RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 IP6K1Q92551 441 aa23.77■■□□□ 1.4
CHMP3-203ENST00000409225 SLC12A5Q9H2X9 1139 aa23.77■■□□□ 1.4
CHMP3-203ENST00000409225 EDC4Q6P2E9 1401 aaKnown RBP23.76■■□□□ 1.39
CHMP3-203ENST00000409225 CCNL1Q9UK58 526 aaPredicted RBP23.76■■□□□ 1.39
CHMP3-203ENST00000409225 NSD2O96028 1365 aa23.76■■□□□ 1.39
CHMP3-203ENST00000409225 NEUROD1Q13562 356 aa23.75■■□□□ 1.39
CHMP3-203ENST00000409225 LY75O60449 1722 aa23.75■■□□□ 1.39
CHMP3-203ENST00000409225 FAM208AQ9UK61 1670 aaKnown RBP23.74■■□□□ 1.39
CHMP3-203ENST00000409225 MSL1Q68DK7 614 aa23.74■■□□□ 1.39
CHMP3-203ENST00000409225 CEP350Q5VT06 3117 aa23.74■■□□□ 1.39
CHMP3-203ENST00000409225 COL23A1Q86Y22 540 aaPredicted RBP23.73■■□□□ 1.39
CHMP3-203ENST00000409225 ATP10DQ9P241 1426 aa23.73■■□□□ 1.39
CHMP3-203ENST00000409225 TERF2IPQ9NYB0 399 aa23.72■■□□□ 1.39
CHMP3-203ENST00000409225 A0A1W2PP64 1363 aa23.72■■□□□ 1.39
CHMP3-203ENST00000409225 ZCRB1Q8TBF4 217 aaKnown RBP23.71■■□□□ 1.39
CHMP3-203ENST00000409225 USP47Q96K76 1375 aa23.68■■□□□ 1.38
CHMP3-203ENST00000409225 CARD11Q9BXL7 1154 aa23.68■■□□□ 1.38
CHMP3-203ENST00000409225 MEGF6O75095 1541 aa23.68■■□□□ 1.38
CHMP3-203ENST00000409225 MAP3K19Q56UN5 1328 aa23.67■■□□□ 1.38
CHMP3-203ENST00000409225 HOXC9P31274 260 aa23.67■■□□□ 1.38
CHMP3-203ENST00000409225 AMPHP49418 695 aa23.67■■□□□ 1.38
CHMP3-203ENST00000409225 GPBP1L1Q9HC44 474 aaPredicted RBP23.67■■□□□ 1.38
CHMP3-203ENST00000409225 RGPD2P0DJD1 1756 aa23.66■■□□□ 1.38
CHMP3-203ENST00000409225 FBLN1P23142 703 aa23.66■■□□□ 1.38
CHMP3-203ENST00000409225 COG3Q96JB2 828 aa23.65■■□□□ 1.38
CHMP3-203ENST00000409225 ZNF526Q8TF50 670 aaPredicted RBP23.64■■□□□ 1.37
CHMP3-203ENST00000409225 CD2APQ9Y5K6 639 aa23.64■■□□□ 1.37
CHMP3-203ENST00000409225 C5P01031 1676 aa23.61■■□□□ 1.37
CHMP3-203ENST00000409225 HSPA6P17066 643 aa23.61■■□□□ 1.37
CHMP3-203ENST00000409225 USHBP1Q8N6Y0 703 aa23.61■■□□□ 1.37
CHMP3-203ENST00000409225 ADCY9O60503 1353 aa23.6■■□□□ 1.37
CHMP3-203ENST00000409225 NBPF6Q5VWK0 638 aa23.59■■□□□ 1.37
CHMP3-203ENST00000409225 NBPF4Q96M43 638 aa23.59■■□□□ 1.37
CHMP3-203ENST00000409225 WWC3Q9ULE0 1092 aa23.59■■□□□ 1.37
CHMP3-203ENST00000409225 FLAD1Q8NFF5 587 aa23.58■■□□□ 1.37
CHMP3-203ENST00000409225 RAPGEF4Q8WZA2 1011 aa23.58■■□□□ 1.37
CHMP3-203ENST00000409225 PALLDQ8WX93 1383 aa23.57■■□□□ 1.36
CHMP3-203ENST00000409225 RRS1Q15050 365 aaKnown RBP23.57■■□□□ 1.36
CHMP3-203ENST00000409225 PUS7Q96PZ0 661 aaKnown RBP23.57■■□□□ 1.36
CHMP3-203ENST00000409225 CGNL1Q0VF96 1302 aa23.57■■□□□ 1.36
CHMP3-203ENST00000409225 RTL1A6NKG5 1358 aa23.55■■□□□ 1.36
CHMP3-203ENST00000409225 TATP17735 454 aaPredicted RBP23.55■■□□□ 1.36
CHMP3-203ENST00000409225 IGSF1Q8N6C5 1336 aa23.55■■□□□ 1.36
CHMP3-203ENST00000409225 MPRIPQ6WCQ1 1025 aa23.54■■□□□ 1.36
CHMP3-203ENST00000409225 TAF1LQ8IZX4 1826 aa23.54■■□□□ 1.36
CHMP3-203ENST00000409225 SMG6Q86US8 1419 aaKnown RBP23.53■■□□□ 1.36
CHMP3-203ENST00000409225 AK7Q96M32 723 aa23.53■■□□□ 1.36
CHMP3-203ENST00000409225 PCDH11XQ9BZA7 1347 aa23.53■■□□□ 1.36
CHMP3-203ENST00000409225 PCDH11YQ9BZA8 1340 aa23.53■■□□□ 1.36
CHMP3-203ENST00000409225 PHF14O94880 888 aa23.52■■□□□ 1.36
CHMP3-203ENST00000409225 HMGB2P26583 209 aaKnown RBP23.52■■□□□ 1.36
CHMP3-203ENST00000409225 SMIM5Q71RC9 77 aa23.52■■□□□ 1.36
CHMP3-203ENST00000409225 AMIGO3Q86WK7 504 aa23.52■■□□□ 1.36
CHMP3-203ENST00000409225 C4BP0C0L5 1744 aa23.51■■□□□ 1.35
CHMP3-203ENST00000409225 TOGARAM1Q9Y4F4 1720 aa23.48■■□□□ 1.35
CHMP3-203ENST00000409225 SMARCC1Q92922 1105 aaPredicted RBP23.48■■□□□ 1.35
CHMP3-203ENST00000409225 GGNBP2Q9H3C7 697 aa23.48■■□□□ 1.35
CHMP3-203ENST00000409225 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.47■■□□□ 1.35
CHMP3-203ENST00000409225 CYP27B1O15528 508 aa23.47■■□□□ 1.35
CHMP3-203ENST00000409225 TESK2Q96S53 571 aa23.47■■□□□ 1.35
CHMP3-203ENST00000409225 KIF3CO14782 793 aa23.46■■□□□ 1.35
CHMP3-203ENST00000409225 HSP90AB2PQ58FF8 381 aa23.46■■□□□ 1.35
CHMP3-203ENST00000409225 UBR3Q6ZT12 1888 aa23.45■■□□□ 1.35
CHMP3-203ENST00000409225 NSD3Q9BZ95 1437 aa23.45■■□□□ 1.34
CHMP3-203ENST00000409225 ST20-MTHFSA0A0A6YYL1 179 aa23.45■■□□□ 1.34
CHMP3-203ENST00000409225 FYB1O15117 783 aa23.45■■□□□ 1.34
CHMP3-203ENST00000409225 ITGB4P16144 1822 aa23.44■■□□□ 1.34
CHMP3-203ENST00000409225 INSRP06213 1382 aa23.43■■□□□ 1.34
CHMP3-203ENST00000409225 PIGBQ92521 554 aa23.43■■□□□ 1.34
CHMP3-203ENST00000409225 SSFA2P28290 1259 aa23.42■■□□□ 1.34
CHMP3-203ENST00000409225 LINC00116Q8NCU8 138 aa23.42■■□□□ 1.34
CHMP3-203ENST00000409225 TONSLQ96HA7 1378 aa23.41■■□□□ 1.34
CHMP3-203ENST00000409225 FLT4P35916 1363 aa23.4■■□□□ 1.34
CHMP3-203ENST00000409225 LOC102724428A0A0B4J2F2 783 aa23.39■■□□□ 1.33
CHMP3-203ENST00000409225 APLP1P51693 650 aa23.39■■□□□ 1.33
CHMP3-203ENST00000409225 SIK1P57059 783 aa23.39■■□□□ 1.33
CHMP3-203ENST00000409225 CICQ96RK0 1608 aaPredicted RBP23.38■■□□□ 1.33
CHMP3-203ENST00000409225 GNPATO15228 680 aa23.38■■□□□ 1.33
CHMP3-203ENST00000409225 PKD1L3Q7Z443 1732 aa23.37■■□□□ 1.33
CHMP3-203ENST00000409225 MAP2P11137 1827 aaKnown RBP23.36■■□□□ 1.33
CHMP3-203ENST00000409225 SLC24A1O60721 1099 aa23.36■■□□□ 1.33
CHMP3-203ENST00000409225 MMP10P09238 476 aa23.36■■□□□ 1.33
CHMP3-203ENST00000409225 ITPK1Q13572 414 aa23.35■■□□□ 1.33
CHMP3-203ENST00000409225 NKX1-1Q15270 411 aaPredicted RBP23.35■■□□□ 1.33
CHMP3-203ENST00000409225 PXDNLA1KZ92 1463 aa23.35■■□□□ 1.33
CHMP3-203ENST00000409225 KIF20BQ96Q89 1820 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 ATP6V1AP38606 617 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 TMOD3Q9NYL9 352 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 ASAP1Q9ULH1 1129 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 SPG7Q9UQ90 795 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 BCS1LQ9Y276 419 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 EMILIN1Q9Y6C2 1016 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 KIF24Q5T7B8 1368 aa23.34■■□□□ 1.33
CHMP3-203ENST00000409225 TOMM70O94826 608 aa23.33■■□□□ 1.33
CHMP3-203ENST00000409225 A0A0G2JLW4 131 aa23.31■■□□□ 1.32
CHMP3-203ENST00000409225 DNAJC5GQ8N7S2 189 aa23.31■■□□□ 1.32
CHMP3-203ENST00000409225 N4BP2Q86UW6 1770 aaPredicted RBP23.31■■□□□ 1.32
CHMP3-203ENST00000409225 PPM1GO15355 546 aaPredicted RBP23.3■■□□□ 1.32
CHMP3-203ENST00000409225 TMF1P82094 1093 aa23.3■■□□□ 1.32
CHMP3-203ENST00000409225 ARHGAP27Q6ZUM4 889 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms