RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 QTRT2Q9H974 415 aaKnown RBP13.28□□□□□ -0.28
CD44-207ENST00000425428 SPATA31A1Q5TZJ5 1347 aa13.28□□□□□ -0.28
CD44-207ENST00000425428 SPATA31A5Q5VU36 1347 aa13.28□□□□□ -0.28
CD44-207ENST00000425428 SPATA31A7Q8IWB4 1347 aa13.28□□□□□ -0.28
CD44-207ENST00000425428 AEBP1Q8IUX7 1158 aa13.27□□□□□ -0.28
CD44-207ENST00000425428 EXOC5O00471 708 aa13.27□□□□□ -0.29
CD44-207ENST00000425428 YTHDC1Q96MU7 727 aaKnown RBP13.27□□□□□ -0.29
CD44-207ENST00000425428 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.27□□□□□ -0.29
CD44-207ENST00000425428 BCL9LQ86UU0 1499 aa13.26□□□□□ -0.29
CD44-207ENST00000425428 BARGINQ6ZT62 677 aa13.26□□□□□ -0.29
CD44-207ENST00000425428 GJD4Q96KN9 370 aaPredicted RBP13.26□□□□□ -0.29
CD44-207ENST00000425428 APAF1O14727 1248 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
CD44-207ENST00000425428 CALD1Q05682 793 aaKnown RBP13.25□□□□□ -0.29
CD44-207ENST00000425428 NEUROD2Q15784 382 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 NFE2L2Q16236 605 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 ZCRB1Q8TBF4 217 aaKnown RBP13.25□□□□□ -0.29
CD44-207ENST00000425428 NCAPD2Q15021 1401 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 RIPK4P57078 832 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 PLEKHF1Q96S99 279 aa13.25□□□□□ -0.29
CD44-207ENST00000425428 PCDH11XQ9BZA7 1347 aa13.24□□□□□ -0.29
CD44-207ENST00000425428 PCDH11YQ9BZA8 1340 aa13.24□□□□□ -0.29
CD44-207ENST00000425428 DDB1Q16531 1140 aa13.24□□□□□ -0.29
CD44-207ENST00000425428 ZNF530Q6P9A1 599 aaPredicted RBP13.24□□□□□ -0.29
CD44-207ENST00000425428 KAT6BQ8WYB5 2073 aa13.24□□□□□ -0.29
CD44-207ENST00000425428 GNAT3A8MTJ3 354 aa13.23□□□□□ -0.29
CD44-207ENST00000425428 TMPOP42166 694 aaKnown RBP13.23□□□□□ -0.29
CD44-207ENST00000425428 RBM6P78332 1123 aaKnown RBP13.23□□□□□ -0.29
CD44-207ENST00000425428 PDE3BQ13370 1112 aa13.23□□□□□ -0.29
CD44-207ENST00000425428 FAM98CQ17RN3 349 aaKnown RBP13.23□□□□□ -0.29
CD44-207ENST00000425428 IFNL2Q8IZJ0 200 aa13.23□□□□□ -0.29
CD44-207ENST00000425428 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
CD44-207ENST00000425428 WNK3Q9BYP7 1800 aa13.23□□□□□ -0.29
CD44-207ENST00000425428 ATRNO75882 1429 aa13.23□□□□□ -0.29
CD44-207ENST00000425428 HTATSF1O43719 755 aaKnown RBP13.22□□□□□ -0.29
CD44-207ENST00000425428 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
CD44-207ENST00000425428 AKAP4Q5JQC9 854 aa13.22□□□□□ -0.29
CD44-207ENST00000425428 RXRBP28702 533 aa13.22□□□□□ -0.29
CD44-207ENST00000425428 PHACTR3Q96KR7 559 aa13.22□□□□□ -0.29
CD44-207ENST00000425428 OVOS2A0A0G2JMS6 1433 aa13.21□□□□□ -0.29
CD44-207ENST00000425428 DLG5Q8TDM6 1919 aa13.21□□□□□ -0.29
CD44-207ENST00000425428 MTHFSDQ2M296 383 aaKnown RBP13.21□□□□□ -0.29
CD44-207ENST00000425428 DDX54Q8TDD1 881 aaKnown RBP13.21□□□□□ -0.29
CD44-207ENST00000425428 RRP7AQ9Y3A4 280 aaKnown RBP13.2□□□□□ -0.3
CD44-207ENST00000425428 MAP3K5Q99683 1374 aa13.2□□□□□ -0.3
CD44-207ENST00000425428 MEGF6O75095 1541 aa13.2□□□□□ -0.3
CD44-207ENST00000425428 CCDC27Q2M243 656 aa13.2□□□□□ -0.3
CD44-207ENST00000425428 PKD1L3Q7Z443 1732 aa13.19□□□□□ -0.3
CD44-207ENST00000425428 ZBED9Q6R2W3 1325 aa13.18□□□□□ -0.3
CD44-207ENST00000425428 TEFQ10587 303 aa13.18□□□□□ -0.3
CD44-207ENST00000425428 TNS2Q63HR2 1409 aa13.18□□□□□ -0.3
CD44-207ENST00000425428 DCAF5Q96JK2 942 aa13.17□□□□□ -0.3
CD44-207ENST00000425428 PHKG2P15735 406 aa13.17□□□□□ -0.3
CD44-207ENST00000425428 WDR63Q8IWG1 891 aa13.17□□□□□ -0.3
CD44-207ENST00000425428 SEPT12Q8IYM1 358 aa13.17□□□□□ -0.3
CD44-207ENST00000425428 VIRMAQ69YN4 1812 aaKnown RBP13.16□□□□□ -0.3
CD44-207ENST00000425428 DISP2A7MBM2 1401 aa13.16□□□□□ -0.3
CD44-207ENST00000425428 GOLGA2Q08379 1002 aa13.16□□□□□ -0.3
CD44-207ENST00000425428 WWC1Q8IX03 1113 aa13.16□□□□□ -0.3
CD44-207ENST00000425428 GLI3P10071 1580 aa13.16□□□□□ -0.3
CD44-207ENST00000425428 MYH16Q9H6N6 1097 aa13.15□□□□□ -0.3
CD44-207ENST00000425428 SENP3-EIF4A1A0A087X0R7 540 aa13.15□□□□□ -0.31
CD44-207ENST00000425428 ONECUT3O60422 494 aaPredicted RBP13.15□□□□□ -0.31
CD44-207ENST00000425428 CABP4P57796 275 aa13.15□□□□□ -0.31
CD44-207ENST00000425428 GNAI1P63096 354 aa13.15□□□□□ -0.31
CD44-207ENST00000425428 MPRIPQ6WCQ1 1025 aa13.15□□□□□ -0.31
CD44-207ENST00000425428 LAS1LQ9Y4W2 734 aaKnown RBP13.15□□□□□ -0.31
CD44-207ENST00000425428 LRRC37A3O60309 1634 aa13.14□□□□□ -0.31
CD44-207ENST00000425428 IL16Q14005 1332 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 SCN11AQ9UI33 1791 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 ERVV-2B6SEH9 535 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 CYP27B1O15528 508 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 RNMTO43148 476 aaKnown RBP13.13□□□□□ -0.31
CD44-207ENST00000425428 CENPBP07199 599 aaPredicted RBP13.13□□□□□ -0.31
CD44-207ENST00000425428 MCM10Q7L590 875 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 KRT27Q7Z3Y8 459 aa13.13□□□□□ -0.31
CD44-207ENST00000425428 E9PSI1 815 aa13.12□□□□□ -0.31
CD44-207ENST00000425428 TRIM35Q9UPQ4 493 aa13.12□□□□□ -0.31
CD44-207ENST00000425428 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
CD44-207ENST00000425428 NKX1-1Q15270 411 aaPredicted RBP13.12□□□□□ -0.31
CD44-207ENST00000425428 TAF7Q15545 349 aaPredicted RBP13.12□□□□□ -0.31
CD44-207ENST00000425428 SYTL4Q96C24 671 aaPredicted RBP13.12□□□□□ -0.31
CD44-207ENST00000425428 BABAM1Q9NWV8 329 aa13.12□□□□□ -0.31
CD44-207ENST00000425428 TMOD3Q9NYL9 352 aa13.12□□□□□ -0.31
CD44-207ENST00000425428 DCTN1Q14203 1278 aa13.11□□□□□ -0.31
CD44-207ENST00000425428 TTC5Q8N0Z6 440 aa13.11□□□□□ -0.31
CD44-207ENST00000425428 IFT57Q9NWB7 429 aa13.11□□□□□ -0.31
CD44-207ENST00000425428 SHANK3Q9BYB0 1731 aa13.1□□□□□ -0.31
CD44-207ENST00000425428 BTBD11A6QL63 1104 aa13.1□□□□□ -0.31
CD44-207ENST00000425428 FAM196AQ6ZSG2 479 aa13.1□□□□□ -0.31
CD44-207ENST00000425428 CHMP4AQ9BY43 222 aa13.1□□□□□ -0.31
CD44-207ENST00000425428 POTEAQ6S8J7 498 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 IL17REQ8NFR9 667 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 CFAP44Q96MT7 982 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 SLC52A2Q9HAB3 445 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 TSPYL4Q9UJ04 414 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 MARCH10Q8NA82 808 aaPredicted RBP13.09□□□□□ -0.31
CD44-207ENST00000425428 LGR6Q9HBX8 967 aa13.09□□□□□ -0.31
CD44-207ENST00000425428 BRWD3Q6RI45 1802 aa13.08□□□□□ -0.32
CD44-207ENST00000425428 NFATC2IPQ8NCF5 419 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms