RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TTC5Q8N0Z6 440 aa12.04□□□□□ -0.48
USP54-205ENST00000424265 RBM33Q96EV2 1170 aaKnown RBP12.04□□□□□ -0.48
USP54-205ENST00000424265 WDR63Q8IWG1 891 aa12.04□□□□□ -0.48
USP54-205ENST00000424265 PER1O15534 1290 aaPredicted RBP12.04□□□□□ -0.48
USP54-205ENST00000424265 XPCQ01831 940 aaPredicted RBP12.04□□□□□ -0.48
USP54-205ENST00000424265 RGS22Q8NE09 1264 aa12.04□□□□□ -0.48
USP54-205ENST00000424265 TULP4Q9NRJ4 1543 aa12.04□□□□□ -0.48
USP54-205ENST00000424265 TERF1P54274 439 aa12.04□□□□□ -0.48
USP54-205ENST00000424265 RRS1Q15050 365 aaKnown RBP12.04□□□□□ -0.48
USP54-205ENST00000424265 INSRP06213 1382 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 TCP11L2Q8N4U5 519 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 PANK2Q9BZ23 570 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 SULT6B1Q6IMI4 303 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 PLCD4Q9BRC7 762 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 HMOX1P09601 288 aa12.03□□□□□ -0.48
USP54-205ENST00000424265 ZSCAN30Q86W11 494 aa12.02□□□□□ -0.49
USP54-205ENST00000424265 OFD1O75665 1012 aa12.02□□□□□ -0.49
USP54-205ENST00000424265 ISY1Q9ULR0 285 aaKnown RBP12.02□□□□□ -0.49
USP54-205ENST00000424265 KIF24Q5T7B8 1368 aa12.02□□□□□ -0.49
USP54-205ENST00000424265 QRICH2Q9H0J4 1663 aa12.01□□□□□ -0.49
USP54-205ENST00000424265 ZC3H6P61129 1189 aaKnown RBP12.01□□□□□ -0.49
USP54-205ENST00000424265 CCDC173Q0VFZ6 552 aa12.01□□□□□ -0.49
USP54-205ENST00000424265 NFE2L2Q16236 605 aa12.01□□□□□ -0.49
USP54-205ENST00000424265 CARD14Q9BXL6 1004 aa12.01□□□□□ -0.49
USP54-205ENST00000424265 DCCP43146 1447 aa12□□□□□ -0.49
USP54-205ENST00000424265 SBNO1A3KN83 1393 aa12□□□□□ -0.49
USP54-205ENST00000424265 ZNF428Q96B54 188 aa12□□□□□ -0.49
USP54-205ENST00000424265 RRP7AQ9Y3A4 280 aaKnown RBP12□□□□□ -0.49
USP54-205ENST00000424265 AATKQ6ZMQ8 1374 aa12□□□□□ -0.49
USP54-205ENST00000424265 ADGRB1O14514 1584 aa12□□□□□ -0.49
USP54-205ENST00000424265 SMC4Q9NTJ3 1288 aa12□□□□□ -0.49
USP54-205ENST00000424265 IQGAP1P46940 1657 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 STRN4Q9NRL3 753 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 EMILIN1Q9Y6C2 1016 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 USP6P35125 1406 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 UBR1Q8IWV7 1749 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 ADAMTSL3P82987 1691 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 KDM4FA0A1W2PPD8 638 aa11.99□□□□□ -0.49
USP54-205ENST00000424265 NUTM2BA6NNL0 878 aaPredicted RBP11.98□□□□□ -0.49
USP54-205ENST00000424265 DDX11L8A8MPP1 907 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 NUTM2EB1AL46 878 aaPredicted RBP11.98□□□□□ -0.49
USP54-205ENST00000424265 FAM161AQ3B820 660 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 ZNF530Q6P9A1 599 aaPredicted RBP11.98□□□□□ -0.49
USP54-205ENST00000424265 NUTM2AQ8IVF1 878 aaPredicted RBP11.98□□□□□ -0.49
USP54-205ENST00000424265 RNF216Q9NWF9 866 aaPredicted RBP11.98□□□□□ -0.49
USP54-205ENST00000424265 CPS1P31327 1500 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 TIGD1Q96MW7 591 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 TSPYL4Q9UJ04 414 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 GCP02774 474 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 IP6K1Q92551 441 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 KIF3AQ9Y496 699 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 KIF16BQ96L93 1317 aa11.98□□□□□ -0.49
USP54-205ENST00000424265 RTL1A6NKG5 1358 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 TRIM6-TRIM34B2RNG4 842 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 HMGB1P09429 215 aaKnown RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 ORAI2Q96SN7 254 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 TRIM34Q9BYJ4 488 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 TPRNQ4KMQ1 711 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 ZNF335Q9H4Z2 1342 aaPredicted RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 MYCNP04198 464 aaPredicted RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 CHAF1AQ13111 956 aaPredicted RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 SASS6Q6UVJ0 657 aa11.97□□□□□ -0.49
USP54-205ENST00000424265 CDCA7Q9BWT1 371 aaPredicted RBP11.97□□□□□ -0.49
USP54-205ENST00000424265 HTATSF1O43719 755 aaKnown RBP11.96□□□□□ -0.49
USP54-205ENST00000424265 POLKQ9UBT6 870 aa11.96□□□□□ -0.49
USP54-205ENST00000424265 MED14O60244 1454 aa11.96□□□□□ -0.49
USP54-205ENST00000424265 CDC42BPGQ6DT37 1551 aa11.96□□□□□ -0.49
USP54-205ENST00000424265 GOLGA6L22H0YM25 854 aa11.96□□□□□ -0.49
USP54-205ENST00000424265 CHRM1P11229 460 aaPredicted RBP11.96□□□□□ -0.49
USP54-205ENST00000424265 ANKRD24Q8TF21 1146 aa11.96□□□□□ -0.49
USP54-205ENST00000424265 API5Q9BZZ5 524 aaKnown RBP11.96□□□□□ -0.49
USP54-205ENST00000424265 GNAT3A8MTJ3 354 aa11.96□□□□□ -0.5
USP54-205ENST00000424265 OS9Q13438 667 aaPredicted RBP11.96□□□□□ -0.5
USP54-205ENST00000424265 TRAK2O60296 914 aa11.95□□□□□ -0.5
USP54-205ENST00000424265 DDX58O95786 925 aaKnown RBP11.95□□□□□ -0.5
USP54-205ENST00000424265 TMPOP42166 694 aaKnown RBP11.95□□□□□ -0.5
USP54-205ENST00000424265 IL16Q14005 1332 aa11.95□□□□□ -0.5
USP54-205ENST00000424265 SPRYD3Q8NCJ5 442 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 SIGLEC1Q9BZZ2 1709 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 CLSTN1O94985 981 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 ZKSCAN2Q63HK3 967 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 EXOC6Q8TAG9 804 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 NGLY1Q96IV0 654 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 PRR36Q9H6K5 1346 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 BANK1Q8NDB2 785 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 CALCOCO1Q9P1Z2 691 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 TAOK2Q9UL54 1235 aa11.94□□□□□ -0.5
USP54-205ENST00000424265 ZBTB22O15209 634 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 CALRP27797 417 aaKnown RBP11.93□□□□□ -0.5
USP54-205ENST00000424265 TICAM2Q86XR7 235 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 SENP3-EIF4A1A0A087X0R7 540 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 HOXC9P31274 260 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 CCDC27Q2M243 656 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 PHF23Q9BUL5 403 aaPredicted RBP11.93□□□□□ -0.5
USP54-205ENST00000424265 IFT57Q9NWB7 429 aa11.93□□□□□ -0.5
USP54-205ENST00000424265 MAP3K19Q56UN5 1328 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 GOLGA6L6A8MZA4 724 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 NPHP1O15259 732 aa11.92□□□□□ -0.5
USP54-205ENST00000424265 CABP4P57796 275 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms