RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 ZSCAN29Q8IWY8 852 aaPredicted RBP18.72■□□□□ 0.59
PHRF1-203ENST00000416188 PPIP5K1Q6PFW1 1433 aa18.72■□□□□ 0.59
PHRF1-203ENST00000416188 NFKBIBQ15653 356 aa18.72■□□□□ 0.59
PHRF1-203ENST00000416188 HSP90AB3PQ58FF7 597 aa18.72■□□□□ 0.59
PHRF1-203ENST00000416188 VSIG10Q8N0Z9 540 aa18.72■□□□□ 0.59
PHRF1-203ENST00000416188 C1orf115Q9H7X2 142 aa18.72■□□□□ 0.59
PHRF1-203ENST00000416188 ABCA5Q8WWZ7 1642 aa18.71■□□□□ 0.59
PHRF1-203ENST00000416188 TRMT112Q9UI30 125 aaKnown RBP18.71■□□□□ 0.59
PHRF1-203ENST00000416188 PRM3Q9NNZ6 103 aa18.71■□□□□ 0.59
PHRF1-203ENST00000416188 PDZRN3Q9UPQ7 1066 aa18.71■□□□□ 0.59
PHRF1-203ENST00000416188 CNTROBQ8N137 903 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 ATP2B2Q01814 1243 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.7■□□□□ 0.583e-7■■■□□ 16.9
PHRF1-203ENST00000416188 TMOD2Q9NZR1 351 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 BCAR3O75815 825 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 CCDC73Q6ZRK6 1079 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 IPO7O95373 1038 aaKnown RBP18.7■□□□□ 0.58
PHRF1-203ENST00000416188 SASS6Q6UVJ0 657 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 CCDC47Q96A33 483 aaKnown RBP18.7■□□□□ 0.58
PHRF1-203ENST00000416188 BTG4Q9NY30 223 aa18.7■□□□□ 0.58
PHRF1-203ENST00000416188 LARP1Q6PKG0 1096 aaKnown RBP18.69■□□□□ 0.58
PHRF1-203ENST00000416188 CCDC43Q96MW1 224 aaKnown RBP18.69■□□□□ 0.58
PHRF1-203ENST00000416188 ANKIB1Q9P2G1 1089 aa18.69■□□□□ 0.58
PHRF1-203ENST00000416188 ZFYVE16Q7Z3T8 1539 aa18.69■□□□□ 0.58
PHRF1-203ENST00000416188 ANKRD20A12PQ8NF67 263 aa18.69■□□□□ 0.58
PHRF1-203ENST00000416188 SLAIN2Q9P270 581 aa18.69■□□□□ 0.58
PHRF1-203ENST00000416188 SAFBQ15424 915 aaKnown RBP eCLIP18.69■□□□□ 0.58
PHRF1-203ENST00000416188 IL2RBP14784 551 aa18.68■□□□□ 0.58
PHRF1-203ENST00000416188 SMARCC1Q92922 1105 aaPredicted RBP18.68■□□□□ 0.58
PHRF1-203ENST00000416188 MYD88Q99836 296 aa18.68■□□□□ 0.58
PHRF1-203ENST00000416188 HOOK1Q9UJC3 728 aaKnown RBP18.68■□□□□ 0.58
PHRF1-203ENST00000416188 GPTP24298 496 aa18.68■□□□□ 0.58
PHRF1-203ENST00000416188 HOMER1Q86YM7 354 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 ZNF622Q969S3 477 aaKnown RBP eCLIP18.67■□□□□ 0.583e-7■■■■□ 25.2
PHRF1-203ENST00000416188 FBLN1P23142 703 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 HSP90AB2PQ58FF8 381 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 ZBTB3Q9H5J0 574 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 SRGAP3O43295 1099 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 CT47B1P0C2W7 299 aaPredicted RBP18.67■□□□□ 0.58
PHRF1-203ENST00000416188 ATP7AQ04656 1500 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 SART3Q15020 963 aaKnown RBP18.67■□□□□ 0.58
PHRF1-203ENST00000416188 RPRD2Q5VT52 1461 aaKnown RBP18.67■□□□□ 0.58
PHRF1-203ENST00000416188 A0A087WZG4 1122 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 ATP6V1AP38606 617 aa18.67■□□□□ 0.58
PHRF1-203ENST00000416188 PAXIP1Q6ZW49 1069 aaPredicted RBP18.67■□□□□ 0.58
PHRF1-203ENST00000416188 GCP02774 474 aa18.66■□□□□ 0.58
PHRF1-203ENST00000416188 NEK4P51957 841 aa18.66■□□□□ 0.58
PHRF1-203ENST00000416188 RRP12Q5JTH9 1297 aaKnown RBP18.66■□□□□ 0.58
PHRF1-203ENST00000416188 ORAI2Q96SN7 254 aa18.66■□□□□ 0.58
PHRF1-203ENST00000416188 RAI14Q9P0K7 980 aa18.66■□□□□ 0.58
PHRF1-203ENST00000416188 PDE3AQ14432 1141 aa18.66■□□□□ 0.58
PHRF1-203ENST00000416188 METTL24Q5JXM2 366 aa18.65■□□□□ 0.58
PHRF1-203ENST00000416188 FKBP4Q02790 459 aaKnown RBP eCLIP18.65■□□□□ 0.583e-6■□□□□ 10.7
PHRF1-203ENST00000416188 NSD2O96028 1365 aa18.65■□□□□ 0.58
PHRF1-203ENST00000416188 POLD1P28340 1107 aa18.65■□□□□ 0.58
PHRF1-203ENST00000416188 TFCP2L1Q9NZI6 479 aa18.65■□□□□ 0.58
PHRF1-203ENST00000416188 SPINK5Q9NQ38 1064 aaPredicted RBP18.64■□□□□ 0.58
PHRF1-203ENST00000416188 PTPRKQ15262 1439 aa18.64■□□□□ 0.57
PHRF1-203ENST00000416188 RNF214Q8ND24 703 aa18.64■□□□□ 0.57
PHRF1-203ENST00000416188 NACAP1Q9BZK3 213 aa18.64■□□□□ 0.57
PHRF1-203ENST00000416188 PSMA5P28066 241 aa18.63■□□□□ 0.57
PHRF1-203ENST00000416188 KDM4AO75164 1064 aa18.63■□□□□ 0.57
PHRF1-203ENST00000416188 IFT57Q9NWB7 429 aa18.63■□□□□ 0.57
PHRF1-203ENST00000416188 LRP2BPQ9P2M1 347 aa18.63■□□□□ 0.57
PHRF1-203ENST00000416188 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.63■□□□□ 0.57
PHRF1-203ENST00000416188 C6orf229H3BNL8 230 aa18.63■□□□□ 0.57
PHRF1-203ENST00000416188 ATF7IPQ6VMQ6 1270 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 DBF4Q9UBU7 674 aaPredicted RBP18.62■□□□□ 0.57
PHRF1-203ENST00000416188 CCDC70Q6NSX1 233 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 SDF4Q9BRK5 362 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 TARBP1Q13395 1621 aaKnown RBP18.62■□□□□ 0.57
PHRF1-203ENST00000416188 YEATS2Q9ULM3 1422 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 CAVIN4Q5BKX8 364 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 ABCF2Q9UG63 623 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 HYPKQ9NX55 129 aa18.62■□□□□ 0.57
PHRF1-203ENST00000416188 ST5P78524 1137 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 HIP1O00291 1037 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 CCDC184Q52MB2 194 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 NBPF6Q5VWK0 638 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 NBPF5PQ86XG9 351 aaPredicted RBP18.61■□□□□ 0.57
PHRF1-203ENST00000416188 NBPF4Q96M43 638 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 ANKRD36BQ8N2N9 1353 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 SNRPA1P09661 255 aaKnown RBP18.61■□□□□ 0.57
PHRF1-203ENST00000416188 AACSQ86V21 672 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 GCC1Q96CN9 775 aa18.61■□□□□ 0.57
PHRF1-203ENST00000416188 IFIT1P09914 478 aaKnown RBP18.6■□□□□ 0.57
PHRF1-203ENST00000416188 IFIT5Q13325 482 aaKnown RBP18.6■□□□□ 0.57
PHRF1-203ENST00000416188 ZSCAN25Q6NSZ9 544 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 STK11IPQ8N1F8 1099 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 FAM13BQ9NYF5 915 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 USP21Q9UK80 565 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 IL27Q8NEV9 243 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 LRRCC1Q9C099 1032 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 SHANK2Q9UPX8 1470 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 TTLL12Q14166 644 aaPredicted RBP18.6■□□□□ 0.57
PHRF1-203ENST00000416188 PPP1R42Q7Z4L9 355 aa18.6■□□□□ 0.57
PHRF1-203ENST00000416188 DDX46Q7L014 1031 aaKnown RBP18.59■□□□□ 0.57
PHRF1-203ENST00000416188 BRPF3Q9ULD4 1205 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 TRPM2O94759 1503 aa18.59■□□□□ 0.57
PHRF1-203ENST00000416188 FAM43AQ8N2R8 423 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms