RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ZNF330Q9Y3S2 320 aaPredicted RBP11.85□□□□□ -0.51
LINC01040-201ENST00000425048 BRPF1P55201 1214 aaPredicted RBP11.84□□□□□ -0.51
LINC01040-201ENST00000425048 SLURP2P0DP57 97 aa11.83□□□□□ -0.52
LINC01040-201ENST00000425048 GPC1P35052 558 aa11.83□□□□□ -0.52
LINC01040-201ENST00000425048 CC2D2BQ6DHV5 1058 aa11.83□□□□□ -0.52
LINC01040-201ENST00000425048 MEN1O00255 615 aa11.82□□□□□ -0.52
LINC01040-201ENST00000425048 ERVK-9P63128 1117 aa11.82□□□□□ -0.52
LINC01040-201ENST00000425048 ZNF385CQ66K41 422 aaPredicted RBP11.82□□□□□ -0.52
LINC01040-201ENST00000425048 SVOPQ8N4V2 548 aa11.82□□□□□ -0.52
LINC01040-201ENST00000425048 A0A1W2PRU2 124 aa11.81□□□□□ -0.52
LINC01040-201ENST00000425048 SOCS7O14512 581 aa11.81□□□□□ -0.52
LINC01040-201ENST00000425048 RHOQP17081 205 aa11.81□□□□□ -0.52
LINC01040-201ENST00000425048 ESF1Q9H501 851 aaKnown RBP11.8□□□□□ -0.52
LINC01040-201ENST00000425048 APBB1O00213 710 aa11.79□□□□□ -0.52
LINC01040-201ENST00000425048 GMCL1Q96IK5 515 aa11.79□□□□□ -0.52
LINC01040-201ENST00000425048 NLRP3Q96P20 1036 aa11.79□□□□□ -0.52
LINC01040-201ENST00000425048 CUEDC1Q9NWM3 386 aaPredicted RBP11.79□□□□□ -0.52
LINC01040-201ENST00000425048 NDUFB9Q9Y6M9 179 aa11.79□□□□□ -0.52
LINC01040-201ENST00000425048 RNF225M0QZC1 329 aaPredicted RBP11.78□□□□□ -0.52
LINC01040-201ENST00000425048 WHAMMQ8TF30 809 aa11.78□□□□□ -0.52
LINC01040-201ENST00000425048 GSK3AP49840 483 aa11.77□□□□□ -0.53
LINC01040-201ENST00000425048 SLC27A3Q5K4L6 730 aa11.77□□□□□ -0.53
LINC01040-201ENST00000425048 CYP2U1Q7Z449 544 aa11.77□□□□□ -0.53
LINC01040-201ENST00000425048 MTMR14Q8NCE2 650 aa11.77□□□□□ -0.53
LINC01040-201ENST00000425048 PCDHB11Q9Y5F2 797 aa11.77□□□□□ -0.53
LINC01040-201ENST00000425048 ADAMTS2O95450 1211 aa11.76□□□□□ -0.53
LINC01040-201ENST00000425048 RASSF7Q02833 373 aa11.76□□□□□ -0.53
LINC01040-201ENST00000425048 SRSF11Q05519 484 aaKnown RBP11.76□□□□□ -0.53
LINC01040-201ENST00000425048 FOXR1Q6PIV2 292 aa11.76□□□□□ -0.53
LINC01040-201ENST00000425048 TRIM22Q8IYM9 498 aa11.76□□□□□ -0.53
LINC01040-201ENST00000425048 TMEM151AQ8N4L1 468 aa11.76□□□□□ -0.53
LINC01040-201ENST00000425048 ARHGEF15O94989 841 aa11.75□□□□□ -0.53
LINC01040-201ENST00000425048 POU4F2Q12837 409 aa11.75□□□□□ -0.53
LINC01040-201ENST00000425048 SNRKQ9NRH2 765 aa11.75□□□□□ -0.53
LINC01040-201ENST00000425048 DYRK1BQ9Y463 629 aa11.75□□□□□ -0.53
LINC01040-201ENST00000425048 GDF11O95390 407 aa11.74□□□□□ -0.53
LINC01040-201ENST00000425048 SCTRP47872 440 aa11.74□□□□□ -0.53
LINC01040-201ENST00000425048 CLN3Q13286 438 aa11.74□□□□□ -0.53
LINC01040-201ENST00000425048 RIPOR1Q6ZS17 1223 aa11.74□□□□□ -0.53
LINC01040-201ENST00000425048 GRIP2Q9C0E4 1043 aa11.74□□□□□ -0.53
LINC01040-201ENST00000425048 MARSP56192 900 aaKnown RBP11.73□□□□□ -0.53
LINC01040-201ENST00000425048 H7C1W4 665 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 TRAK2O60296 914 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 GPR37L1O60883 481 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 GAS6Q14393 721 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 DBN1Q16643 649 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 KCTD17Q8N5Z5 321 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 ZNF837Q96EG3 531 aaPredicted RBP11.72□□□□□ -0.53
LINC01040-201ENST00000425048 OSBPL3Q9H4L5 887 aa11.72□□□□□ -0.53
LINC01040-201ENST00000425048 WDR44Q5JSH3 913 aa11.71□□□□□ -0.53
LINC01040-201ENST00000425048 LYPD4Q6UWN0 246 aa11.71□□□□□ -0.53
LINC01040-201ENST00000425048 GAS2L1Q99501 681 aaPredicted RBP11.71□□□□□ -0.53
LINC01040-201ENST00000425048 CEP126Q9P2H0 1117 aa11.71□□□□□ -0.53
LINC01040-201ENST00000425048 MAP3K10Q02779 954 aa11.7□□□□□ -0.54
LINC01040-201ENST00000425048 NBPF10Q6P3W6 841 aaKnown RBP11.7□□□□□ -0.54
LINC01040-201ENST00000425048 NBPF15Q8N660 670 aa11.7□□□□□ -0.54
LINC01040-201ENST00000425048 SPATA31C2B4DYI2 1134 aa11.69□□□□□ -0.54
LINC01040-201ENST00000425048 GNRH1P01148 92 aa11.69□□□□□ -0.54
LINC01040-201ENST00000425048 ARHGEF10LQ9HCE6 1279 aa11.69□□□□□ -0.54
LINC01040-201ENST00000425048 MBIPQ9NS73 344 aa11.69□□□□□ -0.54
LINC01040-201ENST00000425048 SCARF2Q96GP6 870 aaPredicted RBP11.68□□□□□ -0.54
LINC01040-201ENST00000425048 PRM3Q9NNZ6 103 aa11.68□□□□□ -0.54
LINC01040-201ENST00000425048 ENAMQ9NRM1 1142 aa11.68□□□□□ -0.54
LINC01040-201ENST00000425048 GPR25O00155 361 aa11.67□□□□□ -0.54
LINC01040-201ENST00000425048 MYCP01106 439 aaPredicted RBP11.67□□□□□ -0.54
LINC01040-201ENST00000425048 CELA2BP08218 269 aaPredicted RBP11.67□□□□□ -0.54
LINC01040-201ENST00000425048 TIMMDC1Q9NPL8 285 aa11.67□□□□□ -0.54
LINC01040-201ENST00000425048 IRS1P35568 1242 aa11.66□□□□□ -0.54
LINC01040-201ENST00000425048 TAS1R3Q7RTX0 852 aa11.66□□□□□ -0.54
LINC01040-201ENST00000425048 CNKSR1Q969H4 720 aa11.66□□□□□ -0.54
LINC01040-201ENST00000425048 GTPBP3Q969Y2 492 aaKnown RBP11.66□□□□□ -0.54
LINC01040-201ENST00000425048 TRERF1Q96PN7 1200 aa11.66□□□□□ -0.54
LINC01040-201ENST00000425048 ESYT1Q9BSJ8 1104 aa11.66□□□□□ -0.54
LINC01040-201ENST00000425048 WASLO00401 505 aaPredicted RBP11.65□□□□□ -0.54
LINC01040-201ENST00000425048 F11P03951 625 aa11.65□□□□□ -0.54
LINC01040-201ENST00000425048 CENPCQ03188 943 aa11.65□□□□□ -0.54
LINC01040-201ENST00000425048 KANK3Q6NY19 840 aa11.64□□□□□ -0.55
LINC01040-201ENST00000425048 CCDC85AQ96PX6 553 aaPredicted RBP11.64□□□□□ -0.55
LINC01040-201ENST00000425048 CDCA7Q9BWT1 371 aaPredicted RBP11.64□□□□□ -0.55
LINC01040-201ENST00000425048 RAB6BQ9NRW1 208 aa11.64□□□□□ -0.55
LINC01040-201ENST00000425048 IGF1RP08069 1367 aa11.64□□□□□ -0.55
LINC01040-201ENST00000425048 EIF4G2P78344 907 aaKnown RBP eCLIP11.63□□□□□ -0.55
LINC01040-201ENST00000425048 TPRNQ4KMQ1 711 aa11.62□□□□□ -0.55
LINC01040-201ENST00000425048 TBC1D2BQ9UPU7 963 aa11.62□□□□□ -0.55
LINC01040-201ENST00000425048 IL2RAP01589 272 aa11.61□□□□□ -0.55
LINC01040-201ENST00000425048 XAGE2Q96GT9 111 aa11.61□□□□□ -0.55
LINC01040-201ENST00000425048 ZSCAN10Q96SZ4 725 aaPredicted RBP11.61□□□□□ -0.55
LINC01040-201ENST00000425048 NUCKS1Q9H1E3 243 aaKnown RBP11.61□□□□□ -0.55
LINC01040-201ENST00000425048 NSFL1CQ9UNZ2 370 aaKnown RBP11.61□□□□□ -0.55
LINC01040-201ENST00000425048 GTF2E1P29083 439 aaPredicted RBP11.6□□□□□ -0.55
LINC01040-201ENST00000425048 USP4Q13107 963 aa11.6□□□□□ -0.55
LINC01040-201ENST00000425048 BCRP11274 1271 aa11.59□□□□□ -0.55
LINC01040-201ENST00000425048 MX2P20592 715 aa11.59□□□□□ -0.55
LINC01040-201ENST00000425048 ESCO1Q5FWF5 840 aa11.59□□□□□ -0.55
LINC01040-201ENST00000425048 HRH3Q9Y5N1 445 aa11.59□□□□□ -0.55
LINC01040-201ENST00000425048 DNMT3AQ9Y6K1 912 aaPredicted RBP11.59□□□□□ -0.55
LINC01040-201ENST00000425048 TSGA10IPQ3SY00 556 aa11.58□□□□□ -0.56
LINC01040-201ENST00000425048 SLFNL1Q499Z3 407 aa11.58□□□□□ -0.56
LINC01040-201ENST00000425048 PHTF2Q8N3S3 785 aa11.58□□□□□ -0.56
LINC01040-201ENST00000425048 PHKA2P46019 1235 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms