RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 GAS2L2Q8NHY3 880 aa23.79■■□□□ 1.4
SDC1-203ENST00000403076 TRPC5Q9UL62 973 aaPredicted RBP23.79■■□□□ 1.4
SDC1-203ENST00000403076 THRAP3Q9Y2W1 955 aaKnown RBP23.79■■□□□ 1.4
SDC1-203ENST00000403076 SPG7Q9UQ90 795 aa23.77■■□□□ 1.4
SDC1-203ENST00000403076 MEGF6O75095 1541 aa23.77■■□□□ 1.4
SDC1-203ENST00000403076 NGEFQ8N5V2 710 aa23.76■■□□□ 1.39
SDC1-203ENST00000403076 QTRT2Q9H974 415 aaKnown RBP23.76■■□□□ 1.39
SDC1-203ENST00000403076 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.75■■□□□ 1.39
SDC1-203ENST00000403076 ZNF772Q68DY9 489 aaPredicted RBP23.75■■□□□ 1.39
SDC1-203ENST00000403076 ZNF530Q6P9A1 599 aaPredicted RBP23.75■■□□□ 1.39
SDC1-203ENST00000403076 ZCRB1Q8TBF4 217 aaKnown RBP23.74■■□□□ 1.39
SDC1-203ENST00000403076 CDCA7Q9BWT1 371 aaPredicted RBP23.74■■□□□ 1.39
SDC1-203ENST00000403076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.74■■□□□ 1.39
SDC1-203ENST00000403076 OVOS2A0A0G2JMS6 1433 aa23.73■■□□□ 1.39
SDC1-203ENST00000403076 C1orf141Q5JVX7 400 aa23.73■■□□□ 1.39
SDC1-203ENST00000403076 BARGINQ6ZT62 677 aa23.73■■□□□ 1.39
SDC1-203ENST00000403076 GJD4Q96KN9 370 aaPredicted RBP23.73■■□□□ 1.39
SDC1-203ENST00000403076 ATRNO75882 1429 aa23.72■■□□□ 1.39
SDC1-203ENST00000403076 A0A0G2JS52 829 aa23.72■■□□□ 1.39
SDC1-203ENST00000403076 MYT1Q01538 1121 aa23.72■■□□□ 1.39
SDC1-203ENST00000403076 LMOD3Q0VAK6 560 aa23.72■■□□□ 1.39
SDC1-203ENST00000403076 FAM98CQ17RN3 349 aaKnown RBP23.72■■□□□ 1.39
SDC1-203ENST00000403076 PHF23Q9BUL5 403 aaPredicted RBP23.72■■□□□ 1.39
SDC1-203ENST00000403076 PLEKHG2Q9H7P9 1386 aa23.72■■□□□ 1.39
SDC1-203ENST00000403076 RTF1Q92541 710 aaKnown RBP23.71■■□□□ 1.39
SDC1-203ENST00000403076 ZBED9Q6R2W3 1325 aa23.71■■□□□ 1.39
SDC1-203ENST00000403076 PARP4Q9UKK3 1724 aaKnown RBP23.71■■□□□ 1.39
SDC1-203ENST00000403076 EXOC5O00471 708 aa23.7■■□□□ 1.38
SDC1-203ENST00000403076 NCBP3Q53F19 620 aaKnown RBP23.7■■□□□ 1.38
SDC1-203ENST00000403076 GNAT3A8MTJ3 354 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 DISP2A7MBM2 1401 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 CCDC27Q2M243 656 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 AKAP4Q5JQC9 854 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 WWC1Q8IX03 1113 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 DDX54Q8TDD1 881 aaKnown RBP23.69■■□□□ 1.38
SDC1-203ENST00000403076 TRIM35Q9UPQ4 493 aa23.69■■□□□ 1.38
SDC1-203ENST00000403076 IFNL2Q8IZJ0 200 aa23.68■■□□□ 1.38
SDC1-203ENST00000403076 MAP3K5Q99683 1374 aa23.68■■□□□ 1.38
SDC1-203ENST00000403076 DDB1Q16531 1140 aa23.67■■□□□ 1.38
SDC1-203ENST00000403076 PCDH11XQ9BZA7 1347 aa23.67■■□□□ 1.38
SDC1-203ENST00000403076 PCDH11YQ9BZA8 1340 aa23.67■■□□□ 1.38
SDC1-203ENST00000403076 HTATSF1O43719 755 aaKnown RBP23.66■■□□□ 1.38
SDC1-203ENST00000403076 PHKG2P15735 406 aa23.65■■□□□ 1.38
SDC1-203ENST00000403076 DCTN1Q14203 1278 aa23.65■■□□□ 1.38
SDC1-203ENST00000403076 CYP27B1O15528 508 aa23.64■■□□□ 1.38
SDC1-203ENST00000403076 MCM10Q7L590 875 aa23.64■■□□□ 1.38
SDC1-203ENST00000403076 MPRIPQ6WCQ1 1025 aa23.64■■□□□ 1.37
SDC1-203ENST00000403076 THUMPD2Q9BTF0 503 aaKnown RBP23.64■■□□□ 1.37
SDC1-203ENST00000403076 DLG5Q8TDM6 1919 aa23.63■■□□□ 1.37
SDC1-203ENST00000403076 PKD1L3Q7Z443 1732 aa23.63■■□□□ 1.37
SDC1-203ENST00000403076 GLI3P10071 1580 aa23.63■■□□□ 1.37
SDC1-203ENST00000403076 HSP90AB1P08238 724 aaKnown RBP23.63■■□□□ 1.37
SDC1-203ENST00000403076 RBM6P78332 1123 aaKnown RBP23.63■■□□□ 1.37
SDC1-203ENST00000403076 WNK3Q9BYP7 1800 aa23.63■■□□□ 1.37
SDC1-203ENST00000403076 CALD1Q05682 793 aaKnown RBP23.62■■□□□ 1.37
SDC1-203ENST00000403076 GOLGA2Q08379 1002 aa23.62■■□□□ 1.37
SDC1-203ENST00000403076 WDR63Q8IWG1 891 aa23.62■■□□□ 1.37
SDC1-203ENST00000403076 ZNF521Q96K83 1311 aa23.61■■□□□ 1.37
SDC1-203ENST00000403076 IL17REQ8NFR9 667 aa23.6■■□□□ 1.37
SDC1-203ENST00000403076 LGR6Q9HBX8 967 aa23.6■■□□□ 1.37
SDC1-203ENST00000403076 TNS2Q63HR2 1409 aa23.6■■□□□ 1.37
SDC1-203ENST00000403076 RNMTO43148 476 aaKnown RBP23.59■■□□□ 1.37
SDC1-203ENST00000403076 PDE3BQ13370 1112 aa23.59■■□□□ 1.37
SDC1-203ENST00000403076 SEPT12Q8IYM1 358 aa23.59■■□□□ 1.37
SDC1-203ENST00000403076 RGS17Q9UGC6 210 aaPredicted RBP23.59■■□□□ 1.37
SDC1-203ENST00000403076 ONECUT3O60422 494 aaPredicted RBP23.59■■□□□ 1.37
SDC1-203ENST00000403076 RXRBP28702 533 aa23.59■■□□□ 1.37
SDC1-203ENST00000403076 DCAF5Q96JK2 942 aa23.59■■□□□ 1.37
SDC1-203ENST00000403076 LAS1LQ9Y4W2 734 aaKnown RBP23.59■■□□□ 1.37
SDC1-203ENST00000403076 CDCA7LQ96GN5 454 aa23.57■■□□□ 1.36
SDC1-203ENST00000403076 TEFQ10587 303 aa23.56■■□□□ 1.36
SDC1-203ENST00000403076 LRRC37A3O60309 1634 aa23.56■■□□□ 1.36
SDC1-203ENST00000403076 IL16Q14005 1332 aa23.56■■□□□ 1.36
SDC1-203ENST00000403076 NKX1-1Q15270 411 aaPredicted RBP23.55■■□□□ 1.36
SDC1-203ENST00000403076 POTEAQ6S8J7 498 aa23.55■■□□□ 1.36
SDC1-203ENST00000403076 E9PSI1 815 aa23.54■■□□□ 1.36
SDC1-203ENST00000403076 MARCH10Q8NA82 808 aaPredicted RBP23.54■■□□□ 1.36
SDC1-203ENST00000403076 SHANK3Q9BYB0 1731 aa23.54■■□□□ 1.36
SDC1-203ENST00000403076 GNAI1P63096 354 aa23.54■■□□□ 1.36
SDC1-203ENST00000403076 THSD7AQ9UPZ6 1657 aa23.53■■□□□ 1.36
SDC1-203ENST00000403076 CABP4P57796 275 aa23.53■■□□□ 1.36
SDC1-203ENST00000403076 SLFN5Q08AF3 891 aa23.53■■□□□ 1.36
SDC1-203ENST00000403076 MYH16Q9H6N6 1097 aa23.53■■□□□ 1.36
SDC1-203ENST00000403076 SPINK5Q9NQ38 1064 aaPredicted RBP23.53■■□□□ 1.36
SDC1-203ENST00000403076 CEMIPQ8WUJ3 1361 aa23.52■■□□□ 1.36
SDC1-203ENST00000403076 KDM6AO15550 1401 aaPredicted RBP23.52■■□□□ 1.36
SDC1-203ENST00000403076 TAF7Q15545 349 aaPredicted RBP23.52■■□□□ 1.36
SDC1-203ENST00000403076 IFT57Q9NWB7 429 aa23.52■■□□□ 1.36
SDC1-203ENST00000403076 CFAP44Q96MT7 982 aa23.51■■□□□ 1.35
SDC1-203ENST00000403076 ERVV-2B6SEH9 535 aa23.5■■□□□ 1.35
SDC1-203ENST00000403076 CENPBP07199 599 aaPredicted RBP23.49■■□□□ 1.35
SDC1-203ENST00000403076 SLC52A2Q9HAB3 445 aa23.49■■□□□ 1.35
SDC1-203ENST00000403076 NFATC2IPQ8NCF5 419 aa23.49■■□□□ 1.35
SDC1-203ENST00000403076 MIS18AQ9NYP9 233 aa23.49■■□□□ 1.35
SDC1-203ENST00000403076 TSR2Q969E8 191 aaKnown RBP23.48■■□□□ 1.35
SDC1-203ENST00000403076 TSPYL4Q9UJ04 414 aa23.48■■□□□ 1.35
SDC1-203ENST00000403076 SCN11AQ9UI33 1791 aa23.48■■□□□ 1.35
SDC1-203ENST00000403076 BTBD11A6QL63 1104 aa23.47■■□□□ 1.35
SDC1-203ENST00000403076 CHL1O00533 1208 aa23.47■■□□□ 1.35
SDC1-203ENST00000403076 ZNF853P0CG23 659 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms