RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 TULP4Q9NRJ4 1543 aa17.99■□□□□ 0.47
NCKIPSD-204ENST00000416649 SBNO2Q9Y2G9 1366 aa17.98■□□□□ 0.47
NCKIPSD-204ENST00000416649 CDC45O75419 566 aa17.98■□□□□ 0.47
NCKIPSD-204ENST00000416649 PLCB2Q00722 1185 aa17.98■□□□□ 0.47
NCKIPSD-204ENST00000416649 RABEP1Q15276 862 aa17.98■□□□□ 0.47
NCKIPSD-204ENST00000416649 AGLP35573 1532 aa17.97■□□□□ 0.47
NCKIPSD-204ENST00000416649 GTPBP4Q9BZE4 634 aaKnown RBP17.97■□□□□ 0.47
NCKIPSD-204ENST00000416649 TTC12Q9H892 705 aaPredicted RBP17.97■□□□□ 0.47
NCKIPSD-204ENST00000416649 A0A1W2PP64 1363 aa17.97■□□□□ 0.47
NCKIPSD-204ENST00000416649 KIF3AQ9Y496 699 aa17.97■□□□□ 0.47
NCKIPSD-204ENST00000416649 GTF2E1P29083 439 aaPredicted RBP17.96■□□□□ 0.47
NCKIPSD-204ENST00000416649 ALKQ9UM73 1620 aa17.96■□□□□ 0.47
NCKIPSD-204ENST00000416649 IPO8O15397 1037 aaKnown RBP17.96■□□□□ 0.47
NCKIPSD-204ENST00000416649 NOLC1Q14978 699 aaKnown RBP eCLIP17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 CCDC27Q2M243 656 aa17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 RBM33Q96EV2 1170 aaKnown RBP17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 TSPY26PQ9H489 355 aa17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 APBB1O00213 710 aa17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 KIF20AO95235 890 aa17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 HMGN5P82970 282 aaKnown RBP17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 ARHGEF28Q8N1W1 1705 aaKnown RBP17.95■□□□□ 0.46
NCKIPSD-204ENST00000416649 SOX12O15370 315 aa17.94■□□□□ 0.46
NCKIPSD-204ENST00000416649 CYP2E1P05181 493 aaPredicted RBP17.94■□□□□ 0.46
NCKIPSD-204ENST00000416649 PDCL2Q8N4E4 241 aa17.94■□□□□ 0.46
NCKIPSD-204ENST00000416649 ZRANB1Q9UGI0 708 aa17.94■□□□□ 0.46
NCKIPSD-204ENST00000416649 LETM1O95202 739 aaPredicted RBP17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 PRIMPOLQ96LW4 560 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 THUMPD2Q9BTF0 503 aaKnown RBP17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 CGNQ9P2M7 1197 aaKnown RBP17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 USP25Q9UHP3 1055 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 ZDHHC9Q9Y397 364 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 PTPRMP28827 1452 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 NOL8Q76FK4 1167 aaKnown RBP17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 BCL2L12Q9HB09 334 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 ZFYVE9O95405 1425 aa17.93■□□□□ 0.46
NCKIPSD-204ENST00000416649 VGLL3A8MV65 326 aa17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 U2AF2P26368 475 aaKnown RBP eCLIP17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 TERF2IPQ9NYB0 399 aa17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 ZNF771Q7L3S4 317 aaPredicted RBP17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 IQSEC2Q5JU85 1478 aa17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 FYB1O15117 783 aa17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 ST18O60284 1047 aa17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 CHMP4BQ9H444 224 aaKnown RBP17.92■□□□□ 0.46
NCKIPSD-204ENST00000416649 HDGFL2Q7Z4V5 671 aaPredicted RBP17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 GDPD2Q9HCC8 539 aa17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 ANKRD36BQ8N2N9 1353 aa17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 CT47B1P0C2W7 299 aaPredicted RBP17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 CWC22Q9HCG8 908 aaKnown RBP17.91■□□□□ 0.46
NCKIPSD-204ENST00000416649 PIBF1Q8WXW3 757 aa17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 GCC1Q96CN9 775 aa17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 BCL11BQ9C0K0 894 aaPredicted RBP17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 SPATA31D1Q6ZQQ2 1576 aa17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 MYO3AQ8NEV4 1616 aa17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 GSPT1P15170 499 aaKnown RBP17.9■□□□□ 0.46
NCKIPSD-204ENST00000416649 ZBTB22O15209 634 aa17.89■□□□□ 0.46
NCKIPSD-204ENST00000416649 MBD3O95983 291 aa17.89■□□□□ 0.45
NCKIPSD-204ENST00000416649 MAPK8IP2Q13387 824 aaPredicted RBP17.89■□□□□ 0.45
NCKIPSD-204ENST00000416649 TMPOP42166 694 aaKnown RBP17.88■□□□□ 0.45
NCKIPSD-204ENST00000416649 HDGFP51858 240 aaKnown RBP17.88■□□□□ 0.45
NCKIPSD-204ENST00000416649 REREQ9P2R6 1566 aa17.88■□□□□ 0.45
NCKIPSD-204ENST00000416649 TMEM2Q9UHN6 1383 aa17.88■□□□□ 0.45
NCKIPSD-204ENST00000416649 PPIP5K1Q6PFW1 1433 aa17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 USP26Q9BXU7 913 aa17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 NAP1L2Q9ULW6 460 aaPredicted RBP17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 EID1Q9Y6B2 187 aa17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 NME9Q86XW9 330 aa17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 C16orf71Q8IYS4 520 aaPredicted RBP17.87■□□□□ 0.45
NCKIPSD-204ENST00000416649 WASLO00401 505 aaPredicted RBP17.86■□□□□ 0.45
NCKIPSD-204ENST00000416649 ADCY5O95622 1261 aa17.86■□□□□ 0.45
NCKIPSD-204ENST00000416649 NUDT16Q96DE0 195 aaKnown RBP17.86■□□□□ 0.45
NCKIPSD-204ENST00000416649 TRIM35Q9UPQ4 493 aa17.86■□□□□ 0.45
NCKIPSD-204ENST00000416649 CHAF1AQ13111 956 aaPredicted RBP17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 SYAP1Q96A49 352 aaPredicted RBP17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 ATAD2Q6PL18 1390 aa17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 SHPRHQ149N8 1683 aa17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 ZBTB7BO15156 539 aaPredicted RBP17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 CDK11BP21127 795 aaKnown RBP17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 SIRT2Q8IXJ6 389 aa17.85■□□□□ 0.45
NCKIPSD-204ENST00000416649 RIOK3O14730 519 aaKnown RBP17.84■□□□□ 0.45
NCKIPSD-204ENST00000416649 ROBO2Q9HCK4 1378 aa17.83■□□□□ 0.45
NCKIPSD-204ENST00000416649 GADD45BO75293 160 aaPredicted RBP17.83■□□□□ 0.45
NCKIPSD-204ENST00000416649 HMOX1P09601 288 aa17.83■□□□□ 0.45
NCKIPSD-204ENST00000416649 GTF2F1P35269 517 aaKnown RBP eCLIP17.83■□□□□ 0.452e-6■■■■□ 23.4
NCKIPSD-204ENST00000416649 INTS3Q68E01 1043 aaKnown RBP17.83■□□□□ 0.45
NCKIPSD-204ENST00000416649 TMEM51Q9NW97 253 aa17.83■□□□□ 0.45
NCKIPSD-204ENST00000416649 NEK4P51957 841 aa17.83■□□□□ 0.44
NCKIPSD-204ENST00000416649 PLEKHM2Q8IWE5 1019 aa17.83■□□□□ 0.44
NCKIPSD-204ENST00000416649 HCLS1P14317 486 aaPredicted RBP17.82■□□□□ 0.44
NCKIPSD-204ENST00000416649 RRS1Q15050 365 aaKnown RBP17.82■□□□□ 0.44
NCKIPSD-204ENST00000416649 AMOTL2Q9Y2J4 779 aa17.82■□□□□ 0.44
NCKIPSD-204ENST00000416649 OTUD7AQ8TE49 926 aaPredicted RBP17.82■□□□□ 0.44
NCKIPSD-204ENST00000416649 FKBP5Q13451 457 aaPredicted RBP17.82■□□□□ 0.44
NCKIPSD-204ENST00000416649 PLCD3Q8N3E9 789 aa17.81■□□□□ 0.44
NCKIPSD-204ENST00000416649 SPC24Q8NBT2 197 aa17.81■□□□□ 0.44
NCKIPSD-204ENST00000416649 EMILIN1Q9Y6C2 1016 aa17.81■□□□□ 0.44
NCKIPSD-204ENST00000416649 ABCC11Q96J66 1382 aa17.81■□□□□ 0.44
NCKIPSD-204ENST00000416649 CASC1Q6TDU7 716 aa17.81■□□□□ 0.44
NCKIPSD-204ENST00000416649 SMARCA5O60264 1052 aaPredicted RBP17.8■□□□□ 0.44
NCKIPSD-204ENST00000416649 PHF14O94880 888 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms