RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 USP31Q70CQ4 1352 aa13.39□□□□□ -0.27
LINC01238-201ENST00000416204 CD163L1Q9NR16 1453 aa13.38□□□□□ -0.27
LINC01238-201ENST00000416204 NSD2O96028 1365 aa13.38□□□□□ -0.27
LINC01238-201ENST00000416204 MON2Q7Z3U7 1717 aa13.38□□□□□ -0.27
LINC01238-201ENST00000416204 GRIN3BO60391 1043 aa13.37□□□□□ -0.27
LINC01238-201ENST00000416204 DOT1LQ8TEK3 1739 aa13.36□□□□□ -0.27
LINC01238-201ENST00000416204 ANKRD36BQ8N2N9 1353 aa13.36□□□□□ -0.27
LINC01238-201ENST00000416204 SMIM5Q71RC9 77 aa13.36□□□□□ -0.27
LINC01238-201ENST00000416204 USHBP1Q8N6Y0 703 aa13.36□□□□□ -0.27
LINC01238-201ENST00000416204 GPBP1L1Q9HC44 474 aaPredicted RBP13.36□□□□□ -0.27
LINC01238-201ENST00000416204 HDGFL2Q7Z4V5 671 aaPredicted RBP13.35□□□□□ -0.27
LINC01238-201ENST00000416204 IP6K1Q92551 441 aa13.35□□□□□ -0.27
LINC01238-201ENST00000416204 QSER1Q2KHR3 1735 aa13.35□□□□□ -0.27
LINC01238-201ENST00000416204 COL24A1Q17RW2 1714 aa13.34□□□□□ -0.27
LINC01238-201ENST00000416204 ZCRB1Q8TBF4 217 aaKnown RBP13.34□□□□□ -0.27
LINC01238-201ENST00000416204 MEGF6O75095 1541 aa13.34□□□□□ -0.27
LINC01238-201ENST00000416204 A0A1W2PP64 1363 aa13.33□□□□□ -0.27
LINC01238-201ENST00000416204 MAP3K19Q56UN5 1328 aa13.33□□□□□ -0.28
LINC01238-201ENST00000416204 EDC4Q6P2E9 1401 aaKnown RBP13.32□□□□□ -0.28
LINC01238-201ENST00000416204 USP54Q70EL1 1684 aa13.32□□□□□ -0.28
LINC01238-201ENST00000416204 AMPHP49418 695 aa13.32□□□□□ -0.28
LINC01238-201ENST00000416204 AMIGO3Q86WK7 504 aa13.32□□□□□ -0.28
LINC01238-201ENST00000416204 USP47Q96K76 1375 aa13.32□□□□□ -0.28
LINC01238-201ENST00000416204 PHF14O94880 888 aa13.31□□□□□ -0.28
LINC01238-201ENST00000416204 HSPA6P17066 643 aa13.31□□□□□ -0.28
LINC01238-201ENST00000416204 HOXC9P31274 260 aa13.31□□□□□ -0.28
LINC01238-201ENST00000416204 LY75O60449 1722 aa13.3□□□□□ -0.28
LINC01238-201ENST00000416204 CARD11Q9BXL7 1154 aa13.3□□□□□ -0.28
LINC01238-201ENST00000416204 TERF2IPQ9NYB0 399 aa13.3□□□□□ -0.28
LINC01238-201ENST00000416204 RGPD2P0DJD1 1756 aa13.3□□□□□ -0.28
LINC01238-201ENST00000416204 FAM208AQ9UK61 1670 aaKnown RBP13.29□□□□□ -0.28
LINC01238-201ENST00000416204 RRS1Q15050 365 aaKnown RBP13.29□□□□□ -0.28
LINC01238-201ENST00000416204 NBPF6Q5VWK0 638 aa13.29□□□□□ -0.28
LINC01238-201ENST00000416204 NBPF4Q96M43 638 aa13.29□□□□□ -0.28
LINC01238-201ENST00000416204 ADCY9O60503 1353 aa13.29□□□□□ -0.28
LINC01238-201ENST00000416204 MPRIPQ6WCQ1 1025 aa13.28□□□□□ -0.28
LINC01238-201ENST00000416204 COG3Q96JB2 828 aa13.28□□□□□ -0.28
LINC01238-201ENST00000416204 CD2APQ9Y5K6 639 aa13.28□□□□□ -0.28
LINC01238-201ENST00000416204 IGSF1Q8N6C5 1336 aa13.28□□□□□ -0.28
LINC01238-201ENST00000416204 PALLDQ8WX93 1383 aa13.27□□□□□ -0.29
LINC01238-201ENST00000416204 C5P01031 1676 aa13.26□□□□□ -0.29
LINC01238-201ENST00000416204 AK7Q96M32 723 aa13.26□□□□□ -0.29
LINC01238-201ENST00000416204 KIF3CO14782 793 aa13.25□□□□□ -0.29
LINC01238-201ENST00000416204 RAPGEF4Q8WZA2 1011 aa13.25□□□□□ -0.29
LINC01238-201ENST00000416204 GGNBP2Q9H3C7 697 aa13.24□□□□□ -0.29
LINC01238-201ENST00000416204 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.23□□□□□ -0.29
LINC01238-201ENST00000416204 TATP17735 454 aaPredicted RBP13.23□□□□□ -0.29
LINC01238-201ENST00000416204 CYP27B1O15528 508 aa13.22□□□□□ -0.29
LINC01238-201ENST00000416204 HSP90AB2PQ58FF8 381 aa13.22□□□□□ -0.29
LINC01238-201ENST00000416204 FLAD1Q8NFF5 587 aa13.22□□□□□ -0.29
LINC01238-201ENST00000416204 C4BP0C0L5 1744 aa13.22□□□□□ -0.29
LINC01238-201ENST00000416204 HTRA3P83110 453 aa13.21□□□□□ -0.29
LINC01238-201ENST00000416204 LINC00116Q8NCU8 138 aa13.21□□□□□ -0.29
LINC01238-201ENST00000416204 TOGARAM1Q9Y4F4 1720 aa13.21□□□□□ -0.3
LINC01238-201ENST00000416204 PCDH11XQ9BZA7 1347 aa13.2□□□□□ -0.3
LINC01238-201ENST00000416204 PCDH11YQ9BZA8 1340 aa13.2□□□□□ -0.3
LINC01238-201ENST00000416204 PIGBQ92521 554 aa13.2□□□□□ -0.3
LINC01238-201ENST00000416204 TAF1LQ8IZX4 1826 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 ST20-MTHFSA0A0A6YYL1 179 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 GNPATO15228 680 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 CAPN15O75808 1086 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 NMRK2Q9NPI5 230 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 SMG6Q86US8 1419 aaKnown RBP13.19□□□□□ -0.3
LINC01238-201ENST00000416204 RTL1A6NKG5 1358 aa13.19□□□□□ -0.3
LINC01238-201ENST00000416204 A0A0G2JLW4 131 aa13.18□□□□□ -0.3
LINC01238-201ENST00000416204 FYB1O15117 783 aa13.18□□□□□ -0.3
LINC01238-201ENST00000416204 MMP10P09238 476 aa13.18□□□□□ -0.3
LINC01238-201ENST00000416204 TESK2Q96S53 571 aa13.18□□□□□ -0.3
LINC01238-201ENST00000416204 BCS1LQ9Y276 419 aa13.18□□□□□ -0.3
LINC01238-201ENST00000416204 CGNL1Q0VF96 1302 aa13.17□□□□□ -0.3
LINC01238-201ENST00000416204 APLP1P51693 650 aa13.17□□□□□ -0.3
LINC01238-201ENST00000416204 ITPK1Q13572 414 aa13.17□□□□□ -0.3
LINC01238-201ENST00000416204 DNAJC5GQ8N7S2 189 aa13.17□□□□□ -0.3
LINC01238-201ENST00000416204 SMARCC1Q92922 1105 aaPredicted RBP13.17□□□□□ -0.3
LINC01238-201ENST00000416204 ASAP1Q9ULH1 1129 aa13.17□□□□□ -0.3
LINC01238-201ENST00000416204 PCNTO95613 3336 aa13.16□□□□□ -0.3
LINC01238-201ENST00000416204 LOC102724428A0A0B4J2F2 783 aa13.16□□□□□ -0.3
LINC01238-201ENST00000416204 SIK1P57059 783 aa13.16□□□□□ -0.3
LINC01238-201ENST00000416204 ARHGAP27Q6ZUM4 889 aa13.16□□□□□ -0.3
LINC01238-201ENST00000416204 UBR3Q6ZT12 1888 aa13.16□□□□□ -0.3
LINC01238-201ENST00000416204 PPM1GO15355 546 aaPredicted RBP13.15□□□□□ -0.3
LINC01238-201ENST00000416204 SSFA2P28290 1259 aa13.15□□□□□ -0.3
LINC01238-201ENST00000416204 EMILIN1Q9Y6C2 1016 aa13.15□□□□□ -0.3
LINC01238-201ENST00000416204 PXDNLA1KZ92 1463 aa13.15□□□□□ -0.3
LINC01238-201ENST00000416204 TOMM70O94826 608 aa13.14□□□□□ -0.31
LINC01238-201ENST00000416204 ATP6V1AP38606 617 aa13.14□□□□□ -0.31
LINC01238-201ENST00000416204 COL13A1Q5TAT6 717 aaPredicted RBP13.14□□□□□ -0.31
LINC01238-201ENST00000416204 INSRP06213 1382 aa13.14□□□□□ -0.31
LINC01238-201ENST00000416204 ITGB4P16144 1822 aa13.13□□□□□ -0.31
LINC01238-201ENST00000416204 DPEP1P16444 411 aa13.13□□□□□ -0.31
LINC01238-201ENST00000416204 PUS7Q96PZ0 661 aaKnown RBP13.13□□□□□ -0.31
LINC01238-201ENST00000416204 TMOD3Q9NYL9 352 aa13.13□□□□□ -0.31
LINC01238-201ENST00000416204 CICQ96RK0 1608 aaPredicted RBP13.13□□□□□ -0.31
LINC01238-201ENST00000416204 N4BP2Q86UW6 1770 aaPredicted RBP13.12□□□□□ -0.31
LINC01238-201ENST00000416204 FLT4P35916 1363 aa13.12□□□□□ -0.31
LINC01238-201ENST00000416204 TONSLQ96HA7 1378 aa13.12□□□□□ -0.31
LINC01238-201ENST00000416204 FCHSD2O94868 740 aa13.12□□□□□ -0.31
LINC01238-201ENST00000416204 NSD3Q9BZ95 1437 aa13.12□□□□□ -0.31
LINC01238-201ENST00000416204 C9orf131Q5VYM1 1079 aa13.11□□□□□ -0.31
LINC01238-201ENST00000416204 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms