RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RIMBP3BA6NNM3 1639 aa16.59■□□□□ 0.25
VPS54-203ENST00000409558 RIMBP3Q9UFD9 1639 aa16.59■□□□□ 0.25
VPS54-203ENST00000409558 PLEKHM2Q8IWE5 1019 aa16.59■□□□□ 0.25
VPS54-203ENST00000409558 TRAK2O60296 914 aa16.58■□□□□ 0.25
VPS54-203ENST00000409558 PHAXQ9H814 394 aaKnown RBP16.58■□□□□ 0.25
VPS54-203ENST00000409558 CHL1O00533 1208 aa16.58■□□□□ 0.24
VPS54-203ENST00000409558 MPRIPQ6WCQ1 1025 aa16.58■□□□□ 0.24
VPS54-203ENST00000409558 PPP6R1Q9UPN7 881 aa16.58■□□□□ 0.24
VPS54-203ENST00000409558 CEP85Q6P2H3 762 aa16.58■□□□□ 0.24
VPS54-203ENST00000409558 CPSF1Q10570 1443 aaKnown RBP16.58■□□□□ 0.24
VPS54-203ENST00000409558 BMP2KLQ5H9B9 411 aa16.57■□□□□ 0.24
VPS54-203ENST00000409558 LARP6Q9BRS8 491 aaKnown RBP16.57■□□□□ 0.24
VPS54-203ENST00000409558 CDC45O75419 566 aa16.57■□□□□ 0.24
VPS54-203ENST00000409558 CHMP4BQ9H444 224 aaKnown RBP16.57■□□□□ 0.24
VPS54-203ENST00000409558 ABCC4O15439 1325 aa16.56■□□□□ 0.24
VPS54-203ENST00000409558 SDSP20132 328 aa16.56■□□□□ 0.24
VPS54-203ENST00000409558 KCNQ3O43525 872 aa16.56■□□□□ 0.24
VPS54-203ENST00000409558 AIMP1Q12904 312 aaKnown RBP16.56■□□□□ 0.24
VPS54-203ENST00000409558 NUTM1Q86Y26 1132 aa16.56■□□□□ 0.24
VPS54-203ENST00000409558 THEMISQ8N1K5 641 aaPredicted RBP16.56■□□□□ 0.24
VPS54-203ENST00000409558 GAS2L2Q8NHY3 880 aa16.56■□□□□ 0.24
VPS54-203ENST00000409558 SSFA2P28290 1259 aa16.55■□□□□ 0.24
VPS54-203ENST00000409558 LGR6Q9HBX8 967 aa16.55■□□□□ 0.24
VPS54-203ENST00000409558 HDGFL1Q5TGJ6 251 aa16.55■□□□□ 0.24
VPS54-203ENST00000409558 CCDC9Q9Y3X0 531 aaKnown RBP16.55■□□□□ 0.24
VPS54-203ENST00000409558 LRRFIP2Q9Y608 721 aaKnown RBP16.55■□□□□ 0.24
VPS54-203ENST00000409558 ZC3H6P61129 1189 aaKnown RBP16.55■□□□□ 0.24
VPS54-203ENST00000409558 DDX17Q92841 729 aaKnown RBP16.55■□□□□ 0.24
VPS54-203ENST00000409558 ATP7BP35670 1465 aa16.55■□□□□ 0.24
VPS54-203ENST00000409558 PNMA6EA0A0J9YXQ4 647 aa16.54■□□□□ 0.24
VPS54-203ENST00000409558 FLIIQ13045 1269 aa16.54■□□□□ 0.24
VPS54-203ENST00000409558 TNPO1Q92973 898 aaKnown RBP16.54■□□□□ 0.24
VPS54-203ENST00000409558 OS9Q13438 667 aaPredicted RBP16.54■□□□□ 0.24
VPS54-203ENST00000409558 ARHGAP45Q92619 1136 aa16.54■□□□□ 0.24
VPS54-203ENST00000409558 PIP4K2AP48426 406 aaPredicted RBP16.54■□□□□ 0.24
VPS54-203ENST00000409558 DIP2BQ9P265 1576 aa16.54■□□□□ 0.24
VPS54-203ENST00000409558 GNAT3A8MTJ3 354 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 IL17REQ8NFR9 667 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 DDX54Q8TDD1 881 aaKnown RBP16.53■□□□□ 0.24
VPS54-203ENST00000409558 ORAI2Q96SN7 254 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 DCTPP1Q9H773 170 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 ANO2Q9NQ90 1003 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 ADGRB2O60241 1585 aa16.53■□□□□ 0.24
VPS54-203ENST00000409558 GOLGA6L3A6NEY3 463 aa16.52■□□□□ 0.24
VPS54-203ENST00000409558 ANKRD44Q8N8A2 993 aa16.52■□□□□ 0.24
VPS54-203ENST00000409558 HOXC9P31274 260 aa16.52■□□□□ 0.24
VPS54-203ENST00000409558 PLEKHG3A1L390 1219 aa16.52■□□□□ 0.23
VPS54-203ENST00000409558 JARID2Q92833 1246 aaPredicted RBP16.52■□□□□ 0.23
VPS54-203ENST00000409558 PKP1Q13835 747 aa16.51■□□□□ 0.23
VPS54-203ENST00000409558 TTC22Q5TAA0 569 aa16.51■□□□□ 0.23
VPS54-203ENST00000409558 PTPRUQ92729 1446 aa16.51■□□□□ 0.23
VPS54-203ENST00000409558 UPF3BQ9BZI7 483 aaKnown RBP16.51■□□□□ 0.23
VPS54-203ENST00000409558 TEFQ10587 303 aa16.51■□□□□ 0.23
VPS54-203ENST00000409558 SURF6O75683 361 aaKnown RBP16.5■□□□□ 0.23
VPS54-203ENST00000409558 CASC1Q6TDU7 716 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 USP6P35125 1406 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 HMMRO75330 724 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 PHF8Q9UPP1 1060 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 K7ELQ4 463 aaPredicted RBP16.5■□□□□ 0.23
VPS54-203ENST00000409558 GNAI2P04899 355 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 ZGPATQ8N5A5 531 aaKnown RBP16.5■□□□□ 0.23
VPS54-203ENST00000409558 ADAMTS13Q76LX8 1427 aa16.5■□□□□ 0.23
VPS54-203ENST00000409558 NBPF6Q5VWK0 638 aa16.49■□□□□ 0.23
VPS54-203ENST00000409558 MCTP1Q6DN14 999 aa16.49■□□□□ 0.23
VPS54-203ENST00000409558 NBPF4Q96M43 638 aa16.49■□□□□ 0.23
VPS54-203ENST00000409558 KIF2CQ99661 725 aa16.49■□□□□ 0.23
VPS54-203ENST00000409558 INTS3Q68E01 1043 aaKnown RBP16.49■□□□□ 0.23
VPS54-203ENST00000409558 PRAMEF22A3QJZ6 481 aa16.49■□□□□ 0.23
VPS54-203ENST00000409558 ZNF530Q6P9A1 599 aaPredicted RBP16.49■□□□□ 0.23
VPS54-203ENST00000409558 AATKQ6ZMQ8 1374 aa16.48■□□□□ 0.23
VPS54-203ENST00000409558 NEK4P51957 841 aa16.48■□□□□ 0.23
VPS54-203ENST00000409558 CCDC30Q5VVM6 783 aa16.48■□□□□ 0.23
VPS54-203ENST00000409558 USP32Q8NFA0 1604 aa16.48■□□□□ 0.23
VPS54-203ENST00000409558 UBTFL1P0CB47 393 aaPredicted RBP16.48■□□□□ 0.23
VPS54-203ENST00000409558 MED14O60244 1454 aa16.48■□□□□ 0.23
VPS54-203ENST00000409558 CDK12Q9NYV4 1490 aaPredicted RBP16.48■□□□□ 0.23
VPS54-203ENST00000409558 RPAP2Q8IXW5 612 aaPredicted RBP16.48■□□□□ 0.23
VPS54-203ENST00000409558 TAF7Q15545 349 aaPredicted RBP16.47■□□□□ 0.23
VPS54-203ENST00000409558 CHPF2Q9P2E5 772 aa16.47■□□□□ 0.23
VPS54-203ENST00000409558 RTL1A6NKG5 1358 aa16.47■□□□□ 0.23
VPS54-203ENST00000409558 HAP1P54257 671 aaPredicted RBP16.47■□□□□ 0.23
VPS54-203ENST00000409558 NCBP3Q53F19 620 aaKnown RBP16.47■□□□□ 0.23
VPS54-203ENST00000409558 CABLES1Q8TDN4 633 aa16.47■□□□□ 0.23
VPS54-203ENST00000409558 FLT4P35916 1363 aa16.47■□□□□ 0.23
VPS54-203ENST00000409558 DDX49Q9Y6V7 483 aaKnown RBP16.46■□□□□ 0.23
VPS54-203ENST00000409558 PI4KAP2A4QPH2 592 aa16.46■□□□□ 0.23
VPS54-203ENST00000409558 XRCC6P12956 609 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS54-203ENST00000409558 RBM25P49756 843 aaKnown RBP16.46■□□□□ 0.23
VPS54-203ENST00000409558 PI4KAP1Q8N8J0 262 aa16.46■□□□□ 0.23
VPS54-203ENST00000409558 PIK3R4Q99570 1358 aa16.46■□□□□ 0.22
VPS54-203ENST00000409558 SLC39A6Q13433 755 aa16.46■□□□□ 0.22
VPS54-203ENST00000409558 SRGAP3O43295 1099 aa16.45■□□□□ 0.22
VPS54-203ENST00000409558 UNC5CLQ8IV45 518 aa16.45■□□□□ 0.22
VPS54-203ENST00000409558 CSB-PGBD3P0DP91 1061 aa16.45■□□□□ 0.22
VPS54-203ENST00000409558 PDE1AP54750 535 aa16.45■□□□□ 0.22
VPS54-203ENST00000409558 NBPF7P0C2Y1 421 aaPredicted RBP16.44■□□□□ 0.22
VPS54-203ENST00000409558 MYL6BP14649 208 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 LRRCC1Q9C099 1032 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 SIL1Q9H173 461 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 TBX22Q9Y458 520 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms