RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 GPR37O15354 613 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 CCDC27Q2M243 656 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 BARGINQ6ZT62 677 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 TSC1Q92574 1164 aa12.17□□□□□ -0.46
PTCHD4-202ENST00000398738 NLRP7Q8WX94 980 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 MYO5CQ9NQX4 1742 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 TRAPPC8Q9Y2L5 1435 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 PPP1R9BQ96SB3 815 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 KDM4CQ9H3R0 1056 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 ARAP3Q8WWN8 1544 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 ARHGEF5Q12774 1597 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 GGT6Q6P531 493 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 TSPYL6Q8N831 410 aa12.16□□□□□ -0.46
PTCHD4-202ENST00000398738 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.15□□□□□ -0.46
PTCHD4-202ENST00000398738 A0A0U1RQG5 324 aaPredicted RBP12.15□□□□□ -0.46
PTCHD4-202ENST00000398738 FAM177BA6PVY3 158 aa12.15□□□□□ -0.46
PTCHD4-202ENST00000398738 OTUD7AQ8TE49 926 aaPredicted RBP12.15□□□□□ -0.46
PTCHD4-202ENST00000398738 ZHX1Q9UKY1 873 aaPredicted RBP12.15□□□□□ -0.46
PTCHD4-202ENST00000398738 TSPOAP1O95153 1857 aa12.15□□□□□ -0.47
PTCHD4-202ENST00000398738 KIF16BQ96L93 1317 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 C19orf67A6NJJ6 358 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 SMARCA5O60264 1052 aaPredicted RBP12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 CDC45O75419 566 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 NSFL1CQ9UNZ2 370 aaKnown RBP12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 SCAPERQ9BY12 1400 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 UGGT1Q9NYU2 1555 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.14□□□□□ -0.471e-7■■■□□ 17
PTCHD4-202ENST00000398738 PTPRTO14522 1441 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 TTC37Q6PGP7 1564 aa12.14□□□□□ -0.47
PTCHD4-202ENST00000398738 KANK1Q14678 1352 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 VIRMAQ69YN4 1812 aaKnown RBP12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 PTMSP20962 102 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 PLPP6Q8IY26 295 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 ZNF830Q96NB3 372 aaPredicted RBP12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 LMBRD1Q9NUN5 540 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 ATP10AO60312 1499 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 SIRT2Q8IXJ6 389 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 ZMYM3Q14202 1370 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 LAMC1P11047 1609 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 ZBTB7BO15156 539 aaPredicted RBP12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 GSPT1P15170 499 aaKnown RBP12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 PRKAR2BP31323 418 aa12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 COLQQ9Y215 455 aaPredicted RBP12.13□□□□□ -0.47
PTCHD4-202ENST00000398738 GPT2Q8TD30 523 aa12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 GDPD2Q9HCC8 539 aa12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 CFAP74Q9C0B2 1584 aa12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 MADDQ8WXG6 1647 aa12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 NCOA3Q9Y6Q9 1424 aa12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 ILDR1Q86SU0 546 aaPredicted RBP12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 MINK1Q8N4C8 1332 aaPredicted RBP12.12□□□□□ -0.47
PTCHD4-202ENST00000398738 DIAPH1O60610 1272 aaKnown RBP12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 STAC3Q96MF2 364 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 HAX1O00165 279 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 NUCB2P80303 420 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 PLEKHF1Q96S99 279 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 TMEM63CQ9P1W3 806 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 NOS1P29475 1434 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 DUOX2Q9NRD8 1548 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 CDC42BPBQ9Y5S2 1711 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 GCC1Q96CN9 775 aa12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 NOL7Q9UMY1 257 aaKnown RBP12.11□□□□□ -0.47
PTCHD4-202ENST00000398738 NUTM2FA1L443 756 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 TRIM66O15016 1216 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 CT47B1P0C2W7 299 aaPredicted RBP12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 C17orf53Q8N3J3 647 aaPredicted RBP12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 MAST1Q9Y2H9 1570 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 DTNBO60941 627 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 PPIP5K1Q6PFW1 1433 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 CD109Q6YHK3 1445 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 PREX2Q70Z35 1606 aa12.1□□□□□ -0.47
PTCHD4-202ENST00000398738 EVC2Q86UK5 1308 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 DCTN1Q14203 1278 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 RABEP1Q15276 862 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 TSHZ3Q63HK5 1081 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 AK9Q5TCS8 1911 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 KDM5AP29375 1690 aaKnown RBP12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 ZNF518AQ6AHZ1 1483 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 PDE4DQ08499 809 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 PDIA6Q15084 440 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 PHACTR3Q96KR7 559 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 ZNF445P59923 1031 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 ZKSCAN5Q9Y2L8 839 aa12.09□□□□□ -0.47
PTCHD4-202ENST00000398738 UNC13BO14795 1591 aa12.08□□□□□ -0.47
PTCHD4-202ENST00000398738 MYOM1P52179 1685 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 IQGAP3Q86VI3 1631 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 PLEKHM2Q8IWE5 1019 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 IQSEC2Q5JU85 1478 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 ST18O60284 1047 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 NEK4P51957 841 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 FAM69CQ0P6D2 419 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 PODXL2Q9NZ53 605 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 RNF17Q9BXT8 1623 aaKnown RBP12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 PLXNC1O60486 1568 aa12.08□□□□□ -0.48
PTCHD4-202ENST00000398738 FAM83GA6ND36 823 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 IQGAP1P46940 1657 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 NEO1Q92859 1461 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 USP26Q9BXU7 913 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 VAMP4O75379 141 aa12.07□□□□□ -0.48
PTCHD4-202ENST00000398738 FRMPD1Q5SYB0 1578 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms