RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 SBNO2Q9Y2G9 1366 aa25.49■■□□□ 1.67
VCP-202ENST00000417448 DDX54Q8TDD1 881 aaKnown RBP25.49■■□□□ 1.67
VCP-202ENST00000417448 ANKRD36BQ8N2N9 1353 aa25.47■■□□□ 1.67
VCP-202ENST00000417448 ADCY9O60503 1353 aa25.46■■□□□ 1.67
VCP-202ENST00000417448 PRIM1P49642 420 aaKnown RBP25.46■■□□□ 1.67
VCP-202ENST00000417448 SYTL4Q96C24 671 aaPredicted RBP25.46■■□□□ 1.67
VCP-202ENST00000417448 RGPD2P0DJD1 1756 aa25.46■■□□□ 1.67
VCP-202ENST00000417448 COL23A1Q86Y22 540 aaPredicted RBP25.45■■□□□ 1.66
VCP-202ENST00000417448 HSPA6P17066 643 aa25.44■■□□□ 1.66
VCP-202ENST00000417448 MSL1Q68DK7 614 aa25.43■■□□□ 1.66
VCP-202ENST00000417448 GPBP1L1Q9HC44 474 aaPredicted RBP25.43■■□□□ 1.66
VCP-202ENST00000417448 C5P01031 1676 aa25.42■■□□□ 1.66
VCP-202ENST00000417448 CCNL1Q9UK58 526 aaPredicted RBP25.41■■□□□ 1.66
VCP-202ENST00000417448 MSH5O43196 834 aa25.4■■□□□ 1.66
VCP-202ENST00000417448 ROCK2O75116 1388 aaKnown RBP25.4■■□□□ 1.66
VCP-202ENST00000417448 ZNF526Q8TF50 670 aaPredicted RBP25.39■■□□□ 1.66
VCP-202ENST00000417448 TAF1LQ8IZX4 1826 aa25.39■■□□□ 1.65
VCP-202ENST00000417448 LTV1Q96GA3 475 aaPredicted RBP25.38■■□□□ 1.65
VCP-202ENST00000417448 CLSPNQ9HAW4 1339 aa25.37■■□□□ 1.65
VCP-202ENST00000417448 MEGF6O75095 1541 aa25.37■■□□□ 1.65
VCP-202ENST00000417448 IP6K1Q92551 441 aa25.37■■□□□ 1.65
VCP-202ENST00000417448 EDC4Q6P2E9 1401 aaKnown RBP25.36■■□□□ 1.65
VCP-202ENST00000417448 CD2APQ9Y5K6 639 aa25.35■■□□□ 1.65
VCP-202ENST00000417448 TOGARAM1Q9Y4F4 1720 aa25.34■■□□□ 1.65
VCP-202ENST00000417448 A0A1W2PP64 1363 aa25.32■■□□□ 1.64
VCP-202ENST00000417448 USP47Q96K76 1375 aa25.32■■□□□ 1.64
VCP-202ENST00000417448 SLC12A5Q9H2X9 1139 aa25.32■■□□□ 1.64
VCP-202ENST00000417448 ZCRB1Q8TBF4 217 aaKnown RBP25.31■■□□□ 1.64
VCP-202ENST00000417448 TMC1Q8TDI8 760 aa25.31■■□□□ 1.64
VCP-202ENST00000417448 HDGFL2Q7Z4V5 671 aaPredicted RBP25.29■■□□□ 1.64
VCP-202ENST00000417448 KIF3CO14782 793 aa25.28■■□□□ 1.64
VCP-202ENST00000417448 WWC3Q9ULE0 1092 aa25.28■■□□□ 1.64
VCP-202ENST00000417448 C4BP0C0L5 1744 aa25.28■■□□□ 1.64
VCP-202ENST00000417448 UBR3Q6ZT12 1888 aa25.28■■□□□ 1.64
VCP-202ENST00000417448 FBLN1P23142 703 aa25.27■■□□□ 1.64
VCP-202ENST00000417448 HOXC9P31274 260 aa25.27■■□□□ 1.64
VCP-202ENST00000417448 AMIGO3Q86WK7 504 aa25.27■■□□□ 1.64
VCP-202ENST00000417448 MAP3K19Q56UN5 1328 aa25.27■■□□□ 1.64
VCP-202ENST00000417448 IGSF1Q8N6C5 1336 aa25.26■■□□□ 1.63
VCP-202ENST00000417448 CARD11Q9BXL7 1154 aa25.24■■□□□ 1.63
VCP-202ENST00000417448 CICQ96RK0 1608 aaPredicted RBP25.23■■□□□ 1.63
VCP-202ENST00000417448 ITGB4P16144 1822 aa25.23■■□□□ 1.63
VCP-202ENST00000417448 PALLDQ8WX93 1383 aa25.22■■□□□ 1.63
VCP-202ENST00000417448 SMIM5Q71RC9 77 aa25.21■■□□□ 1.63
VCP-202ENST00000417448 FLAD1Q8NFF5 587 aa25.21■■□□□ 1.63
VCP-202ENST00000417448 TERF2IPQ9NYB0 399 aa25.21■■□□□ 1.63
VCP-202ENST00000417448 NBPF6Q5VWK0 638 aa25.2■■□□□ 1.62
VCP-202ENST00000417448 USHBP1Q8N6Y0 703 aa25.2■■□□□ 1.62
VCP-202ENST00000417448 NBPF4Q96M43 638 aa25.2■■□□□ 1.62
VCP-202ENST00000417448 TIMELESSQ9UNS1 1208 aa25.2■■□□□ 1.62
VCP-202ENST00000417448 AMPHP49418 695 aa25.19■■□□□ 1.62
VCP-202ENST00000417448 KIAA1551Q9HCM1 1747 aa25.18■■□□□ 1.62
VCP-202ENST00000417448 DNAJC5GQ8N7S2 189 aa25.18■■□□□ 1.62
VCP-202ENST00000417448 MAP2P11137 1827 aaKnown RBP25.17■■□□□ 1.62
VCP-202ENST00000417448 APLP1P51693 650 aa25.16■■□□□ 1.62
VCP-202ENST00000417448 COG3Q96JB2 828 aa25.16■■□□□ 1.62
VCP-202ENST00000417448 CGNL1Q0VF96 1302 aa25.15■■□□□ 1.62
VCP-202ENST00000417448 MPRIPQ6WCQ1 1025 aa25.15■■□□□ 1.62
VCP-202ENST00000417448 RTL1A6NKG5 1358 aa25.15■■□□□ 1.62
VCP-202ENST00000417448 WDR90Q96KV7 1748 aa25.15■■□□□ 1.62
VCP-202ENST00000417448 KIF13BQ9NQT8 1826 aa25.14■■□□□ 1.62
VCP-202ENST00000417448 PHF14O94880 888 aa25.14■■□□□ 1.62
VCP-202ENST00000417448 N4BP2Q86UW6 1770 aaPredicted RBP25.13■■□□□ 1.61
VCP-202ENST00000417448 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.13■■□□□ 1.61
VCP-202ENST00000417448 AK7Q96M32 723 aa25.13■■□□□ 1.61
VCP-202ENST00000417448 RRS1Q15050 365 aaKnown RBP25.12■■□□□ 1.61
VCP-202ENST00000417448 RAPGEF4Q8WZA2 1011 aa25.12■■□□□ 1.61
VCP-202ENST00000417448 PCDH11XQ9BZA7 1347 aa25.12■■□□□ 1.61
VCP-202ENST00000417448 PCDH11YQ9BZA8 1340 aa25.12■■□□□ 1.61
VCP-202ENST00000417448 PKD1L3Q7Z443 1732 aa25.11■■□□□ 1.61
VCP-202ENST00000417448 CYP27B1O15528 508 aa25.1■■□□□ 1.61
VCP-202ENST00000417448 PXDNLA1KZ92 1463 aa25.09■■□□□ 1.61
VCP-202ENST00000417448 PCNTO95613 3336 aa25.09■■□□□ 1.61
VCP-202ENST00000417448 TOMM70O94826 608 aa25.09■■□□□ 1.61
VCP-202ENST00000417448 TATP17735 454 aaPredicted RBP25.09■■□□□ 1.61
VCP-202ENST00000417448 PUS7Q96PZ0 661 aaKnown RBP25.09■■□□□ 1.61
VCP-202ENST00000417448 NSD3Q9BZ95 1437 aa25.08■■□□□ 1.61
VCP-202ENST00000417448 ST20-MTHFSA0A0A6YYL1 179 aa25.07■■□□□ 1.6
VCP-202ENST00000417448 HMGB2P26583 209 aaKnown RBP25.07■■□□□ 1.6
VCP-202ENST00000417448 LINC00116Q8NCU8 138 aa25.07■■□□□ 1.6
VCP-202ENST00000417448 SMG6Q86US8 1419 aaKnown RBP25.06■■□□□ 1.6
VCP-202ENST00000417448 SSFA2P28290 1259 aa25.06■■□□□ 1.6
VCP-202ENST00000417448 SMARCC1Q92922 1105 aaPredicted RBP25.06■■□□□ 1.6
VCP-202ENST00000417448 BRCA1P38398 1863 aaKnown RBP25.06■■□□□ 1.6
VCP-202ENST00000417448 PIGBQ92521 554 aa25.05■■□□□ 1.6
VCP-202ENST00000417448 NMRK2Q9NPI5 230 aa25.05■■□□□ 1.6
VCP-202ENST00000417448 HSP90AB2PQ58FF8 381 aa25.03■■□□□ 1.6
VCP-202ENST00000417448 HTRA3P83110 453 aa25.02■■□□□ 1.6
VCP-202ENST00000417448 COL13A1Q5TAT6 717 aaPredicted RBP25.02■■□□□ 1.6
VCP-202ENST00000417448 INSRP06213 1382 aa25.02■■□□□ 1.6
VCP-202ENST00000417448 LOC102724428A0A0B4J2F2 783 aa25.01■■□□□ 1.59
VCP-202ENST00000417448 SIK1P57059 783 aa25.01■■□□□ 1.59
VCP-202ENST00000417448 TESK2Q96S53 571 aa25.01■■□□□ 1.59
VCP-202ENST00000417448 MMP10P09238 476 aa25■■□□□ 1.59
VCP-202ENST00000417448 ITPK1Q13572 414 aa25■■□□□ 1.59
VCP-202ENST00000417448 GGNBP2Q9H3C7 697 aa25■■□□□ 1.59
VCP-202ENST00000417448 KIF20BQ96Q89 1820 aa25■■□□□ 1.59
VCP-202ENST00000417448 FYB1O15117 783 aa24.99■■□□□ 1.59
VCP-202ENST00000417448 GNPATO15228 680 aa24.99■■□□□ 1.59
VCP-202ENST00000417448 BCS1LQ9Y276 419 aa24.99■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 1224.2 ms