RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 ZNF594Q96JF6 807 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 TOR4AQ9NXH8 423 aa9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 NOVA2Q9UNW9 492 aaKnown RBP9.27□□□□□ -0.93
HMGB3P19-201ENST00000403971 FAM196BA6NMK8 535 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZBTB7BO15156 539 aaPredicted RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 ERVK-9P63128 1117 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 DHX9Q08211 1270 aaKnown RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 CCDC125Q86Z20 511 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 STK32AQ8WU08 396 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 DNAAF2Q9NVR5 837 aaKnown RBP9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 PCDHGA11Q9Y5H2 935 aa9.26□□□□□ -0.93
HMGB3P19-201ENST00000403971 LILRA1O75019 489 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 MYCP01106 439 aaPredicted RBP9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 CSB-PGBD3P0DP91 1061 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 CC2D2BQ6DHV5 1058 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 TRIM50Q86XT4 487 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 OSBPL3Q9H4L5 887 aa9.25□□□□□ -0.93
HMGB3P19-201ENST00000403971 STAU1O95793 577 aaKnown RBP9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 SMPD1P17405 629 aa9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 ADD1P35611 737 aaKnown RBP9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 SIRT1Q96EB6 747 aa9.24□□□□□ -0.93
HMGB3P19-201ENST00000403971 DKK1O94907 266 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 PDIA4P13667 645 aaKnown RBP9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ATP1A2P50993 1020 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 MYT1Q01538 1121 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 PSME1Q06323 249 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 DPYDQ12882 1025 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ELOAQ14241 798 aaKnown RBP9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 TMEM164Q5U3C3 297 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 ANKMY2Q8IV38 441 aa9.23□□□□□ -0.93
HMGB3P19-201ENST00000403971 TMEM88BA6NKF7 163 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20EP86478 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20CP86479 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20DP86480 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20BP86481 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 PRR20AP86496 221 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 LARGE2Q8N3Y3 721 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 TPCN2Q8NHX9 752 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ITPKCQ96DU7 683 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZFAND3Q9H8U3 227 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 EMILIN1Q9Y6C2 1016 aa9.22□□□□□ -0.93
HMGB3P19-201ENST00000403971 ZIC2O95409 532 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 CBLBQ13191 982 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 CCDC102BQ68D86 513 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 HPS1Q92902 700 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 KLF16Q9BXK1 252 aaPredicted RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 ESF1Q9H501 851 aaKnown RBP9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 PGPEP1Q9NXJ5 209 aa9.21□□□□□ -0.94
HMGB3P19-201ENST00000403971 SFI1A8K8P3 1242 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 WDR4P57081 412 aaKnown RBP9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 SIX5Q8N196 739 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM200AQ8TCP9 573 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 PDZRN3Q9UPQ7 1066 aa9.2□□□□□ -0.94
HMGB3P19-201ENST00000403971 TIMP2P16035 220 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 TRAIPQ9BWF2 469 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 USTQ9Y2C2 406 aa9.19□□□□□ -0.94
HMGB3P19-201ENST00000403971 LGR5O75473 907 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 RGS20O76081 388 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 RAB6BQ9NRW1 208 aa9.18□□□□□ -0.94
HMGB3P19-201ENST00000403971 TMEM229AB2RXF0 380 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SCNN1DP51172 638 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM69CQ0P6D2 419 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 AGBL1Q96MI9 1066 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SLAIN2Q9P270 581 aa9.17□□□□□ -0.94
HMGB3P19-201ENST00000403971 SEC13P55735 322 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 CYP2U1Q7Z449 544 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 KDF1Q8NAX2 398 aaPredicted RBP9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 ETNK1Q9HBU6 452 aa9.16□□□□□ -0.94
HMGB3P19-201ENST00000403971 ADH1AP07327 375 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 GDF10P55107 478 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 Q6ZVU0 165 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 TSEN2Q8NCE0 465 aaKnown RBP9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 ARHGEF10LQ9HCE6 1279 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 ZNF358Q9NW07 568 aa9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 RBM19Q9Y4C8 960 aaKnown RBP9.15□□□□□ -0.94
HMGB3P19-201ENST00000403971 FAM187AA6NFU0 413 aa9.14□□□□□ -0.95
HMGB3P19-201ENST00000403971 SERTAD1Q9UHV2 236 aa9.14□□□□□ -0.95
HMGB3P19-201ENST00000403971 RELBQ01201 579 aa9.13□□□□□ -0.95
HMGB3P19-201ENST00000403971 TRIM52Q96A61 297 aa9.13□□□□□ -0.95
HMGB3P19-201ENST00000403971 GNRH1P01148 92 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 INHAP05111 366 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 PDE4CQ08493 712 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 GAS2L2Q8NHY3 880 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 HINFPQ9BQA5 517 aa9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 ZNF395Q9H8N7 513 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P19-201ENST00000403971 CAPN5O15484 640 aaPredicted RBP9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 GFRA3O60609 400 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 PRMT3O60678 531 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 IL2RAP01589 272 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 AEBP1Q8IUX7 1158 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 TNS4Q8IZW8 715 aa9.11□□□□□ -0.95
HMGB3P19-201ENST00000403971 A0A1W2PRU2 124 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 PTGIRP43119 386 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 TRIM26Q12899 539 aaPredicted RBP9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 SWI5Q1ZZU3 235 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 MEIOBQ8N635 442 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 CLP1Q92989 425 aaKnown RBP9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 PRIMPOLQ96LW4 560 aa9.1□□□□□ -0.95
HMGB3P19-201ENST00000403971 MEN1O00255 615 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms