RNA–Protein interactions for RNA: ENST00000422379.2

HPS4-204, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 5

Gene HPS4, Length 1,942 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-204ENST00000422379 FBXO41Q8TF61 875 aa11.77□□□□□ -0.53
HPS4-204ENST00000422379 CARD10Q9BWT7 1032 aa11.77□□□□□ -0.53
HPS4-204ENST00000422379 CRB1P82279 1406 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 SLFN5Q08AF3 891 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 MCM10Q7L590 875 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 TRMT2AQ8IZ69 625 aaKnown RBP11.76□□□□□ -0.53
HPS4-204ENST00000422379 CNKSR2Q8WXI2 1034 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 C8orf37Q96NL8 207 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 USP35Q9P2H5 1018 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 EVA1CP58658 441 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 DUSP27Q5VZP5 1158 aa11.76□□□□□ -0.53
HPS4-204ENST00000422379 GOLGA2Q08379 1002 aa11.75□□□□□ -0.53
HPS4-204ENST00000422379 OVOS2A0A0G2JMS6 1433 aa11.75□□□□□ -0.53
HPS4-204ENST00000422379 FNBP4Q8N3X1 1017 aaPredicted RBP11.74□□□□□ -0.53
HPS4-204ENST00000422379 NGEFQ8N5V2 710 aa11.74□□□□□ -0.53
HPS4-204ENST00000422379 DISP2A7MBM2 1401 aa11.74□□□□□ -0.53
HPS4-204ENST00000422379 PDE3BQ13370 1112 aa11.74□□□□□ -0.53
HPS4-204ENST00000422379 WDR63Q8IWG1 891 aa11.74□□□□□ -0.53
HPS4-204ENST00000422379 IL17REQ8NFR9 667 aa11.74□□□□□ -0.53
HPS4-204ENST00000422379 NWD2Q9ULI1 1742 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 MAP3K5Q99683 1374 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 GAS2L2Q8NHY3 880 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 RAPGEF4Q8WZA2 1011 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 TSR2Q969E8 191 aaKnown RBP11.73□□□□□ -0.53
HPS4-204ENST00000422379 NGLY1Q96IV0 654 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 SPATA31A1Q5TZJ5 1347 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 EP400Q96L91 3159 aa11.73□□□□□ -0.53
HPS4-204ENST00000422379 PKD1L3Q7Z443 1732 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 LRRC37A3O60309 1634 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 CYP27B1O15528 508 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 NEFMP07197 916 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 ZNF530Q6P9A1 599 aaPredicted RBP11.72□□□□□ -0.53
HPS4-204ENST00000422379 LGR6Q9HBX8 967 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 SHANK3Q9BYB0 1731 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 TATP17735 454 aaPredicted RBP11.72□□□□□ -0.53
HPS4-204ENST00000422379 UNC5CLQ8IV45 518 aa11.72□□□□□ -0.53
HPS4-204ENST00000422379 SPATA31A5Q5VU36 1347 aa11.71□□□□□ -0.53
HPS4-204ENST00000422379 SPATA31A7Q8IWB4 1347 aa11.71□□□□□ -0.53
HPS4-204ENST00000422379 GNAT3A8MTJ3 354 aa11.71□□□□□ -0.53
HPS4-204ENST00000422379 E9PSI1 815 aa11.71□□□□□ -0.53
HPS4-204ENST00000422379 KDM6AO15550 1401 aaPredicted RBP11.71□□□□□ -0.53
HPS4-204ENST00000422379 ZNF853P0CG23 659 aa11.71□□□□□ -0.53
HPS4-204ENST00000422379 PLEKHO1Q53GL0 409 aaPredicted RBP11.71□□□□□ -0.53
HPS4-204ENST00000422379 FANCIQ9NVI1 1328 aa11.71□□□□□ -0.54
HPS4-204ENST00000422379 CEMIPQ8WUJ3 1361 aa11.71□□□□□ -0.54
HPS4-204ENST00000422379 IL2RBP14784 551 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 AMOTQ4VCS5 1084 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 MPRIPQ6WCQ1 1025 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 PARP4Q9UKK3 1724 aaKnown RBP11.7□□□□□ -0.54
HPS4-204ENST00000422379 PHKG2P15735 406 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 AKAP4Q5JQC9 854 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.7□□□□□ -0.542e-7■□□□□ 11.1
HPS4-204ENST00000422379 MIS18AQ9NYP9 233 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 ADAMTS7Q9UKP4 1686 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 AFF2P51816 1311 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 IL16Q14005 1332 aa11.7□□□□□ -0.54
HPS4-204ENST00000422379 USP21Q9UK80 565 aa11.69□□□□□ -0.54
HPS4-204ENST00000422379 WNK3Q9BYP7 1800 aa11.69□□□□□ -0.54
HPS4-204ENST00000422379 IRX6P78412 446 aaPredicted RBP11.68□□□□□ -0.54
HPS4-204ENST00000422379 LMOD3Q0VAK6 560 aa11.68□□□□□ -0.54
HPS4-204ENST00000422379 VPS72Q15906 364 aa11.68□□□□□ -0.54
HPS4-204ENST00000422379 ZCRB1Q8TBF4 217 aaKnown RBP11.68□□□□□ -0.54
HPS4-204ENST00000422379 MBIPQ9NS73 344 aa11.68□□□□□ -0.54
HPS4-204ENST00000422379 LAS1LQ9Y4W2 734 aaKnown RBP11.68□□□□□ -0.54
HPS4-204ENST00000422379 HTATSF1O43719 755 aaKnown RBP11.68□□□□□ -0.54
HPS4-204ENST00000422379 KRT24Q2M2I5 525 aa11.68□□□□□ -0.54
HPS4-204ENST00000422379 MEX3CQ5U5Q3 659 aaKnown RBP11.68□□□□□ -0.54
HPS4-204ENST00000422379 PLEKHG2Q9H7P9 1386 aa11.68□□□□□ -0.54
HPS4-204ENST00000422379 GLI3P10071 1580 aa11.67□□□□□ -0.54
HPS4-204ENST00000422379 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.67□□□□□ -0.54
HPS4-204ENST00000422379 CHL1O00533 1208 aa11.67□□□□□ -0.54
HPS4-204ENST00000422379 RNMTO43148 476 aaKnown RBP11.67□□□□□ -0.54
HPS4-204ENST00000422379 RTF1Q92541 710 aaKnown RBP11.67□□□□□ -0.54
HPS4-204ENST00000422379 CFAP44Q96MT7 982 aa11.67□□□□□ -0.54
HPS4-204ENST00000422379 IFT57Q9NWB7 429 aa11.67□□□□□ -0.54
HPS4-204ENST00000422379 SPG7Q9UQ90 795 aa11.67□□□□□ -0.54
HPS4-204ENST00000422379 EXOSC9Q06265 439 aaKnown RBP11.66□□□□□ -0.54
HPS4-204ENST00000422379 CCDC9Q9Y3X0 531 aaKnown RBP11.66□□□□□ -0.54
HPS4-204ENST00000422379 FAM98CQ17RN3 349 aaKnown RBP11.66□□□□□ -0.54
HPS4-204ENST00000422379 C1orf141Q5JVX7 400 aa11.66□□□□□ -0.54
HPS4-204ENST00000422379 TSPYL6Q8N831 410 aa11.66□□□□□ -0.54
HPS4-204ENST00000422379 DDX54Q8TDD1 881 aaKnown RBP11.66□□□□□ -0.54
HPS4-204ENST00000422379 RTN4Q9NQC3 1192 aaKnown RBP11.66□□□□□ -0.54
HPS4-204ENST00000422379 ATRNO75882 1429 aa11.66□□□□□ -0.54
HPS4-204ENST00000422379 BARGINQ6ZT62 677 aa11.65□□□□□ -0.54
HPS4-204ENST00000422379 IFNL2Q8IZJ0 200 aa11.65□□□□□ -0.54
HPS4-204ENST00000422379 MYH16Q9H6N6 1097 aa11.65□□□□□ -0.54
HPS4-204ENST00000422379 TOGARAM1Q9Y4F4 1720 aa11.65□□□□□ -0.55
HPS4-204ENST00000422379 TNS2Q63HR2 1409 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 PCDH11XQ9BZA7 1347 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 PCDH11YQ9BZA8 1340 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 KCNQ3O43525 872 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 C8orf58Q8NAV2 365 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 THRAP3Q9Y2W1 955 aaKnown RBP11.64□□□□□ -0.55
HPS4-204ENST00000422379 VIRMAQ69YN4 1812 aaKnown RBP11.64□□□□□ -0.55
HPS4-204ENST00000422379 GNAI1P63096 354 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 NKX1-1Q15270 411 aaPredicted RBP11.64□□□□□ -0.55
HPS4-204ENST00000422379 FOXD4L1Q9NU39 408 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 RCAN3Q9UKA8 241 aa11.64□□□□□ -0.55
HPS4-204ENST00000422379 SIPA1L3O60292 1781 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms