RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 NOB1Q9ULX3 412 aaKnown RBP34■■■■□ 3.03
LDB1-202ENST00000425280 SPATA31A3Q5VYP0 1347 aa34■■■■□ 3.03
LDB1-202ENST00000425280 KIF16BQ96L93 1317 aa34■■■■□ 3.03
LDB1-202ENST00000425280 TWISTNBQ3B726 338 aaPredicted RBP34■■■■□ 3.03
LDB1-202ENST00000425280 LRRC59Q96AG4 307 aaKnown RBP34■■■■□ 3.03
LDB1-202ENST00000425280 BRPF1P55201 1214 aaPredicted RBP33.99■■■■□ 3.03
LDB1-202ENST00000425280 DZIP1LQ8IYY4 767 aaKnown RBP33.99■■■■□ 3.03
LDB1-202ENST00000425280 SLAIN2Q9P270 581 aa33.99■■■■□ 3.03
LDB1-202ENST00000425280 MS4A1P11836 297 aa33.99■■■■□ 3.03
LDB1-202ENST00000425280 TRIM27P14373 513 aa33.99■■■■□ 3.03
LDB1-202ENST00000425280 AXIN2Q9Y2T1 843 aa33.99■■■■□ 3.03
LDB1-202ENST00000425280 ELL2O00472 640 aaPredicted RBP33.98■■■■□ 3.03
LDB1-202ENST00000425280 ZC3H6P61129 1189 aaKnown RBP33.98■■■■□ 3.03
LDB1-202ENST00000425280 ANKRD24Q8TF21 1146 aa33.98■■■■□ 3.03
LDB1-202ENST00000425280 ATF7IPQ6VMQ6 1270 aa33.97■■■■□ 3.03
LDB1-202ENST00000425280 GNAT3A8MTJ3 354 aa33.97■■■■□ 3.03
LDB1-202ENST00000425280 NCAPD2Q15021 1401 aa33.97■■■■□ 3.03
LDB1-202ENST00000425280 LRRC37A3O60309 1634 aa33.96■■■■□ 3.03
LDB1-202ENST00000425280 FTSJ3Q8IY81 847 aaKnown RBP33.96■■■■□ 3.03
LDB1-202ENST00000425280 CENPQQ7L2Z9 268 aaPredicted RBP33.95■■■■□ 3.03
LDB1-202ENST00000425280 RGPD5Q99666 1765 aa33.95■■■■□ 3.03
LDB1-202ENST00000425280 MAP3K5Q99683 1374 aa33.95■■■■□ 3.03
LDB1-202ENST00000425280 CRYBG1Q9Y4K1 1723 aa33.94■■■■□ 3.02
LDB1-202ENST00000425280 MRPL50Q8N5N7 158 aaKnown RBP33.94■■■■□ 3.02
LDB1-202ENST00000425280 CAMTA1Q9Y6Y1 1673 aa33.94■■■■□ 3.02
LDB1-202ENST00000425280 IPO8O15397 1037 aaKnown RBP33.94■■■■□ 3.02
LDB1-202ENST00000425280 AAMPQ13685 434 aa33.94■■■■□ 3.02
LDB1-202ENST00000425280 MVPQ14764 893 aaKnown RBP33.94■■■■□ 3.02
LDB1-202ENST00000425280 CABLES1Q8TDN4 633 aa33.92■■■■□ 3.02
LDB1-202ENST00000425280 KIAA0232Q92628 1395 aa33.92■■■■□ 3.02
LDB1-202ENST00000425280 MIS18AQ9NYP9 233 aa33.89■■■■□ 3.02
LDB1-202ENST00000425280 COL18A1P39060 1754 aa33.89■■■■□ 3.02
LDB1-202ENST00000425280 KRT24Q2M2I5 525 aa33.89■■■■□ 3.02
LDB1-202ENST00000425280 IL17REQ8NFR9 667 aa33.88■■■■□ 3.01
LDB1-202ENST00000425280 ERBB3P21860 1342 aa33.88■■■■□ 3.01
LDB1-202ENST00000425280 SOS2Q07890 1332 aaPredicted RBP33.88■■■■□ 3.01
LDB1-202ENST00000425280 RBM19Q9Y4C8 960 aaKnown RBP33.88■■■■□ 3.01
LDB1-202ENST00000425280 TSPYL4Q9UJ04 414 aa33.87■■■■□ 3.01
LDB1-202ENST00000425280 TCERG1O14776 1098 aaKnown RBP33.86■■■■□ 3.01
LDB1-202ENST00000425280 LMO7Q8WWI1 1683 aa33.85■■■■□ 3.01
LDB1-202ENST00000425280 ARHGAP45Q92619 1136 aa33.84■■■■□ 3.01
LDB1-202ENST00000425280 IGHDP01880 384 aa33.83■■■■□ 3.01
LDB1-202ENST00000425280 HAP1P54257 671 aaPredicted RBP33.83■■■■□ 3.01
LDB1-202ENST00000425280 TMEM57Q8N5G2 664 aa33.83■■■■□ 3.01
LDB1-202ENST00000425280 ABCC6O95255 1503 aa33.83■■■■□ 3.01
LDB1-202ENST00000425280 PLEKHO1Q53GL0 409 aaPredicted RBP33.82■■■■□ 3
LDB1-202ENST00000425280 ITPRIPQ8IWB1 547 aa33.82■■■■□ 3
LDB1-202ENST00000425280 DDX19BQ9UMR2 479 aa33.81■■■■□ 3
LDB1-202ENST00000425280 CPDO75976 1380 aa33.81■■■■□ 3
LDB1-202ENST00000425280 PCDHB15Q9Y5E8 787 aa33.81■■■■□ 3
LDB1-202ENST00000425280 AMOTQ4VCS5 1084 aa33.8■■■■□ 3
LDB1-202ENST00000425280 CEMIPQ8WUJ3 1361 aa33.79■■■■□ 3
LDB1-202ENST00000425280 SKAP1Q86WV1 359 aa33.79■■■■□ 3
LDB1-202ENST00000425280 ZNF530Q6P9A1 599 aaPredicted RBP33.78■■■■□ 3
LDB1-202ENST00000425280 CHRNA2Q15822 529 aa33.78■■■■□ 3
LDB1-202ENST00000425280 TAF7Q15545 349 aaPredicted RBP33.77■■■■□ 3
LDB1-202ENST00000425280 BABAM1Q9NWV8 329 aa33.77■■■■□ 3
LDB1-202ENST00000425280 NHSL1Q5SYE7 1610 aa33.77■■■■□ 3
LDB1-202ENST00000425280 AKAP4Q5JQC9 854 aa33.76■■■■□ 3
LDB1-202ENST00000425280 FAM208AQ9UK61 1670 aaKnown RBP33.74■■■□□ 2.99
LDB1-202ENST00000425280 NLRP2Q9NX02 1062 aa33.74■■■□□ 2.99
LDB1-202ENST00000425280 LGR6Q9HBX8 967 aa33.73■■■□□ 2.99
LDB1-202ENST00000425280 ABCC4O15439 1325 aa33.73■■■□□ 2.99
LDB1-202ENST00000425280 API5Q9BZZ5 524 aaKnown RBP33.72■■■□□ 2.99
LDB1-202ENST00000425280 ZBTB40Q9NUA8 1239 aa33.7■■■□□ 2.98
LDB1-202ENST00000425280 CSB-PGBD3P0DP91 1061 aa33.69■■■□□ 2.98
LDB1-202ENST00000425280 C1orf141Q5JVX7 400 aa33.69■■■□□ 2.98
LDB1-202ENST00000425280 ABCA3Q99758 1704 aa33.69■■■□□ 2.98
LDB1-202ENST00000425280 MPRIPQ6WCQ1 1025 aa33.67■■■□□ 2.98
LDB1-202ENST00000425280 RAPGEF4Q8WZA2 1011 aa33.67■■■□□ 2.98
LDB1-202ENST00000425280 RWDD1Q9H446 243 aaPredicted RBP33.67■■■□□ 2.98
LDB1-202ENST00000425280 VIRMAQ69YN4 1812 aaKnown RBP33.66■■■□□ 2.98
LDB1-202ENST00000425280 RNMTO43148 476 aaKnown RBP33.65■■■□□ 2.98
LDB1-202ENST00000425280 OVOS2A0A0G2JMS6 1433 aa33.65■■■□□ 2.98
LDB1-202ENST00000425280 PRDM11Q9NQV5 511 aa33.64■■■□□ 2.98
LDB1-202ENST00000425280 SOS1Q07889 1333 aaPredicted RBP33.64■■■□□ 2.98
LDB1-202ENST00000425280 KDM3BQ7LBC6 1761 aa33.64■■■□□ 2.98
LDB1-202ENST00000425280 RGS12O14924 1447 aa33.64■■■□□ 2.98
LDB1-202ENST00000425280 SLC4A2P04920 1241 aa33.63■■■□□ 2.97
LDB1-202ENST00000425280 MEGF6O75095 1541 aa33.63■■■□□ 2.97
LDB1-202ENST00000425280 ZBTB7BO15156 539 aaPredicted RBP33.62■■■□□ 2.97
LDB1-202ENST00000425280 TATP17735 454 aaPredicted RBP33.62■■■□□ 2.97
LDB1-202ENST00000425280 PTPRCP08575 1304 aa33.62■■■□□ 2.97
LDB1-202ENST00000425280 TEFQ10587 303 aa33.62■■■□□ 2.97
LDB1-202ENST00000425280 LTBP4Q8N2S1 1624 aa33.61■■■□□ 2.97
LDB1-202ENST00000425280 ADAMTS7Q9UKP4 1686 aa33.6■■■□□ 2.97
LDB1-202ENST00000425280 CHMP4BQ9H444 224 aaKnown RBP33.59■■■□□ 2.97
LDB1-202ENST00000425280 HDAC1Q13547 482 aaPredicted RBP33.59■■■□□ 2.97
LDB1-202ENST00000425280 PLEKHG2Q9H7P9 1386 aa33.58■■■□□ 2.97
LDB1-202ENST00000425280 CCDC30Q5VVM6 783 aa33.57■■■□□ 2.97
LDB1-202ENST00000425280 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.57■■■□□ 2.97
LDB1-202ENST00000425280 EIF4A1P60842 406 aaKnown RBP33.56■■■□□ 2.96
LDB1-202ENST00000425280 INTS3Q68E01 1043 aaKnown RBP33.56■■■□□ 2.96
LDB1-202ENST00000425280 STK31Q9BXU1 1019 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 SPG7Q9UQ90 795 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 ROBO1Q9Y6N7 1651 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 BTBD11A6QL63 1104 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 RGS3P49796 1198 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 G2E3Q7L622 706 aa33.56■■■□□ 2.96
LDB1-202ENST00000425280 WDR17Q8IZU2 1322 aa33.55■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms