RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 PDE4CQ08493 712 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 LINC01559Q495D7 138 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 SLFNL1Q499Z3 407 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 IFFO2Q5TF58 517 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 BPHLQ86WA6 291 aaPredicted RBP8.11□□□□□ -1.11
CLK1-202ENST00000409403 ZNF511Q8NB15 262 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 CARD14Q9BXL6 1004 aa8.11□□□□□ -1.11
CLK1-202ENST00000409403 MAGEB6P1A0A0J9YX57 407 aa8.1□□□□□ -1.11
CLK1-202ENST00000409403 SKIP12755 728 aa8.1□□□□□ -1.11
CLK1-202ENST00000409403 AGERQ15109 404 aa8.1□□□□□ -1.11
CLK1-202ENST00000409403 PTPRTO14522 1441 aa8.1□□□□□ -1.11
CLK1-202ENST00000409403 ABCA10Q8WWZ4 1543 aa8.1□□□□□ -1.11
CLK1-202ENST00000409403 DZIP3Q86Y13 1208 aaKnown RBP8.09□□□□□ -1.11
CLK1-202ENST00000409403 FAM174AQ8TBP5 190 aa8.09□□□□□ -1.11
CLK1-202ENST00000409403 SIGLEC1Q9BZZ2 1709 aa8.09□□□□□ -1.11
CLK1-202ENST00000409403 ZCCHC11Q5TAX3 1644 aaKnown RBP8.09□□□□□ -1.11
CLK1-202ENST00000409403 USP17L5A8MUK1 530 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 GGCXP38435 758 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 RNF135Q8IUD6 432 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 FOXJ1Q92949 421 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 FHAD1B1AJZ9 1412 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 USP17L3A6NCW0 530 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 USP17L4A6NCW7 530 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 RNF223E7ERA6 249 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 PPEF1O14829 653 aaPredicted RBP8.08□□□□□ -1.12
CLK1-202ENST00000409403 ZBTB24O43167 697 aaPredicted RBP8.08□□□□□ -1.12
CLK1-202ENST00000409403 ATG7O95352 703 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 CSB-PGBD3P0DP91 1061 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 NEUROD1Q13562 356 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 USP17L2Q6R6M4 530 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 USP17L1Q7RTZ2 530 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 PLEKHM2Q8IWE5 1019 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 VRTNQ9H8Y1 702 aa8.08□□□□□ -1.12
CLK1-202ENST00000409403 ERFEQ4G0M1 354 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 CDCA8Q53HL2 280 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 PHTF2Q8N3S3 785 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 ANKLE1Q8NAG6 615 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 USTQ9Y2C2 406 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 TTC37Q6PGP7 1564 aa8.07□□□□□ -1.12
CLK1-202ENST00000409403 A0A0G2JS52 829 aa8.06□□□□□ -1.12
CLK1-202ENST00000409403 C4orf48Q5BLP8 95 aa8.06□□□□□ -1.12
CLK1-202ENST00000409403 KANK4Q5T7N3 995 aaPredicted RBP8.06□□□□□ -1.12
CLK1-202ENST00000409403 RGS17Q9UGC6 210 aaPredicted RBP8.06□□□□□ -1.12
CLK1-202ENST00000409403 SRCAPQ6ZRS2 3230 aa8.06□□□□□ -1.12
CLK1-202ENST00000409403 ZBTB7CA1YPR0 619 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 SH3BP2P78314 561 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 DEPDC4Q8N2C3 294 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 KCTD17Q8N5Z5 321 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 PLPP7Q8NBV4 271 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 SLC10A4Q96EP9 437 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 MAGI3Q5TCQ9 1506 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 ARID4BQ4LE39 1312 aaPredicted RBP8.05□□□□□ -1.12
CLK1-202ENST00000409403 LZTS3O60299 673 aaPredicted RBP8.05□□□□□ -1.12
CLK1-202ENST00000409403 TRIM32Q13049 653 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 MAP7D1Q3KQU3 841 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 C1QTNF2Q9BXJ5 285 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 BCL11AQ9H165 835 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 PODXL2Q9NZ53 605 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 CHIC2Q9UKJ5 165 aa8.05□□□□□ -1.12
CLK1-202ENST00000409403 FRMPD1Q5SYB0 1578 aa8.04□□□□□ -1.12
CLK1-202ENST00000409403 NCOA4Q13772 614 aa8.04□□□□□ -1.12
CLK1-202ENST00000409403 CLSPNQ9HAW4 1339 aa8.04□□□□□ -1.12
CLK1-202ENST00000409403 NBPF20Q3BBV1 942 aa8.03□□□□□ -1.12
CLK1-202ENST00000409403 PLA2G2CQ5R387 149 aa8.03□□□□□ -1.12
CLK1-202ENST00000409403 TRMT44Q8IYL2 757 aaKnown RBP8.03□□□□□ -1.12
CLK1-202ENST00000409403 MKRN1Q9UHC7 482 aaKnown RBP8.03□□□□□ -1.12
CLK1-202ENST00000409403 CDV3Q9UKY7 258 aaKnown RBP8.03□□□□□ -1.12
CLK1-202ENST00000409403 ARHGEF40Q8TER5 1519 aa8.03□□□□□ -1.12
CLK1-202ENST00000409403 GIGYF1O75420 1035 aaPredicted RBP8.02□□□□□ -1.13
CLK1-202ENST00000409403 WNT7BP56706 349 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 RNF20Q5VTR2 975 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 PPP1R18Q6NYC8 613 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.02□□□□□ -1.13
CLK1-202ENST00000409403 ARAP3Q8WWN8 1544 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 ATP5J2-PTCD1G3V325 749 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 RGS20O76081 388 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 ELOAQ14241 798 aaKnown RBP8.02□□□□□ -1.13
CLK1-202ENST00000409403 EML3Q32P44 896 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 TRAF7Q6Q0C0 670 aa8.02□□□□□ -1.13
CLK1-202ENST00000409403 FAM196BA6NMK8 535 aa8.01□□□□□ -1.13
CLK1-202ENST00000409403 RPIAP49247 311 aa8.01□□□□□ -1.13
CLK1-202ENST00000409403 AEBP1Q8IUX7 1158 aa8.01□□□□□ -1.13
CLK1-202ENST00000409403 DOLKQ9UPQ8 538 aa8.01□□□□□ -1.13
CLK1-202ENST00000409403 VARSP26640 1264 aaKnown RBP8□□□□□ -1.13
CLK1-202ENST00000409403 PIP4K2BP78356 416 aa8□□□□□ -1.13
CLK1-202ENST00000409403 CCDC85AQ96PX6 553 aaPredicted RBP8□□□□□ -1.13
CLK1-202ENST00000409403 PTPRGP23470 1445 aa8□□□□□ -1.13
CLK1-202ENST00000409403 CD109Q6YHK3 1445 aa8□□□□□ -1.13
CLK1-202ENST00000409403 UHRF1BP1LA0JNW5 1464 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 ESPNB1AK53 854 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 RASA1P20936 1047 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 SKOR1P84550 965 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 TSGA10IPQ3SY00 556 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 LARP1Q6PKG0 1096 aaKnown RBP7.99□□□□□ -1.13
CLK1-202ENST00000409403 CCDC125Q86Z20 511 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 SEPT12Q8IYM1 358 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 WDR7Q9Y4E6 1490 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 KDM5BQ9UGL1 1544 aa7.99□□□□□ -1.13
CLK1-202ENST00000409403 TMEM88BA6NKF7 163 aa7.98□□□□□ -1.13
CLK1-202ENST00000409403 CD2BP2O95400 341 aaKnown RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms