RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 BLOC1S2Q6QNY1 142 aa16.87■□□□□ 0.29
PTPN13-203ENST00000427191 TSG101Q99816 390 aa16.87■□□□□ 0.29
PTPN13-203ENST00000427191 FAM193AP78312 1265 aa16.87■□□□□ 0.29
PTPN13-203ENST00000427191 C6orf163Q5TEZ5 329 aa16.87■□□□□ 0.29
PTPN13-203ENST00000427191 CCDC150Q8NCX0 1101 aa16.87■□□□□ 0.29
PTPN13-203ENST00000427191 SF3B2Q13435 895 aaKnown RBP16.86■□□□□ 0.29
PTPN13-203ENST00000427191 PTPN14Q15678 1187 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 HOOK3Q86VS8 718 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 BBXQ8WY36 941 aaPredicted RBP16.86■□□□□ 0.29
PTPN13-203ENST00000427191 PYM1Q9BRP8 204 aaKnown RBP16.86■□□□□ 0.29
PTPN13-203ENST00000427191 RAB34Q9BZG1 259 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 CASQ1P31415 396 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 CNNM1Q9NRU3 951 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 MCM5P33992 734 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 SEPT11Q9NVA2 429 aaKnown RBP16.86■□□□□ 0.29
PTPN13-203ENST00000427191 UBAC1Q9BSL1 405 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 SAMD1Q6SPF0 538 aaPredicted RBP16.86■□□□□ 0.29
PTPN13-203ENST00000427191 MROH2BQ7Z745 1585 aa16.86■□□□□ 0.29
PTPN13-203ENST00000427191 GSDMDP57764 484 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 CCDC175P0C221 793 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 CCDC196A0A1B0GTZ2 297 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 USO1O60763 962 aaKnown RBP16.85■□□□□ 0.29
PTPN13-203ENST00000427191 ATP2B1P20020 1258 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 GRIPAP1Q4V328 841 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 SCAND2PQ9GZW5 306 aaPredicted RBP16.85■□□□□ 0.29
PTPN13-203ENST00000427191 EHBP1Q8NDI1 1231 aa16.85■□□□□ 0.29
PTPN13-203ENST00000427191 AIMP1Q12904 312 aaKnown RBP16.84■□□□□ 0.29
PTPN13-203ENST00000427191 PPP4R3AQ6IN85 833 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 IFFO1Q0D2I5 559 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 WDR63Q8IWG1 891 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 ANO10Q9NW15 660 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 SREK1Q8WXA9 508 aaKnown RBP16.84■□□□□ 0.29
PTPN13-203ENST00000427191 ALS2CR12Q96Q35 445 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 FERMT1Q9BQL6 677 aa16.84■□□□□ 0.29
PTPN13-203ENST00000427191 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.83■□□□□ 0.29
PTPN13-203ENST00000427191 V9GYY5 206 aaPredicted RBP16.83■□□□□ 0.29
PTPN13-203ENST00000427191 FGD6Q6ZV73 1430 aa16.83■□□□□ 0.28
PTPN13-203ENST00000427191 CFAP100Q494V2 611 aa16.83■□□□□ 0.28
PTPN13-203ENST00000427191 ZHX3Q9H4I2 956 aa16.83■□□□□ 0.28
PTPN13-203ENST00000427191 PAFAH1B1P43034 410 aa16.83■□□□□ 0.28
PTPN13-203ENST00000427191 CEBPZQ03701 1054 aaKnown RBP16.82■□□□□ 0.28
PTPN13-203ENST00000427191 CCDC183Q5T5S1 534 aa16.82■□□□□ 0.28
PTPN13-203ENST00000427191 PDRG1Q9NUG6 133 aa16.82■□□□□ 0.28
PTPN13-203ENST00000427191 CCDC97Q96F63 343 aaPredicted RBP16.82■□□□□ 0.28
PTPN13-203ENST00000427191 HFM1A2PYH4 1435 aa16.82■□□□□ 0.28
PTPN13-203ENST00000427191 PTPRGP23470 1445 aa16.82■□□□□ 0.28
PTPN13-203ENST00000427191 RBM10P98175 930 aaKnown RBP16.82■□□□□ 0.28
PTPN13-203ENST00000427191 TWISTNBQ3B726 338 aaPredicted RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 SH2B1Q9NRF2 756 aaPredicted RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 HMGB1P09429 215 aaKnown RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 SEC63Q9UGP8 760 aaKnown RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 CETN1Q12798 172 aa16.81■□□□□ 0.28
PTPN13-203ENST00000427191 U3KPZ7 1027 aaPredicted RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 SUPT6HQ7KZ85 1726 aaKnown RBP16.81■□□□□ 0.28
PTPN13-203ENST00000427191 TUBB4BP68371 445 aa16.81■□□□□ 0.28
PTPN13-203ENST00000427191 PDZRN3Q9UPQ7 1066 aa16.8■□□□□ 0.28
PTPN13-203ENST00000427191 GSTTP1A0A1W2PQM5 241 aa16.8■□□□□ 0.28
PTPN13-203ENST00000427191 FAM177A1Q8N128 213 aaPredicted RBP16.8■□□□□ 0.28
PTPN13-203ENST00000427191 NLRP2Q9NX02 1062 aa16.8■□□□□ 0.28
PTPN13-203ENST00000427191 MATR3P43243 847 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTPN13-203ENST00000427191 HMOX1P09601 288 aa16.8■□□□□ 0.28
PTPN13-203ENST00000427191 SMARCA4P51532 1647 aa16.79■□□□□ 0.28
PTPN13-203ENST00000427191 FERP16591 822 aa16.79■□□□□ 0.28
PTPN13-203ENST00000427191 MPHOSPH10O00566 681 aaKnown RBP16.79■□□□□ 0.28
PTPN13-203ENST00000427191 ZNF76P36508 570 aa16.79■□□□□ 0.28
PTPN13-203ENST00000427191 CADPSQ9ULU8 1353 aa16.78■□□□□ 0.28
PTPN13-203ENST00000427191 IFI16Q16666 785 aaKnown RBP16.78■□□□□ 0.28
PTPN13-203ENST00000427191 FAM114A1Q8IWE2 563 aa16.78■□□□□ 0.28
PTPN13-203ENST00000427191 MPHOSPH8Q99549 860 aa16.78■□□□□ 0.28
PTPN13-203ENST00000427191 EHMT1Q9H9B1 1298 aa16.78■□□□□ 0.28
PTPN13-203ENST00000427191 DAPK1P53355 1430 aa16.78■□□□□ 0.28
PTPN13-203ENST00000427191 PLVAPQ9BX97 442 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 MTMR7Q9Y216 660 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 YEATS4O95619 227 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 CACNA2D4Q7Z3S7 1137 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 CHD1LQ86WJ1 897 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 DHX29Q7Z478 1369 aaKnown RBP16.77■□□□□ 0.28
PTPN13-203ENST00000427191 SSR1P43307 286 aaKnown RBP16.77■□□□□ 0.28
PTPN13-203ENST00000427191 KAT6BQ8WYB5 2073 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 ERICH4A6NGS2 130 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 RAB11FIP3O75154 756 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 TDO2P48775 406 aa16.77■□□□□ 0.28
PTPN13-203ENST00000427191 MCM4P33991 863 aa16.77■□□□□ 0.27
PTPN13-203ENST00000427191 BACH2Q9BYV9 841 aa16.77■□□□□ 0.27
PTPN13-203ENST00000427191 FSD2A1L4K1 749 aa16.77■□□□□ 0.27
PTPN13-203ENST00000427191 MVPQ14764 893 aaKnown RBP16.77■□□□□ 0.27
PTPN13-203ENST00000427191 ARHGAP5Q13017 1502 aa16.77■□□□□ 0.27
PTPN13-203ENST00000427191 TOP1P11387 765 aaKnown RBP16.76■□□□□ 0.27
PTPN13-203ENST00000427191 TCP11L2Q8N4U5 519 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 TMEM266Q2M3C6 531 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 LRRC45Q96CN5 670 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 PODXL2Q9NZ53 605 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 ANKRD50Q9ULJ7 1429 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 IVLP07476 585 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 CCDC172P0C7W6 258 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 ERICH3Q5RHP9 1530 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 GOLIM4O00461 696 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 HDGFL1Q5TGJ6 251 aa16.76■□□□□ 0.27
PTPN13-203ENST00000427191 TUBB4AP04350 444 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 ATF7IPQ6VMQ6 1270 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms