RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 MCM10Q7L590 875 aa27.71■■■□□ 2.03
CPNE1-204ENST00000397443 NCBP3Q53F19 620 aaKnown RBP27.71■■■□□ 2.03
CPNE1-204ENST00000397443 LMOD3Q0VAK6 560 aa27.7■■■□□ 2.02
CPNE1-204ENST00000397443 ZNF530Q6P9A1 599 aaPredicted RBP27.7■■■□□ 2.02
CPNE1-204ENST00000397443 WDR63Q8IWG1 891 aa27.7■■■□□ 2.02
CPNE1-204ENST00000397443 SLFN5Q08AF3 891 aa27.69■■■□□ 2.02
CPNE1-204ENST00000397443 RTF1Q92541 710 aaKnown RBP27.69■■■□□ 2.02
CPNE1-204ENST00000397443 CCDC9Q9Y3X0 531 aaKnown RBP27.69■■■□□ 2.02
CPNE1-204ENST00000397443 AMOTQ4VCS5 1084 aa27.68■■■□□ 2.02
CPNE1-204ENST00000397443 LAS1LQ9Y4W2 734 aaKnown RBP27.68■■■□□ 2.02
CPNE1-204ENST00000397443 E9PSI1 815 aa27.67■■■□□ 2.02
CPNE1-204ENST00000397443 SLIT2O94813 1529 aa27.67■■■□□ 2.02
CPNE1-204ENST00000397443 GNAT3A8MTJ3 354 aa27.67■■■□□ 2.02
CPNE1-204ENST00000397443 NRAPQ86VF7 1730 aa27.66■■■□□ 2.02
CPNE1-204ENST00000397443 MAP3K5Q99683 1374 aa27.66■■■□□ 2.02
CPNE1-204ENST00000397443 IL2RBP14784 551 aa27.65■■■□□ 2.02
CPNE1-204ENST00000397443 DUSP27Q5VZP5 1158 aa27.65■■■□□ 2.02
CPNE1-204ENST00000397443 NWD2Q9ULI1 1742 aa27.64■■■□□ 2.02
CPNE1-204ENST00000397443 C1orf141Q5JVX7 400 aa27.64■■■□□ 2.02
CPNE1-204ENST00000397443 UNC5CLQ8IV45 518 aa27.63■■■□□ 2.01
CPNE1-204ENST00000397443 TSR2Q969E8 191 aaKnown RBP27.63■■■□□ 2.01
CPNE1-204ENST00000397443 SPG7Q9UQ90 795 aa27.63■■■□□ 2.01
CPNE1-204ENST00000397443 AKAP4Q5JQC9 854 aa27.61■■■□□ 2.01
CPNE1-204ENST00000397443 MPRIPQ6WCQ1 1025 aa27.61■■■□□ 2.01
CPNE1-204ENST00000397443 USP21Q9UK80 565 aa27.61■■■□□ 2.01
CPNE1-204ENST00000397443 OVOS2A0A0G2JMS6 1433 aa27.6■■■□□ 2.01
CPNE1-204ENST00000397443 MYH16Q9H6N6 1097 aa27.6■■■□□ 2.01
CPNE1-204ENST00000397443 PARP4Q9UKK3 1724 aaKnown RBP27.6■■■□□ 2.01
CPNE1-204ENST00000397443 BCL9LQ86UU0 1499 aa27.6■■■□□ 2.01
CPNE1-204ENST00000397443 CALD1Q05682 793 aaKnown RBP27.59■■■□□ 2.01
CPNE1-204ENST00000397443 TRMT2AQ8IZ69 625 aaKnown RBP27.59■■■□□ 2.01
CPNE1-204ENST00000397443 FNBP4Q8N3X1 1017 aaPredicted RBP27.59■■■□□ 2.01
CPNE1-204ENST00000397443 FBXO41Q8TF61 875 aa27.59■■■□□ 2.01
CPNE1-204ENST00000397443 SPATA31A1Q5TZJ5 1347 aa27.59■■■□□ 2.01
CPNE1-204ENST00000397443 IL17REQ8NFR9 667 aa27.59■■■□□ 2.01
CPNE1-204ENST00000397443 IL16Q14005 1332 aa27.58■■■□□ 2.01
CPNE1-204ENST00000397443 ZCRB1Q8TBF4 217 aaKnown RBP27.58■■■□□ 2.01
CPNE1-204ENST00000397443 LGR6Q9HBX8 967 aa27.58■■■□□ 2.01
CPNE1-204ENST00000397443 HTATSF1O43719 755 aaKnown RBP27.57■■■□□ 2
CPNE1-204ENST00000397443 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP27.57■■■□□ 21e-6■■□□□ 12.2
CPNE1-204ENST00000397443 AFF2P51816 1311 aa27.57■■■□□ 2
CPNE1-204ENST00000397443 SPATA31A5Q5VU36 1347 aa27.57■■■□□ 2
CPNE1-204ENST00000397443 SPATA31A7Q8IWB4 1347 aa27.57■■■□□ 2
CPNE1-204ENST00000397443 FANCIQ9NVI1 1328 aa27.57■■■□□ 2
CPNE1-204ENST00000397443 CYP27B1O15528 508 aa27.56■■■□□ 2
CPNE1-204ENST00000397443 DDX54Q8TDD1 881 aaKnown RBP27.56■■■□□ 2
CPNE1-204ENST00000397443 PHKG2P15735 406 aa27.55■■■□□ 2
CPNE1-204ENST00000397443 PKD1L3Q7Z443 1732 aa27.55■■■□□ 2
CPNE1-204ENST00000397443 IFT57Q9NWB7 429 aa27.55■■■□□ 2
CPNE1-204ENST00000397443 MIS18AQ9NYP9 233 aa27.55■■■□□ 2
CPNE1-204ENST00000397443 GNAI1P63096 354 aa27.54■■■□□ 2
CPNE1-204ENST00000397443 IFNL2Q8IZJ0 200 aa27.54■■■□□ 2
CPNE1-204ENST00000397443 VPS72Q15906 364 aa27.53■■■□□ 2
CPNE1-204ENST00000397443 CFAP44Q96MT7 982 aa27.53■■■□□ 2
CPNE1-204ENST00000397443 SUPT16HQ9Y5B9 1047 aaKnown RBP27.53■■■□□ 2
CPNE1-204ENST00000397443 PCDH11XQ9BZA7 1347 aa27.52■■■□□ 2
CPNE1-204ENST00000397443 PCDH11YQ9BZA8 1340 aa27.52■■■□□ 2
CPNE1-204ENST00000397443 MBIPQ9NS73 344 aa27.52■■■□□ 2
CPNE1-204ENST00000397443 DISP2A7MBM2 1401 aa27.52■■■□□ 2
CPNE1-204ENST00000397443 RNMTO43148 476 aaKnown RBP27.51■■■□□ 2
CPNE1-204ENST00000397443 ZNF853P0CG23 659 aa27.5■■□□□ 1.99
CPNE1-204ENST00000397443 THRAP3Q9Y2W1 955 aaKnown RBP27.5■■□□□ 1.99
CPNE1-204ENST00000397443 PLEKHG2Q9H7P9 1386 aa27.5■■□□□ 1.99
CPNE1-204ENST00000397443 EXOSC9Q06265 439 aaKnown RBP27.49■■□□□ 1.99
CPNE1-204ENST00000397443 FAM98CQ17RN3 349 aaKnown RBP27.49■■□□□ 1.99
CPNE1-204ENST00000397443 RCAN3Q9UKA8 241 aa27.49■■□□□ 1.99
CPNE1-204ENST00000397443 VIRMAQ69YN4 1812 aaKnown RBP27.49■■□□□ 1.99
CPNE1-204ENST00000397443 TEFQ10587 303 aa27.49■■□□□ 1.99
CPNE1-204ENST00000397443 CEMIPQ8WUJ3 1361 aa27.48■■□□□ 1.99
CPNE1-204ENST00000397443 WNK3Q9BYP7 1800 aa27.48■■□□□ 1.99
CPNE1-204ENST00000397443 LRRC37A3O60309 1634 aa27.48■■□□□ 1.99
CPNE1-204ENST00000397443 A0A0G2JS52 829 aa27.47■■□□□ 1.99
CPNE1-204ENST00000397443 EXOC5O00471 708 aa27.47■■□□□ 1.99
CPNE1-204ENST00000397443 MYT1Q01538 1121 aa27.47■■□□□ 1.99
CPNE1-204ENST00000397443 TSPYL4Q9UJ04 414 aa27.47■■□□□ 1.99
CPNE1-204ENST00000397443 SHANK3Q9BYB0 1731 aa27.46■■□□□ 1.99
CPNE1-204ENST00000397443 KDM6AO15550 1401 aaPredicted RBP27.46■■□□□ 1.99
CPNE1-204ENST00000397443 CHL1O00533 1208 aa27.46■■□□□ 1.99
CPNE1-204ENST00000397443 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.45■■□□□ 1.99
CPNE1-204ENST00000397443 TAF7Q15545 349 aaPredicted RBP27.45■■□□□ 1.99
CPNE1-204ENST00000397443 ELL2O00472 640 aaPredicted RBP27.44■■□□□ 1.98
CPNE1-204ENST00000397443 BARGINQ6ZT62 677 aa27.44■■□□□ 1.98
CPNE1-204ENST00000397443 DCAF5Q96JK2 942 aa27.44■■□□□ 1.98
CPNE1-204ENST00000397443 CDCA7Q9BWT1 371 aaPredicted RBP27.44■■□□□ 1.98
CPNE1-204ENST00000397443 HSP90AB1P08238 724 aaKnown RBP27.43■■□□□ 1.98
CPNE1-204ENST00000397443 DDB1Q16531 1140 aa27.43■■□□□ 1.98
CPNE1-204ENST00000397443 SCN11AQ9UI33 1791 aa27.42■■□□□ 1.98
CPNE1-204ENST00000397443 KRT24Q2M2I5 525 aa27.41■■□□□ 1.98
CPNE1-204ENST00000397443 TRPC5Q9UL62 973 aaPredicted RBP27.41■■□□□ 1.98
CPNE1-204ENST00000397443 GJD4Q96KN9 370 aaPredicted RBP27.41■■□□□ 1.98
CPNE1-204ENST00000397443 TNS2Q63HR2 1409 aa27.4■■□□□ 1.98
CPNE1-204ENST00000397443 BTBD11A6QL63 1104 aa27.4■■□□□ 1.98
CPNE1-204ENST00000397443 NFATC2IPQ8NCF5 419 aa27.4■■□□□ 1.98
CPNE1-204ENST00000397443 QTRT2Q9H974 415 aaKnown RBP27.4■■□□□ 1.98
CPNE1-204ENST00000397443 TSPYL6Q8N831 410 aa27.39■■□□□ 1.98
CPNE1-204ENST00000397443 C8orf58Q8NAV2 365 aa27.39■■□□□ 1.97
CPNE1-204ENST00000397443 SLC52A2Q9HAB3 445 aa27.39■■□□□ 1.97
CPNE1-204ENST00000397443 KAT6BQ8WYB5 2073 aa27.38■■□□□ 1.97
CPNE1-204ENST00000397443 ADAMTS7Q9UKP4 1686 aa27.38■■□□□ 1.97
CPNE1-204ENST00000397443 ATRNO75882 1429 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms