKnown RBP7.88□□□□□ -1.15
USP40-204ENST00000427947 KIAA1024Q9UPX6 916 aa7.88□□□□□ -1.15
USP40-204ENST00000427947 PCDHGA11Q9Y5H2 935 aa7.88□□□□□ -1.15
USP40-204ENST00000427947 ADH1AP07327 375 aa7.87□□□□□ -1.15
USP40-204ENST00000427947 PTK7Q13308 1070 aa7.87□□□□□ -1.15
USP40-204ENST00000427947 CAPN5O15484 640 aaPredicted RBP7.86□□□□□ -1.15
USP40-204ENST00000427947 CCDC102BQ68D86 513 aa7.86□□□□□ -1.15
USP40-204ENST00000427947 Q6ZVU0 165 aa7.86□□□□□ -1.15
USP40-204ENST00000427947 LARGE2Q8N3Y3 721 aa7.86□□□□□ -1.15
USP40-204ENST00000427947 TPCN2Q8NHX9 752 aa7.86□□□□□ -1.15
USP40-204ENST00000427947 NOVA2Q9UNW9 492 aaKnown RBP7.86□□□□□ -1.15
USP40-204ENST00000427947 STAU1O95793 577 aaKnown RBP7.85□□□□□ -1.15
USP40-204ENST00000427947 DPYDQ12882 1025 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 LAPTM4AQ15012 233 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 MEIOBQ8N635 442 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 RETREG2Q8NC44 543 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 AGBL1Q96MI9 1066 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 ARXQ96QS3 562 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 RAB6BQ9NRW1 208 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 ZMIZ1Q9ULJ6 1067 aa7.85□□□□□ -1.15
USP40-204ENST00000427947 RBM19Q9Y4C8 960 aaKnown RBP7.85□□□□□ -1.15
USP40-204ENST00000427947 ZBTB7BO15156 539 aaPredicted RBP7.84□□□□□ -1.15
USP40-204ENST00000427947 DGAT1O75907 488 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 AVPP01185 164 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 CSB-PGBD3P0DP91 1061 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 RELBQ01201 579 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 ELOAQ14241 798 aaKnown RBP7.84□□□□□ -1.15
USP40-204ENST00000427947 ANKMY2Q8IV38 441 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 HOMEZQ8IX15 550 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 SIX5Q8N196 739 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 STK32AQ8WU08 396 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 IRX2Q9BZI1 471 aaPredicted RBP7.84□□□□□ -1.15
USP40-204ENST00000427947 ARHGEF10LQ9HCE6 1279 aa7.84□□□□□ -1.15
USP40-204ENST00000427947 GNRH1P01148 92 aa7.83□□□□□ -1.16
USP40-204ENST00000427947 GDF10P55107 478 aa7.83□□□□□ -1.16
USP40-204ENST00000427947 SCNN1DP51172 638 aa7.82□□□□□ -1.16
USP40-204ENST00000427947 KDF1Q8NAX2 398 aaPredicted RBP7.82□□□□□ -1.16
USP40-204ENST00000427947 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.82□□□□□ -1.16
USP40-204ENST00000427947 FAM200AQ8TCP9 573 aa7.82□□□□□ -1.16
USP40-204ENST00000427947 ETNK1Q9HBU6 452 aa7.82□□□□□ -1.16
USP40-204ENST00000427947 SFI1A8K8P3 1242 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 TMEM229AB2RXF0 380 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 AXIN1O15169 862 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 DKK1O94907 266 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 UPP2O95045 317 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 PTGIRP43119 386 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 SEC13P55735 322 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 CTC1Q2NKJ3 1217 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 TMEM164Q5U3C3 297 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 LINC00528Q8N1L1 170 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 TSEN34Q9BSV6 310 aaKnown RBP7.81□□□□□ -1.16
USP40-204ENST00000427947 ZNF395Q9H8N7 513 aaPredicted RBP7.81□□□□□ -1.16
USP40-204ENST00000427947 ZNF358Q9NW07 568 aa7.81□□□□□ -1.16
USP40-204ENST00000427947 A0A1W2PRU2 124 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 MEN1O00255 615 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 INHAP05111 366 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 BMP1P13497 986 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 ESCO1Q5FWF5 840 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 SERTAD1Q9UHV2 236 aa7.8□□□□□ -1.16
USP40-204ENST00000427947 CARNS1A5YM72 827 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 WASLO00401 505 aaPredicted RBP7.79□□□□□ -1.16
USP40-204ENST00000427947 ST8SIA5O15466 376 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 IL2RAP01589 272 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 SMCPP49901 116 aaPredicted RBP7.79□□□□□ -1.16
USP40-204ENST00000427947 CLN3Q13286 438 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 C6orf118Q5T5N4 469 aa7.79□□□□□ -1.16
USP40-204ENST00000427947 MRPL14Q6P1L8 145 aaKnown RBP7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms