RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SPATA31A7Q8IWB4 1347 aa12.84□□□□□ -0.35
VPS53-203ENST00000401468 TMF1P82094 1093 aa12.82□□□□□ -0.36
VPS53-203ENST00000401468 LARP1Q6PKG0 1096 aaKnown RBP12.82□□□□□ -0.36
VPS53-203ENST00000401468 CCDC125Q86Z20 511 aa12.82□□□□□ -0.36
VPS53-203ENST00000401468 FAM163AQ96GL9 167 aaPredicted RBP12.82□□□□□ -0.36
VPS53-203ENST00000401468 PARP4Q9UKK3 1724 aaKnown RBP12.82□□□□□ -0.36
VPS53-203ENST00000401468 NINLQ9Y2I6 1382 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 LRRC37A3O60309 1634 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 BLMP54132 1417 aaPredicted RBP12.81□□□□□ -0.36
VPS53-203ENST00000401468 SSH2Q76I76 1423 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 POTEMA6NI47 508 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 C11orf95C9JLR9 678 aaPredicted RBP12.81□□□□□ -0.36
VPS53-203ENST00000401468 EVA1CP58658 441 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 NLRP6P59044 892 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 SLAIN1Q8ND83 568 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 SPATA31A1Q5TZJ5 1347 aa12.81□□□□□ -0.36
VPS53-203ENST00000401468 CD163L1Q9NR16 1453 aa12.8□□□□□ -0.36
VPS53-203ENST00000401468 SLIT3O75094 1523 aa12.8□□□□□ -0.36
VPS53-203ENST00000401468 PSDA5PKW4 1024 aaPredicted RBP12.8□□□□□ -0.36
VPS53-203ENST00000401468 CDCA8Q53HL2 280 aa12.8□□□□□ -0.36
VPS53-203ENST00000401468 USP19O94966 1318 aa12.8□□□□□ -0.36
VPS53-203ENST00000401468 USP54Q70EL1 1684 aa12.8□□□□□ -0.36
VPS53-203ENST00000401468 NUP188Q5SRE5 1749 aa12.79□□□□□ -0.36
VPS53-203ENST00000401468 ONECUT3O60422 494 aaPredicted RBP12.79□□□□□ -0.36
VPS53-203ENST00000401468 GCP02774 474 aa12.79□□□□□ -0.36
VPS53-203ENST00000401468 POTEGQ6S5H5 508 aa12.79□□□□□ -0.36
VPS53-203ENST00000401468 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.79□□□□□ -0.364e-6■■■■□ 21.2
VPS53-203ENST00000401468 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.79□□□□□ -0.361e-6■■□□□ 14.2
VPS53-203ENST00000401468 CPSF1Q10570 1443 aaKnown RBP12.79□□□□□ -0.36
VPS53-203ENST00000401468 COL5A2P05997 1499 aaPredicted RBP12.78□□□□□ -0.36
VPS53-203ENST00000401468 YY1P25490 414 aa12.78□□□□□ -0.36
VPS53-203ENST00000401468 SF3B2Q13435 895 aaKnown RBP12.78□□□□□ -0.36
VPS53-203ENST00000401468 NLRP13Q86W25 1043 aa12.78□□□□□ -0.36
VPS53-203ENST00000401468 TMC1Q8TDI8 760 aa12.78□□□□□ -0.36
VPS53-203ENST00000401468 KIF7Q2M1P5 1343 aa12.78□□□□□ -0.36
VPS53-203ENST00000401468 CCDC7Q96M83 1385 aa12.78□□□□□ -0.36
VPS53-203ENST00000401468 RREB1Q92766 1687 aa12.77□□□□□ -0.36
VPS53-203ENST00000401468 KIF20BQ96Q89 1820 aa12.77□□□□□ -0.37
VPS53-203ENST00000401468 EN1Q05925 392 aaPredicted RBP12.77□□□□□ -0.37
VPS53-203ENST00000401468 PDCD7Q8N8D1 485 aaKnown RBP12.77□□□□□ -0.37
VPS53-203ENST00000401468 WASHC2AQ641Q2 1341 aa12.77□□□□□ -0.37
VPS53-203ENST00000401468 KTN1Q86UP2 1357 aaKnown RBP12.77□□□□□ -0.37
VPS53-203ENST00000401468 NFAT5O94916 1531 aa12.77□□□□□ -0.37
VPS53-203ENST00000401468 PEAK1Q9H792 1746 aa12.76□□□□□ -0.37
VPS53-203ENST00000401468 TRIM37O94972 964 aa12.76□□□□□ -0.37
VPS53-203ENST00000401468 TTC21BQ7Z4L5 1316 aa12.76□□□□□ -0.37
VPS53-203ENST00000401468 BRD4O60885 1362 aaPredicted RBP12.75□□□□□ -0.37
VPS53-203ENST00000401468 NME9Q86XW9 330 aa12.75□□□□□ -0.37
VPS53-203ENST00000401468 SLC12A5Q9H2X9 1139 aa12.75□□□□□ -0.37
VPS53-203ENST00000401468 AXIN2Q9Y2T1 843 aa12.75□□□□□ -0.37
VPS53-203ENST00000401468 ANKRD26Q9UPS8 1709 aa12.74□□□□□ -0.37
VPS53-203ENST00000401468 CPDO75976 1380 aa12.74□□□□□ -0.37
VPS53-203ENST00000401468 ANKRD36BQ8N2N9 1353 aa12.73□□□□□ -0.37
VPS53-203ENST00000401468 EZH2Q15910 746 aaKnown RBP12.73□□□□□ -0.37
VPS53-203ENST00000401468 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.73□□□□□ -0.37
VPS53-203ENST00000401468 A0A1W2PP64 1363 aa12.72□□□□□ -0.37
VPS53-203ENST00000401468 LCE2DQ5TA82 110 aaPredicted RBP12.72□□□□□ -0.37
VPS53-203ENST00000401468 PTF1AQ7RTS3 328 aa12.72□□□□□ -0.37
VPS53-203ENST00000401468 TCP11L2Q8N4U5 519 aa12.72□□□□□ -0.37
VPS53-203ENST00000401468 CRB1P82279 1406 aa12.71□□□□□ -0.37
VPS53-203ENST00000401468 FBLN1P23142 703 aa12.71□□□□□ -0.37
VPS53-203ENST00000401468 BAG6P46379 1132 aa12.71□□□□□ -0.37
VPS53-203ENST00000401468 TOM1L2Q6ZVM7 507 aa12.71□□□□□ -0.37
VPS53-203ENST00000401468 L3MBTL3Q96JM7 780 aaPredicted RBP12.71□□□□□ -0.37
VPS53-203ENST00000401468 ZNF316A6NFI3 1004 aaPredicted RBP12.7□□□□□ -0.38
VPS53-203ENST00000401468 PDE3BQ13370 1112 aa12.7□□□□□ -0.38
VPS53-203ENST00000401468 C3orf67Q6ZVT6 689 aa12.7□□□□□ -0.38
VPS53-203ENST00000401468 EDC4Q6P2E9 1401 aaKnown RBP12.7□□□□□ -0.38
VPS53-203ENST00000401468 BTAF1O14981 1849 aa12.69□□□□□ -0.38
VPS53-203ENST00000401468 MAP2P11137 1827 aaKnown RBP12.69□□□□□ -0.38
VPS53-203ENST00000401468 RIOK3O14730 519 aaKnown RBP12.69□□□□□ -0.38
VPS53-203ENST00000401468 APBA3O96018 575 aa12.69□□□□□ -0.38
VPS53-203ENST00000401468 CSB-PGBD3P0DP91 1061 aa12.69□□□□□ -0.38
VPS53-203ENST00000401468 R3HDM1Q15032 1099 aaKnown RBP12.69□□□□□ -0.38
VPS53-203ENST00000401468 AATKQ6ZMQ8 1374 aa12.69□□□□□ -0.38
VPS53-203ENST00000401468 SHANK3Q9BYB0 1731 aa12.68□□□□□ -0.38
VPS53-203ENST00000401468 BARGINQ6ZT62 677 aa12.67□□□□□ -0.38
VPS53-203ENST00000401468 ARHGEF25Q86VW2 580 aa12.67□□□□□ -0.38
VPS53-203ENST00000401468 RNF25Q96BH1 459 aaPredicted RBP12.67□□□□□ -0.38
VPS53-203ENST00000401468 LTV1Q96GA3 475 aaPredicted RBP12.67□□□□□ -0.38
VPS53-203ENST00000401468 TERF2IPQ9NYB0 399 aa12.67□□□□□ -0.38
VPS53-203ENST00000401468 TTC21AQ8NDW8 1320 aa12.66□□□□□ -0.38
VPS53-203ENST00000401468 DOT1LQ8TEK3 1739 aa12.66□□□□□ -0.38
VPS53-203ENST00000401468 PER1O15534 1290 aaPredicted RBP12.66□□□□□ -0.38
VPS53-203ENST00000401468 FAM196AQ6ZSG2 479 aa12.66□□□□□ -0.38
VPS53-203ENST00000401468 CARD14Q9BXL6 1004 aa12.66□□□□□ -0.38
VPS53-203ENST00000401468 WDR17Q8IZU2 1322 aa12.65□□□□□ -0.38
VPS53-203ENST00000401468 HDGFL2Q7Z4V5 671 aaPredicted RBP12.65□□□□□ -0.38
VPS53-203ENST00000401468 PLSCR2Q9NRY7 297 aa12.65□□□□□ -0.38
VPS53-203ENST00000401468 TUBGCP6Q96RT7 1819 aa12.65□□□□□ -0.39
VPS53-203ENST00000401468 FAM208AQ9UK61 1670 aaKnown RBP12.64□□□□□ -0.39
VPS53-203ENST00000401468 OVOS2A0A0J9YW53 1432 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 OVOS2Q6IE36 1432 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 NSD3Q9BZ95 1437 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 RGPD3A6NKT7 1758 aaPredicted RBP12.64□□□□□ -0.39
VPS53-203ENST00000401468 RGPD4Q7Z3J3 1758 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 SENP3-EIF4A1A0A087X0R7 540 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 DPY19L2Q6NUT2 758 aa12.64□□□□□ -0.39
VPS53-203ENST00000401468 MARCH10Q8NA82 808 aaPredicted RBP12.64□□□□□ -0.39
VPS53-203ENST00000401468 CAMKK2Q96RR4 588 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms