RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 SULT6B1Q6IMI4 303 aa17.27■□□□□ 0.36
LIMS1-205ENST00000410093 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.36
LIMS1-205ENST00000410093 LRP6O75581 1613 aa17.27■□□□□ 0.36
LIMS1-205ENST00000410093 MAP3K19Q56UN5 1328 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 MSH5O43196 834 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 HTATSF1O43719 755 aaKnown RBP17.26■□□□□ 0.35
LIMS1-205ENST00000410093 BCL2L13Q9BXK5 485 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 KIAA0232Q92628 1395 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 VAMP4O75379 141 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 IGHDP01880 384 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 XPCQ01831 940 aaPredicted RBP17.26■□□□□ 0.35
LIMS1-205ENST00000410093 HDAC1Q13547 482 aaPredicted RBP17.26■□□□□ 0.35
LIMS1-205ENST00000410093 C8orf37Q96NL8 207 aa17.26■□□□□ 0.35
LIMS1-205ENST00000410093 NOB1Q9ULX3 412 aaKnown RBP17.26■□□□□ 0.35
LIMS1-205ENST00000410093 PHRF1Q9P1Y6 1649 aaKnown RBP17.25■□□□□ 0.35
LIMS1-205ENST00000410093 PSME1Q06323 249 aa17.25■□□□□ 0.35
LIMS1-205ENST00000410093 PHF8Q9UPP1 1060 aa17.25■□□□□ 0.35
LIMS1-205ENST00000410093 NOP58Q9Y2X3 529 aaKnown RBP17.25■□□□□ 0.35
LIMS1-205ENST00000410093 IGSF1Q8N6C5 1336 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 ADAMTS2O95450 1211 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 AMPHP49418 695 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 NLRP6P59044 892 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 HSP90AB2PQ58FF8 381 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 GAS2L2Q8NHY3 880 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 MBIPQ9NS73 344 aa17.24■□□□□ 0.35
LIMS1-205ENST00000410093 KRT28Q7Z3Y7 464 aa17.23■□□□□ 0.35
LIMS1-205ENST00000410093 NGLY1Q96IV0 654 aa17.23■□□□□ 0.35
LIMS1-205ENST00000410093 ZBTB47Q9UFB7 747 aaPredicted RBP17.23■□□□□ 0.35
LIMS1-205ENST00000410093 TWISTNBQ3B726 338 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-205ENST00000410093 MRPL50Q8N5N7 158 aaKnown RBP17.22■□□□□ 0.35
LIMS1-205ENST00000410093 API5Q9BZZ5 524 aaKnown RBP17.22■□□□□ 0.35
LIMS1-205ENST00000410093 LAS1LQ9Y4W2 734 aaKnown RBP17.22■□□□□ 0.35
LIMS1-205ENST00000410093 PCDHB15Q9Y5E8 787 aa17.22■□□□□ 0.35
LIMS1-205ENST00000410093 AFF2P51816 1311 aa17.22■□□□□ 0.35
LIMS1-205ENST00000410093 SOS1Q07889 1333 aaPredicted RBP17.22■□□□□ 0.35
LIMS1-205ENST00000410093 KIF1AQ12756 1690 aa17.21■□□□□ 0.35
LIMS1-205ENST00000410093 CHL1O00533 1208 aa17.21■□□□□ 0.35
LIMS1-205ENST00000410093 ITPRIPQ8IWB1 547 aa17.21■□□□□ 0.35
LIMS1-205ENST00000410093 KCNH5Q8NCM2 988 aa17.21■□□□□ 0.35
LIMS1-205ENST00000410093 ABTB2Q8N961 1025 aa17.21■□□□□ 0.34
LIMS1-205ENST00000410093 ZBTB40Q9NUA8 1239 aa17.21■□□□□ 0.34
LIMS1-205ENST00000410093 BABAM1Q9NWV8 329 aa17.21■□□□□ 0.34
LIMS1-205ENST00000410093 RXRBP28702 533 aa17.2■□□□□ 0.34
LIMS1-205ENST00000410093 RTF1Q92541 710 aaKnown RBP17.2■□□□□ 0.34
LIMS1-205ENST00000410093 LTN1O94822 1766 aa17.19■□□□□ 0.34
LIMS1-205ENST00000410093 PXDNQ92626 1479 aa17.19■□□□□ 0.34
LIMS1-205ENST00000410093 LMOD2Q6P5Q4 547 aa17.19■□□□□ 0.34
LIMS1-205ENST00000410093 C8orf34Q49A92 452 aa17.18■□□□□ 0.34
LIMS1-205ENST00000410093 AEBP1Q8IUX7 1158 aa17.18■□□□□ 0.34
LIMS1-205ENST00000410093 TMEM57Q8N5G2 664 aa17.18■□□□□ 0.34
LIMS1-205ENST00000410093 CACNA1FO60840 1977 aa17.18■□□□□ 0.34
LIMS1-205ENST00000410093 HOXC9P31274 260 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 RGS3P49796 1198 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 ABCC4O15439 1325 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 SPATA31A3Q5VYP0 1347 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 CRB1P82279 1406 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 LRRC37A3O60309 1634 aa17.17■□□□□ 0.34
LIMS1-205ENST00000410093 QTRT2Q9H974 415 aaKnown RBP17.16■□□□□ 0.34
LIMS1-205ENST00000410093 TNNQ9UQP3 1299 aa17.16■□□□□ 0.34
LIMS1-205ENST00000410093 PTPRCP08575 1304 aa17.16■□□□□ 0.34
LIMS1-205ENST00000410093 SMC5Q8IY18 1101 aa17.16■□□□□ 0.34
LIMS1-205ENST00000410093 EYA1Q99502 592 aa17.16■□□□□ 0.34
LIMS1-205ENST00000410093 THUMPD2Q9BTF0 503 aaKnown RBP17.16■□□□□ 0.34
LIMS1-205ENST00000410093 NFAT5O94916 1531 aa17.15■□□□□ 0.34
LIMS1-205ENST00000410093 IP6K1Q92551 441 aa17.15■□□□□ 0.34
LIMS1-205ENST00000410093 CHMP4AQ9BY43 222 aa17.15■□□□□ 0.34
LIMS1-205ENST00000410093 USP21Q9UK80 565 aa17.15■□□□□ 0.34
LIMS1-205ENST00000410093 PDZRN3Q9UPQ7 1066 aa17.14■□□□□ 0.33
LIMS1-205ENST00000410093 PAK3O75914 559 aaPredicted RBP17.13■□□□□ 0.33
LIMS1-205ENST00000410093 PLEKHG5O94827 1062 aa17.13■□□□□ 0.33
LIMS1-205ENST00000410093 TSPYL6Q8N831 410 aa17.13■□□□□ 0.33
LIMS1-205ENST00000410093 C8orf58Q8NAV2 365 aa17.13■□□□□ 0.33
LIMS1-205ENST00000410093 GCC1Q96CN9 775 aa17.13■□□□□ 0.33
LIMS1-205ENST00000410093 COL22A1Q8NFW1 1626 aaPredicted RBP17.13■□□□□ 0.33
LIMS1-205ENST00000410093 SLIT3O75094 1523 aa17.13■□□□□ 0.33
LIMS1-205ENST00000410093 TNS3Q68CZ2 1445 aa17.12■□□□□ 0.33
LIMS1-205ENST00000410093 FAM83GA6ND36 823 aa17.12■□□□□ 0.33
LIMS1-205ENST00000410093 ZBTB7BO15156 539 aaPredicted RBP17.12■□□□□ 0.33
LIMS1-205ENST00000410093 RBM6P78332 1123 aaKnown RBP17.12■□□□□ 0.33
LIMS1-205ENST00000410093 MTHFSDQ2M296 383 aaKnown RBP17.12■□□□□ 0.33
LIMS1-205ENST00000410093 TRPC5Q9UL62 973 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-205ENST00000410093 GNAT3A8MTJ3 354 aa17.11■□□□□ 0.33
LIMS1-205ENST00000410093 SOX12O15370 315 aa17.11■□□□□ 0.33
LIMS1-205ENST00000410093 INTS3Q68E01 1043 aaKnown RBP17.11■□□□□ 0.33
LIMS1-205ENST00000410093 FNBP4Q8N3X1 1017 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-205ENST00000410093 TRPM3Q9HCF6 1732 aaPredicted RBP17.11■□□□□ 0.33
LIMS1-205ENST00000410093 EIF5BO60841 1220 aaKnown RBP17.1■□□□□ 0.33
LIMS1-205ENST00000410093 NPM2Q86SE8 214 aaKnown RBP17.1■□□□□ 0.33
LIMS1-205ENST00000410093 UPF2Q9HAU5 1272 aaKnown RBP17.1■□□□□ 0.33
LIMS1-205ENST00000410093 MAP3K5Q99683 1374 aa17.09■□□□□ 0.33
LIMS1-205ENST00000410093 DCTN1Q14203 1278 aa17.09■□□□□ 0.33
LIMS1-205ENST00000410093 MCM10Q7L590 875 aa17.08■□□□□ 0.32
LIMS1-205ENST00000410093 SKAP1Q86WV1 359 aa17.08■□□□□ 0.32
LIMS1-205ENST00000410093 TSPYL4Q9UJ04 414 aa17.08■□□□□ 0.32
LIMS1-205ENST00000410093 CABLES1Q8TDN4 633 aa17.07■□□□□ 0.32
LIMS1-205ENST00000410093 DAXXQ9UER7 740 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-205ENST00000410093 PLEKHG2Q9H7P9 1386 aa17.07■□□□□ 0.32
LIMS1-205ENST00000410093 NUCB1Q02818 461 aa17.06■□□□□ 0.32
LIMS1-205ENST00000410093 NCAPD2Q15021 1401 aa17.06■□□□□ 0.32
LIMS1-205ENST00000410093 OVOS2A0A0G2JMS6 1433 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms