RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CWC22Q9HCG8 908 aaKnown RBP3.79□□□□□ -1.8
MCF2-204ENST00000414978 MAP10Q9P2G4 905 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 LHX6Q9UPM6 363 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 IGF1RP08069 1367 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 USP17L5A8MUK1 530 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 FAM174AQ8TBP5 190 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 LRP5O75197 1615 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 CNTLNQ9NXG0 1405 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 METRNQ9UJH8 293 aa3.79□□□□□ -1.8
MCF2-204ENST00000414978 XIRP1Q702N8 1843 aaKnown RBP3.79□□□□□ -1.8
MCF2-204ENST00000414978 MAGEB6P1A0A0J9YX57 407 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 TSGA10IPQ3SY00 556 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 EYA1Q99502 592 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 ATP10AO60312 1499 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 VWDEQ8N2E2 1590 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 ABCA6Q8N139 1617 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 NEURL4Q96JN8 1562 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 RAPGEF2Q9Y4G8 1499 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 POTEFA5A3E0 1075 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 BRD2P25440 801 aaKnown RBP3.78□□□□□ -1.8
MCF2-204ENST00000414978 PDE4CQ08493 712 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 NAA30Q147X3 362 aaPredicted RBP3.78□□□□□ -1.8
MCF2-204ENST00000414978 KANK4Q5T7N3 995 aaPredicted RBP3.78□□□□□ -1.8
MCF2-204ENST00000414978 HINFPQ9BQA5 517 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 PRDM16Q9HAZ2 1276 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.78□□□□□ -1.8
MCF2-204ENST00000414978 NBPF26B4DH59 902 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 PSEN2P49810 448 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 OXLD1Q5BKU9 147 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 TMC1Q8TDI8 760 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 PCDHB9Q9Y5E1 797 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 CAMSAP1Q5T5Y3 1602 aa3.78□□□□□ -1.8
MCF2-204ENST00000414978 ATP9BO43861 1147 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 CFHP08603 1231 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 ATP2B4P23634 1241 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 EIF4G2P78344 907 aaKnown RBP eCLIP3.77□□□□□ -1.81
MCF2-204ENST00000414978 DPYDQ12882 1025 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 AAMPQ13685 434 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 TTC13Q8NBP0 860 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 KIAA1468Q9P260 1216 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 SUGT1Q9Y2Z0 365 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 CEP170BQ9Y4F5 1589 aaPredicted RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 ATG7O95352 703 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 ELOAQ14241 798 aaKnown RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 LARGE2Q8N3Y3 721 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 DNAJC2Q99543 621 aaKnown RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 SEPT3Q9UH03 358 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 TCF3P15923 654 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 MAPK1P28482 360 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 ASTLQ6HA08 431 aaPredicted RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 PACS2Q86VP3 889 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 NLGN1Q8N2Q7 840 aa3.77□□□□□ -1.81
MCF2-204ENST00000414978 EIF2AK3Q9NZJ5 1116 aaKnown RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 ZC3H13Q5T200 1668 aaKnown RBP3.77□□□□□ -1.81
MCF2-204ENST00000414978 PLXNC1O60486 1568 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 RNF19BQ6ZMZ0 732 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 CDK12Q9NYV4 1490 aaPredicted RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.76□□□□□ -1.81
MCF2-204ENST00000414978 ATP10BO94823 1461 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 GCGRP47871 477 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 SLFNL1Q499Z3 407 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 GLYCTKQ8IVS8 523 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 OGFOD1Q8N543 542 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 KDM5AP29375 1690 aaKnown RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 STRCP1A6NGW2 1772 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 CDK13Q14004 1512 aaKnown RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 PTPREP23469 700 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 MRPL58Q14197 206 aaKnown RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 LARP1Q6PKG0 1096 aaKnown RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 SAMD7Q7Z3H4 446 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 METTL16Q86W50 562 aaKnown RBP3.76□□□□□ -1.81
MCF2-204ENST00000414978 RNF135Q8IUD6 432 aa3.76□□□□□ -1.81
MCF2-204ENST00000414978 PTPRKQ15262 1439 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L15C9J2P7 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 PATL2C9JE40 543 aaKnown RBP3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L10C9JJH3 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L13C9JLJ4 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L12C9JPN9 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L11C9JVI0 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L21D6R901 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L18D6R9N7 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L22D6RA61 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L17D6RBQ6 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L19D6RCP7 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L20D6RJB6 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 IGHA2P01877 340 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 USP17L24Q0WX57 530 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 CC2D2BQ6DHV5 1058 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 FAM200AQ8TCP9 573 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 SHPRHQ149N8 1683 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 ADGBQ8N7X0 1667 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 PPP1R3GB7ZBB8 358 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 STAU1O95793 577 aaKnown RBP3.75□□□□□ -1.81
MCF2-204ENST00000414978 SLF2Q8IX21 1173 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 TRAPPC8Q9Y2L5 1435 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 MED14O60244 1454 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 AGERQ15109 404 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 IER5LQ5T953 404 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 PNMA1Q8ND90 353 aa3.75□□□□□ -1.81
MCF2-204ENST00000414978 TPCN2Q8NHX9 752 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms