RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 PRKAR2BP31323 418 aa27.52■■■□□ 2
TPM1-208ENST00000404484 THRAP3Q9Y2W1 955 aaKnown RBP27.52■■■□□ 2
TPM1-208ENST00000404484 RGPD5Q99666 1765 aa27.52■■■□□ 2
TPM1-208ENST00000404484 RGPD1P0DJD0 1748 aa27.52■■■□□ 2
TPM1-208ENST00000404484 WWC1Q8IX03 1113 aa27.52■■■□□ 2
TPM1-208ENST00000404484 IP6K1Q92551 441 aa27.52■■■□□ 2
TPM1-208ENST00000404484 BRWD3Q6RI45 1802 aa27.51■■□□□ 1.99
TPM1-208ENST00000404484 HMOX1P09601 288 aa27.5■■□□□ 1.99
TPM1-208ENST00000404484 CDCA7LQ96GN5 454 aa27.5■■□□□ 1.99
TPM1-208ENST00000404484 E9PSI1 815 aa27.49■■□□□ 1.99
TPM1-208ENST00000404484 TMPOP42166 694 aaKnown RBP27.49■■□□□ 1.99
TPM1-208ENST00000404484 WDR63Q8IWG1 891 aa27.49■■□□□ 1.99
TPM1-208ENST00000404484 ABCC6O95255 1503 aa27.49■■□□□ 1.99
TPM1-208ENST00000404484 NEUROD2Q15784 382 aa27.48■■□□□ 1.99
TPM1-208ENST00000404484 RRP7AQ9Y3A4 280 aaKnown RBP27.48■■□□□ 1.99
TPM1-208ENST00000404484 SUPT16HQ9Y5B9 1047 aaKnown RBP27.48■■□□□ 1.99
TPM1-208ENST00000404484 ANKRD24Q8TF21 1146 aa27.48■■□□□ 1.99
TPM1-208ENST00000404484 CARD10Q9BWT7 1032 aa27.48■■□□□ 1.99
TPM1-208ENST00000404484 ERBB3P21860 1342 aa27.47■■□□□ 1.99
TPM1-208ENST00000404484 SLFN5Q08AF3 891 aa27.47■■□□□ 1.99
TPM1-208ENST00000404484 THSD7AQ9UPZ6 1657 aa27.46■■□□□ 1.99
TPM1-208ENST00000404484 FAM182BQ5T319 152 aa27.45■■□□□ 1.99
TPM1-208ENST00000404484 SULT6B1Q6IMI4 303 aa27.44■■□□□ 1.98
TPM1-208ENST00000404484 IGSF1Q8N6C5 1336 aa27.44■■□□□ 1.98
TPM1-208ENST00000404484 NFE2L2Q16236 605 aa27.43■■□□□ 1.98
TPM1-208ENST00000404484 LTV1Q96GA3 475 aaPredicted RBP27.43■■□□□ 1.98
TPM1-208ENST00000404484 NLRP2Q9NX02 1062 aa27.43■■□□□ 1.98
TPM1-208ENST00000404484 DUSP27Q5VZP5 1158 aa27.43■■□□□ 1.98
TPM1-208ENST00000404484 TRMT2AQ8IZ69 625 aaKnown RBP27.43■■□□□ 1.98
TPM1-208ENST00000404484 KDRP35968 1356 aa27.42■■□□□ 1.98
TPM1-208ENST00000404484 RIPK4P57078 832 aa27.42■■□□□ 1.98
TPM1-208ENST00000404484 LMOD3Q0VAK6 560 aa27.4■■□□□ 1.98
TPM1-208ENST00000404484 EYA1Q99502 592 aa27.39■■□□□ 1.98
TPM1-208ENST00000404484 RCAN3Q9UKA8 241 aa27.39■■□□□ 1.97
TPM1-208ENST00000404484 IL16Q14005 1332 aa27.38■■□□□ 1.97
TPM1-208ENST00000404484 AEBP1Q8IUX7 1158 aa27.38■■□□□ 1.97
TPM1-208ENST00000404484 PHACTR3Q96KR7 559 aa27.38■■□□□ 1.97
TPM1-208ENST00000404484 CDCA7Q9BWT1 371 aaPredicted RBP27.37■■□□□ 1.97
TPM1-208ENST00000404484 TRIM35Q9UPQ4 493 aa27.37■■□□□ 1.97
TPM1-208ENST00000404484 CALD1Q05682 793 aaKnown RBP27.36■■□□□ 1.97
TPM1-208ENST00000404484 CCDC125Q86Z20 511 aa27.36■■□□□ 1.97
TPM1-208ENST00000404484 MYH16Q9H6N6 1097 aa27.36■■□□□ 1.97
TPM1-208ENST00000404484 RNF123Q5XPI4 1314 aa27.35■■□□□ 1.97
TPM1-208ENST00000404484 DDB1Q16531 1140 aa27.35■■□□□ 1.97
TPM1-208ENST00000404484 FKBP8Q14318 412 aa27.34■■□□□ 1.97
TPM1-208ENST00000404484 SPINK5Q9NQ38 1064 aaPredicted RBP27.34■■□□□ 1.97
TPM1-208ENST00000404484 DISP2A7MBM2 1401 aa27.33■■□□□ 1.97
TPM1-208ENST00000404484 FAM196AQ6ZSG2 479 aa27.32■■□□□ 1.96
TPM1-208ENST00000404484 PARP4Q9UKK3 1724 aaKnown RBP27.31■■□□□ 1.96
TPM1-208ENST00000404484 NBPF6Q5VWK0 638 aa27.31■■□□□ 1.96
TPM1-208ENST00000404484 NBPF4Q96M43 638 aa27.31■■□□□ 1.96
TPM1-208ENST00000404484 EXOC5O00471 708 aa27.3■■□□□ 1.96
TPM1-208ENST00000404484 IL2RBP14784 551 aa27.3■■□□□ 1.96
TPM1-208ENST00000404484 ERICH6BQ5W0A0 696 aa27.29■■□□□ 1.96
TPM1-208ENST00000404484 GAS2L2Q8NHY3 880 aa27.28■■□□□ 1.96
TPM1-208ENST00000404484 DLG5Q8TDM6 1919 aa27.28■■□□□ 1.96
TPM1-208ENST00000404484 MARCH10Q8NA82 808 aaPredicted RBP27.27■■□□□ 1.96
TPM1-208ENST00000404484 NCAPD2Q15021 1401 aa27.26■■□□□ 1.95
TPM1-208ENST00000404484 SF3B2Q13435 895 aaKnown RBP27.26■■□□□ 1.95
TPM1-208ENST00000404484 LRRC37A3O60309 1634 aa27.25■■□□□ 1.95
TPM1-208ENST00000404484 TRIM37O94972 964 aa27.25■■□□□ 1.95
TPM1-208ENST00000404484 DEFB132Q7Z7B7 95 aa27.25■■□□□ 1.95
TPM1-208ENST00000404484 USHBP1Q8N6Y0 703 aa27.25■■□□□ 1.95
TPM1-208ENST00000404484 RRP1P56182 461 aaKnown RBP27.24■■□□□ 1.95
TPM1-208ENST00000404484 WNK3Q9BYP7 1800 aa27.24■■□□□ 1.95
TPM1-208ENST00000404484 FAM208AQ9UK61 1670 aaKnown RBP27.24■■□□□ 1.95
TPM1-208ENST00000404484 RGPD2P0DJD1 1756 aa27.23■■□□□ 1.95
TPM1-208ENST00000404484 CT47B1P0C2W7 299 aaPredicted RBP27.22■■□□□ 1.95
TPM1-208ENST00000404484 FANCIQ9NVI1 1328 aa27.21■■□□□ 1.95
TPM1-208ENST00000404484 GNAI1P63096 354 aa27.21■■□□□ 1.95
TPM1-208ENST00000404484 IFT57Q9NWB7 429 aa27.21■■□□□ 1.95
TPM1-208ENST00000404484 HTATSF1O43719 755 aaKnown RBP27.2■■□□□ 1.94
TPM1-208ENST00000404484 MTHFSDQ2M296 383 aaKnown RBP27.2■■□□□ 1.94
TPM1-208ENST00000404484 OVOS2A0A0G2JMS6 1433 aa27.19■■□□□ 1.94
TPM1-208ENST00000404484 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.18■■□□□ 1.94
TPM1-208ENST00000404484 RTF1Q92541 710 aaKnown RBP27.18■■□□□ 1.94
TPM1-208ENST00000404484 TNS2Q63HR2 1409 aa27.18■■□□□ 1.94
TPM1-208ENST00000404484 BAG6P46379 1132 aa27.16■■□□□ 1.94
TPM1-208ENST00000404484 PLEKHG2Q9H7P9 1386 aa27.16■■□□□ 1.94
TPM1-208ENST00000404484 IRX6P78412 446 aaPredicted RBP27.15■■□□□ 1.94
TPM1-208ENST00000404484 AMOTQ4VCS5 1084 aa27.15■■□□□ 1.94
TPM1-208ENST00000404484 MEGF6O75095 1541 aa27.15■■□□□ 1.94
TPM1-208ENST00000404484 EN1Q05925 392 aaPredicted RBP27.14■■□□□ 1.94
TPM1-208ENST00000404484 DDX54Q8TDD1 881 aaKnown RBP27.14■■□□□ 1.94
TPM1-208ENST00000404484 RAPGEF4Q8WZA2 1011 aa27.14■■□□□ 1.94
TPM1-208ENST00000404484 TSR2Q969E8 191 aaKnown RBP27.14■■□□□ 1.94
TPM1-208ENST00000404484 CFAP44Q96MT7 982 aa27.14■■□□□ 1.94
TPM1-208ENST00000404484 MAP3K5Q99683 1374 aa27.14■■□□□ 1.93
TPM1-208ENST00000404484 APBA3O96018 575 aa27.14■■□□□ 1.93
TPM1-208ENST00000404484 ZNF853P0CG23 659 aa27.14■■□□□ 1.93
TPM1-208ENST00000404484 PLEKHO1Q53GL0 409 aaPredicted RBP27.14■■□□□ 1.93
TPM1-208ENST00000404484 PTF1AQ7RTS3 328 aa27.14■■□□□ 1.93
TPM1-208ENST00000404484 ZCRB1Q8TBF4 217 aaKnown RBP27.14■■□□□ 1.93
TPM1-208ENST00000404484 THUMPD2Q9BTF0 503 aaKnown RBP27.14■■□□□ 1.93
TPM1-208ENST00000404484 BCL9O00512 1426 aa27.13■■□□□ 1.93
TPM1-208ENST00000404484 GNAT3A8MTJ3 354 aa27.13■■□□□ 1.93
TPM1-208ENST00000404484 TATP17735 454 aaPredicted RBP27.12■■□□□ 1.93
TPM1-208ENST00000404484 LAS1LQ9Y4W2 734 aaKnown RBP27.12■■□□□ 1.93
TPM1-208ENST00000404484 EXOSC9Q06265 439 aaKnown RBP27.1■■□□□ 1.93
TPM1-208ENST00000404484 DCTN1Q14203 1278 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms