RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PRDM11Q9NQV5 511 aa18.22■□□□□ 0.51
GPNMB-203ENST00000409458 MBIPQ9NS73 344 aa18.22■□□□□ 0.51
GPNMB-203ENST00000409458 CT47B1P0C2W7 299 aaPredicted RBP18.21■□□□□ 0.51
GPNMB-203ENST00000409458 C20orf194Q5TEA3 1177 aa18.2■□□□□ 0.5
GPNMB-203ENST00000409458 PPP4R2Q9NY27 417 aa18.2■□□□□ 0.5
GPNMB-203ENST00000409458 GNAT3A8MTJ3 354 aa18.19■□□□□ 0.5
GPNMB-203ENST00000409458 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.19■□□□□ 0.5
GPNMB-203ENST00000409458 RTF1Q92541 710 aaKnown RBP18.19■□□□□ 0.5
GPNMB-203ENST00000409458 COL5A2P05997 1499 aaPredicted RBP18.19■□□□□ 0.5
GPNMB-203ENST00000409458 HTATSF1O43719 755 aaKnown RBP18.18■□□□□ 0.5
GPNMB-203ENST00000409458 CSB-PGBD3P0DP91 1061 aa18.18■□□□□ 0.5
GPNMB-203ENST00000409458 NLRP2Q9NX02 1062 aa18.18■□□□□ 0.5
GPNMB-203ENST00000409458 EXOC6Q8TAG9 804 aa18.18■□□□□ 0.5
GPNMB-203ENST00000409458 BCL2L13Q9BXK5 485 aa18.18■□□□□ 0.5
GPNMB-203ENST00000409458 TOM1O60784 492 aa18.17■□□□□ 0.5
GPNMB-203ENST00000409458 MEGF6O75095 1541 aa18.17■□□□□ 0.5
GPNMB-203ENST00000409458 VIRMAQ69YN4 1812 aaKnown RBP18.17■□□□□ 0.5
GPNMB-203ENST00000409458 PIP4K2BP78356 416 aa18.16■□□□□ 0.5
GPNMB-203ENST00000409458 PLEKHO1Q53GL0 409 aaPredicted RBP18.16■□□□□ 0.5
GPNMB-203ENST00000409458 CHL1O00533 1208 aa18.15■□□□□ 0.5
GPNMB-203ENST00000409458 CRBNQ96SW2 442 aa18.15■□□□□ 0.5
GPNMB-203ENST00000409458 AMOTQ4VCS5 1084 aa18.15■□□□□ 0.5
GPNMB-203ENST00000409458 ZNF530Q6P9A1 599 aaPredicted RBP18.15■□□□□ 0.5
GPNMB-203ENST00000409458 PKD1L3Q7Z443 1732 aa18.14■□□□□ 0.5
GPNMB-203ENST00000409458 WDR17Q8IZU2 1322 aa18.14■□□□□ 0.49
GPNMB-203ENST00000409458 COL14A1Q05707 1796 aaKnown RBP18.14■□□□□ 0.49
GPNMB-203ENST00000409458 TSPYL6Q8N831 410 aa18.14■□□□□ 0.49
GPNMB-203ENST00000409458 IL17REQ8NFR9 667 aa18.14■□□□□ 0.49
GPNMB-203ENST00000409458 SSH1Q8WYL5 1049 aa18.13■□□□□ 0.49
GPNMB-203ENST00000409458 CEMIPQ8WUJ3 1361 aa18.13■□□□□ 0.49
GPNMB-203ENST00000409458 AKAP4Q5JQC9 854 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 B4GALNT3Q6L9W6 998 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 C8orf58Q8NAV2 365 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 RAPGEF4Q8WZA2 1011 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 SMC4Q9NTJ3 1288 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 PARP4Q9UKK3 1724 aaKnown RBP18.12■□□□□ 0.49
GPNMB-203ENST00000409458 ADAMTS7Q9UKP4 1686 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 UBAP1LF5GYI3 381 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 VAMP4O75379 141 aa18.12■□□□□ 0.49
GPNMB-203ENST00000409458 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
GPNMB-203ENST00000409458 FRAT1Q92837 279 aaPredicted RBP18.12■□□□□ 0.49
GPNMB-203ENST00000409458 PLEKHG2Q9H7P9 1386 aa18.11■□□□□ 0.49
GPNMB-203ENST00000409458 TATP17735 454 aaPredicted RBP18.11■□□□□ 0.49
GPNMB-203ENST00000409458 TWISTNBQ3B726 338 aaPredicted RBP18.11■□□□□ 0.49
GPNMB-203ENST00000409458 MIS18AQ9NYP9 233 aa18.11■□□□□ 0.49
GPNMB-203ENST00000409458 TSPYL4Q9UJ04 414 aa18.1■□□□□ 0.49
GPNMB-203ENST00000409458 ELL2O00472 640 aaPredicted RBP18.09■□□□□ 0.49
GPNMB-203ENST00000409458 KRT24Q2M2I5 525 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 ALDH1L2Q3SY69 923 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 C1orf141Q5JVX7 400 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 TOM1L2Q6ZVM7 507 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 ZNF428Q96B54 188 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 LGR6Q9HBX8 967 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 PLCH1Q4KWH8 1693 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 OVOS2A0A0G2JMS6 1433 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 KDM3BQ7LBC6 1761 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 STRN4Q9NRL3 753 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 TNNQ9UQP3 1299 aa18.09■□□□□ 0.49
GPNMB-203ENST00000409458 PDE3AQ14432 1141 aa18.08■□□□□ 0.48
GPNMB-203ENST00000409458 SIPA1L3O60292 1781 aaPredicted RBP18.08■□□□□ 0.48
GPNMB-203ENST00000409458 SCN11AQ9UI33 1791 aa18.07■□□□□ 0.48
GPNMB-203ENST00000409458 LARP1Q6PKG0 1096 aaKnown RBP18.07■□□□□ 0.48
GPNMB-203ENST00000409458 MPRIPQ6WCQ1 1025 aa18.07■□□□□ 0.48
GPNMB-203ENST00000409458 PANK1Q8TE04 598 aa18.07■□□□□ 0.48
GPNMB-203ENST00000409458 RNMTO43148 476 aaKnown RBP18.06■□□□□ 0.48
GPNMB-203ENST00000409458 TAF7Q15545 349 aaPredicted RBP18.06■□□□□ 0.48
GPNMB-203ENST00000409458 ZKSCAN2Q63HK3 967 aa18.06■□□□□ 0.48
GPNMB-203ENST00000409458 CCDC136Q96JN2 1154 aa18.06■□□□□ 0.48
GPNMB-203ENST00000409458 CARD10Q9BWT7 1032 aa18.06■□□□□ 0.48
GPNMB-203ENST00000409458 BTG4Q9NY30 223 aa18.06■□□□□ 0.48
GPNMB-203ENST00000409458 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.06■□□□□ 0.48
GPNMB-203ENST00000409458 SPG7Q9UQ90 795 aa18.06■□□□□ 0.48
GPNMB-203ENST00000409458 SHANK3Q9BYB0 1731 aa18.05■□□□□ 0.48
GPNMB-203ENST00000409458 KDM6AO15550 1401 aaPredicted RBP18.05■□□□□ 0.48
GPNMB-203ENST00000409458 KIF16BQ96L93 1317 aa18.05■□□□□ 0.48
GPNMB-203ENST00000409458 RLBP1P12271 317 aa18.05■□□□□ 0.48
GPNMB-203ENST00000409458 EVA1CP58658 441 aa18.05■□□□□ 0.48
GPNMB-203ENST00000409458 MRPL50Q8N5N7 158 aaKnown RBP18.05■□□□□ 0.48
GPNMB-203ENST00000409458 BABAM1Q9NWV8 329 aa18.05■□□□□ 0.48
GPNMB-203ENST00000409458 NOB1Q9ULX3 412 aaKnown RBP18.05■□□□□ 0.48
GPNMB-203ENST00000409458 NRAPQ86VF7 1730 aa18.04■□□□□ 0.48
GPNMB-203ENST00000409458 PHKG2P15735 406 aa18.04■□□□□ 0.48
GPNMB-203ENST00000409458 BRPF1P55201 1214 aaPredicted RBP18.04■□□□□ 0.48
GPNMB-203ENST00000409458 CERKQ8TCT0 537 aa18.04■□□□□ 0.48
GPNMB-203ENST00000409458 TCERG1O14776 1098 aaKnown RBP18.03■□□□□ 0.48
GPNMB-203ENST00000409458 TRIM27P14373 513 aa18.03■□□□□ 0.48
GPNMB-203ENST00000409458 CLUAP1Q96AJ1 413 aa18.03■□□□□ 0.48
GPNMB-203ENST00000409458 COG6Q9Y2V7 657 aa18.03■□□□□ 0.48
GPNMB-203ENST00000409458 TEFQ10587 303 aa18.02■□□□□ 0.47
GPNMB-203ENST00000409458 ATF7IPQ6VMQ6 1270 aa18.02■□□□□ 0.47
GPNMB-203ENST00000409458 WNK3Q9BYP7 1800 aa18.01■□□□□ 0.47
GPNMB-203ENST00000409458 CYP27B1O15528 508 aa18.01■□□□□ 0.47
GPNMB-203ENST00000409458 ADAMTS2O95450 1211 aa18.01■□□□□ 0.47
GPNMB-203ENST00000409458 IFNL2Q8IZJ0 200 aa18.01■□□□□ 0.47
GPNMB-203ENST00000409458 MRC1P22897 1456 aa18.01■□□□□ 0.47
GPNMB-203ENST00000409458 IL2RBP14784 551 aa18■□□□□ 0.47
GPNMB-203ENST00000409458 DZIP1LQ8IYY4 767 aaKnown RBP18■□□□□ 0.47
GPNMB-203ENST00000409458 FTSJ3Q8IY81 847 aaKnown RBP17.99■□□□□ 0.47
GPNMB-203ENST00000409458 NUTM2BA6NNL0 878 aaPredicted RBP17.99■□□□□ 0.47
GPNMB-203ENST00000409458 NUTM2EB1AL46 878 aaPredicted RBP17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms