RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 MEGF6O75095 1541 aa13.64□□□□□ -0.23
RFFL-203ENST00000413582 YBX3P16989 372 aaKnown RBP eCLIP13.64□□□□□ -0.23
RFFL-203ENST00000413582 PRIM1P49642 420 aaKnown RBP13.63□□□□□ -0.23
RFFL-203ENST00000413582 HDGFL2Q7Z4V5 671 aaPredicted RBP13.63□□□□□ -0.23
RFFL-203ENST00000413582 IP6K1Q92551 441 aa13.63□□□□□ -0.23
RFFL-203ENST00000413582 SYTL4Q96C24 671 aaPredicted RBP13.63□□□□□ -0.23
RFFL-203ENST00000413582 SIN3AQ96ST3 1273 aa13.63□□□□□ -0.23
RFFL-203ENST00000413582 C5P01031 1676 aa13.63□□□□□ -0.23
RFFL-203ENST00000413582 TMC1Q8TDI8 760 aa13.62□□□□□ -0.23
RFFL-203ENST00000413582 LTV1Q96GA3 475 aaPredicted RBP13.62□□□□□ -0.23
RFFL-203ENST00000413582 SLC12A5Q9H2X9 1139 aa13.62□□□□□ -0.23
RFFL-203ENST00000413582 ATP10DQ9P241 1426 aa13.62□□□□□ -0.23
RFFL-203ENST00000413582 GRIN3BO60391 1043 aa13.61□□□□□ -0.23
RFFL-203ENST00000413582 CCNL1Q9UK58 526 aaPredicted RBP13.61□□□□□ -0.23
RFFL-203ENST00000413582 TAF1LQ8IZX4 1826 aa13.61□□□□□ -0.23
RFFL-203ENST00000413582 ADCY9O60503 1353 aa13.6□□□□□ -0.23
RFFL-203ENST00000413582 COL23A1Q86Y22 540 aaPredicted RBP13.6□□□□□ -0.23
RFFL-203ENST00000413582 MAP3K19Q56UN5 1328 aa13.6□□□□□ -0.23
RFFL-203ENST00000413582 TERF2IPQ9NYB0 399 aa13.59□□□□□ -0.23
RFFL-203ENST00000413582 HOXC9P31274 260 aa13.58□□□□□ -0.24
RFFL-203ENST00000413582 MSL1Q68DK7 614 aa13.58□□□□□ -0.24
RFFL-203ENST00000413582 ZCRB1Q8TBF4 217 aaKnown RBP13.58□□□□□ -0.24
RFFL-203ENST00000413582 TOGARAM1Q9Y4F4 1720 aa13.58□□□□□ -0.24
RFFL-203ENST00000413582 RTL1A6NKG5 1358 aa13.58□□□□□ -0.24
RFFL-203ENST00000413582 USP47Q96K76 1375 aa13.58□□□□□ -0.24
RFFL-203ENST00000413582 MSH5O43196 834 aa13.57□□□□□ -0.24
RFFL-203ENST00000413582 NEUROD1Q13562 356 aa13.57□□□□□ -0.24
RFFL-203ENST00000413582 CARD11Q9BXL7 1154 aa13.57□□□□□ -0.24
RFFL-203ENST00000413582 PUS7Q96PZ0 661 aaKnown RBP13.56□□□□□ -0.24
RFFL-203ENST00000413582 C4BP0C0L5 1744 aa13.56□□□□□ -0.24
RFFL-203ENST00000413582 UBR3Q6ZT12 1888 aa13.55□□□□□ -0.24
RFFL-203ENST00000413582 FBLN1P23142 703 aa13.55□□□□□ -0.24
RFFL-203ENST00000413582 AMPHP49418 695 aa13.55□□□□□ -0.24
RFFL-203ENST00000413582 CD2APQ9Y5K6 639 aa13.55□□□□□ -0.24
RFFL-203ENST00000413582 COG3Q96JB2 828 aa13.54□□□□□ -0.24
RFFL-203ENST00000413582 GPBP1L1Q9HC44 474 aaPredicted RBP13.54□□□□□ -0.24
RFFL-203ENST00000413582 ITGB4P16144 1822 aa13.54□□□□□ -0.24
RFFL-203ENST00000413582 CGNL1Q0VF96 1302 aa13.54□□□□□ -0.24
RFFL-203ENST00000413582 NBPF6Q5VWK0 638 aa13.53□□□□□ -0.24
RFFL-203ENST00000413582 NBPF4Q96M43 638 aa13.53□□□□□ -0.24
RFFL-203ENST00000413582 PALLDQ8WX93 1383 aa13.53□□□□□ -0.24
RFFL-203ENST00000413582 HSPA6P17066 643 aa13.52□□□□□ -0.25
RFFL-203ENST00000413582 USHBP1Q8N6Y0 703 aa13.52□□□□□ -0.25
RFFL-203ENST00000413582 SMG6Q86US8 1419 aaKnown RBP13.52□□□□□ -0.25
RFFL-203ENST00000413582 CICQ96RK0 1608 aaPredicted RBP13.52□□□□□ -0.25
RFFL-203ENST00000413582 PKD1L3Q7Z443 1732 aa13.52□□□□□ -0.25
RFFL-203ENST00000413582 MAP2P11137 1827 aaKnown RBP13.51□□□□□ -0.25
RFFL-203ENST00000413582 PCDH11XQ9BZA7 1347 aa13.51□□□□□ -0.25
RFFL-203ENST00000413582 PCDH11YQ9BZA8 1340 aa13.51□□□□□ -0.25
RFFL-203ENST00000413582 RRS1Q15050 365 aaKnown RBP13.51□□□□□ -0.25
RFFL-203ENST00000413582 AMIGO3Q86WK7 504 aa13.51□□□□□ -0.25
RFFL-203ENST00000413582 FLAD1Q8NFF5 587 aa13.51□□□□□ -0.25
RFFL-203ENST00000413582 TESK2Q96S53 571 aa13.51□□□□□ -0.25
RFFL-203ENST00000413582 ZNF526Q8TF50 670 aaPredicted RBP13.5□□□□□ -0.25
RFFL-203ENST00000413582 RAPGEF4Q8WZA2 1011 aa13.5□□□□□ -0.25
RFFL-203ENST00000413582 KIF20BQ96Q89 1820 aa13.5□□□□□ -0.25
RFFL-203ENST00000413582 IGSF1Q8N6C5 1336 aa13.49□□□□□ -0.25
RFFL-203ENST00000413582 NSD3Q9BZ95 1437 aa13.48□□□□□ -0.25
RFFL-203ENST00000413582 TATP17735 454 aaPredicted RBP13.48□□□□□ -0.25
RFFL-203ENST00000413582 KIAA1551Q9HCM1 1747 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 INSRP06213 1382 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 CYP27B1O15528 508 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 HMGB2P26583 209 aaKnown RBP13.47□□□□□ -0.25
RFFL-203ENST00000413582 MPRIPQ6WCQ1 1025 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 AK7Q96M32 723 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 KIF13BQ9NQT8 1826 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
RFFL-203ENST00000413582 FLT4P35916 1363 aa13.46□□□□□ -0.25
RFFL-203ENST00000413582 KIF3CO14782 793 aa13.46□□□□□ -0.25
RFFL-203ENST00000413582 WWC3Q9ULE0 1092 aa13.46□□□□□ -0.25
RFFL-203ENST00000413582 KIF24Q5T7B8 1368 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 ANKRD26Q9UPS8 1709 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 ST20-MTHFSA0A0A6YYL1 179 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.45□□□□□ -0.26
RFFL-203ENST00000413582 FYB1O15117 783 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 PHF14O94880 888 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 HSP90AB2PQ58FF8 381 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 SMIM5Q71RC9 77 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 SMARCC1Q92922 1105 aaPredicted RBP13.45□□□□□ -0.26
RFFL-203ENST00000413582 GGNBP2Q9H3C7 697 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 TONSLQ96HA7 1378 aa13.45□□□□□ -0.26
RFFL-203ENST00000413582 SSFA2P28290 1259 aa13.44□□□□□ -0.26
RFFL-203ENST00000413582 PXDNLA1KZ92 1463 aa13.43□□□□□ -0.26
RFFL-203ENST00000413582 LINC00116Q8NCU8 138 aa13.43□□□□□ -0.26
RFFL-203ENST00000413582 PIGBQ92521 554 aa13.43□□□□□ -0.26
RFFL-203ENST00000413582 N4BP2Q86UW6 1770 aaPredicted RBP13.43□□□□□ -0.26
RFFL-203ENST00000413582 LOC102724428A0A0B4J2F2 783 aa13.42□□□□□ -0.26
RFFL-203ENST00000413582 SIK1P57059 783 aa13.42□□□□□ -0.26
RFFL-203ENST00000413582 BRCA1P38398 1863 aaKnown RBP13.42□□□□□ -0.26
RFFL-203ENST00000413582 TRIM26Q12899 539 aaPredicted RBP13.41□□□□□ -0.26
RFFL-203ENST00000413582 NKX1-1Q15270 411 aaPredicted RBP13.41□□□□□ -0.26
RFFL-203ENST00000413582 C10orf71Q711Q0 1435 aa13.4□□□□□ -0.26
RFFL-203ENST00000413582 SLC24A1O60721 1099 aa13.4□□□□□ -0.26
RFFL-203ENST00000413582 GNPATO15228 680 aa13.39□□□□□ -0.27
RFFL-203ENST00000413582 ITPK1Q13572 414 aa13.39□□□□□ -0.27
RFFL-203ENST00000413582 EMILIN1Q9Y6C2 1016 aa13.39□□□□□ -0.27
RFFL-203ENST00000413582 KDRP35968 1356 aa13.39□□□□□ -0.27
RFFL-203ENST00000413582 WDR90Q96KV7 1748 aa13.39□□□□□ -0.27
RFFL-203ENST00000413582 ZNF831Q5JPB2 1677 aa13.38□□□□□ -0.27
RFFL-203ENST00000413582 MMP10P09238 476 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms