RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 ACSBG1Q96GR2 724 aa19.84■□□□□ 0.77
SEC13-208ENST00000397109 NBPF14Q5TI25 921 aa19.83■□□□□ 0.76
SEC13-208ENST00000397109 RGPD3A6NKT7 1758 aaPredicted RBP19.83■□□□□ 0.76
SEC13-208ENST00000397109 RGPD4Q7Z3J3 1758 aa19.83■□□□□ 0.76
SEC13-208ENST00000397109 KCNQ2O43526 872 aa19.82■□□□□ 0.76
SEC13-208ENST00000397109 EYA1Q99502 592 aa19.82■□□□□ 0.76
SEC13-208ENST00000397109 NCAPD2Q15021 1401 aa19.81■□□□□ 0.76
SEC13-208ENST00000397109 EIF4A2Q14240 407 aaKnown RBP19.81■□□□□ 0.76
SEC13-208ENST00000397109 RREB1Q92766 1687 aa19.81■□□□□ 0.76
SEC13-208ENST00000397109 NHSQ6T4R5 1651 aa19.81■□□□□ 0.76
SEC13-208ENST00000397109 PSDA5PKW4 1024 aaPredicted RBP19.79■□□□□ 0.76
SEC13-208ENST00000397109 NPC1L1Q9UHC9 1359 aa19.79■□□□□ 0.76
SEC13-208ENST00000397109 PCDH11XQ9BZA7 1347 aa19.79■□□□□ 0.76
SEC13-208ENST00000397109 PCDH11YQ9BZA8 1340 aa19.79■□□□□ 0.76
SEC13-208ENST00000397109 R3HDM1Q15032 1099 aaKnown RBP19.79■□□□□ 0.76
SEC13-208ENST00000397109 NUP188Q5SRE5 1749 aa19.77■□□□□ 0.76
SEC13-208ENST00000397109 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.77■□□□□ 0.764e-7■■■□□ 17.9
SEC13-208ENST00000397109 SPG7Q9UQ90 795 aa19.77■□□□□ 0.76
SEC13-208ENST00000397109 SHANK3Q9BYB0 1731 aa19.77■□□□□ 0.76
SEC13-208ENST00000397109 TXNRD1Q16881 649 aa19.76■□□□□ 0.75
SEC13-208ENST00000397109 CC2D1BQ5T0F9 858 aaKnown RBP19.76■□□□□ 0.75
SEC13-208ENST00000397109 PROM2Q8N271 834 aa19.76■□□□□ 0.75
SEC13-208ENST00000397109 IGSF1Q8N6C5 1336 aa19.76■□□□□ 0.75
SEC13-208ENST00000397109 PRIM1P49642 420 aaKnown RBP19.75■□□□□ 0.75
SEC13-208ENST00000397109 PLEKHG2Q9H7P9 1386 aa19.75■□□□□ 0.75
SEC13-208ENST00000397109 SYTL4Q96C24 671 aaPredicted RBP19.74■□□□□ 0.75
SEC13-208ENST00000397109 BTAF1O14981 1849 aa19.74■□□□□ 0.75
SEC13-208ENST00000397109 ZNF316A6NFI3 1004 aaPredicted RBP19.73■□□□□ 0.75
SEC13-208ENST00000397109 CYP27B1O15528 508 aa19.73■□□□□ 0.75
SEC13-208ENST00000397109 MTHFSP49914 203 aa19.73■□□□□ 0.75
SEC13-208ENST00000397109 PKD1L3Q7Z443 1732 aa19.72■□□□□ 0.75
SEC13-208ENST00000397109 DOT1LQ8TEK3 1739 aa19.7■□□□□ 0.74
SEC13-208ENST00000397109 IL13P35225 146 aa19.7■□□□□ 0.74
SEC13-208ENST00000397109 NKX1-1Q15270 411 aaPredicted RBP19.7■□□□□ 0.74
SEC13-208ENST00000397109 SLC27A3Q5K4L6 730 aa19.69■□□□□ 0.74
SEC13-208ENST00000397109 IFNL2Q8IZJ0 200 aa19.69■□□□□ 0.74
SEC13-208ENST00000397109 STK32BQ9NY57 414 aa19.69■□□□□ 0.74
SEC13-208ENST00000397109 ANO8Q9HCE9 1232 aaPredicted RBP19.68■□□□□ 0.74
SEC13-208ENST00000397109 CNGB1Q14028 1251 aaPredicted RBP19.67■□□□□ 0.74
SEC13-208ENST00000397109 AMOTQ4VCS5 1084 aa19.67■□□□□ 0.74
SEC13-208ENST00000397109 PLEKHO1Q53GL0 409 aaPredicted RBP19.67■□□□□ 0.74
SEC13-208ENST00000397109 LRP5O75197 1615 aa19.66■□□□□ 0.74
SEC13-208ENST00000397109 SRCAPQ6ZRS2 3230 aa19.66■□□□□ 0.74
SEC13-208ENST00000397109 PHKG2P15735 406 aa19.66■□□□□ 0.74
SEC13-208ENST00000397109 SLC15A2Q16348 729 aa19.66■□□□□ 0.74
SEC13-208ENST00000397109 SULT6B1Q6IMI4 303 aa19.66■□□□□ 0.74
SEC13-208ENST00000397109 DIAPH1O60610 1272 aaKnown RBP19.65■□□□□ 0.74
SEC13-208ENST00000397109 HMGB2P26583 209 aaKnown RBP19.65■□□□□ 0.74
SEC13-208ENST00000397109 KDRP35968 1356 aa19.65■□□□□ 0.74
SEC13-208ENST00000397109 HSP90AB1P08238 724 aaKnown RBP19.64■□□□□ 0.73
SEC13-208ENST00000397109 MPRIPQ6WCQ1 1025 aa19.64■□□□□ 0.73
SEC13-208ENST00000397109 AEBP1Q8IUX7 1158 aa19.64■□□□□ 0.73
SEC13-208ENST00000397109 LRRC4BQ9NT99 713 aa19.64■□□□□ 0.73
SEC13-208ENST00000397109 SMARCC1Q92922 1105 aaPredicted RBP19.62■□□□□ 0.73
SEC13-208ENST00000397109 ZNF530Q6P9A1 599 aaPredicted RBP19.61■□□□□ 0.73
SEC13-208ENST00000397109 SPON1Q9HCB6 807 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 TMOD3Q9NYL9 352 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 CCNL1Q9UK58 526 aaPredicted RBP19.6■□□□□ 0.73
SEC13-208ENST00000397109 ITGB4P16144 1822 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 LY75O60449 1722 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 C1orf141Q5JVX7 400 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 PIGBQ92521 554 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 DCAF5Q96JK2 942 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 CFAP53Q96M91 514 aa19.6■□□□□ 0.73
SEC13-208ENST00000397109 TOGARAM1Q9Y4F4 1720 aa19.59■□□□□ 0.73
SEC13-208ENST00000397109 ERVV-2B6SEH9 535 aa19.59■□□□□ 0.73
SEC13-208ENST00000397109 PAPPAQ13219 1627 aa19.59■□□□□ 0.73
SEC13-208ENST00000397109 AKT1S1Q96B36 256 aa19.58■□□□□ 0.72
SEC13-208ENST00000397109 PALLDQ8WX93 1383 aa19.57■□□□□ 0.72
SEC13-208ENST00000397109 HMOX1P09601 288 aa19.57■□□□□ 0.72
SEC13-208ENST00000397109 COL3A1P02461 1466 aaPredicted RBP19.56■□□□□ 0.72
SEC13-208ENST00000397109 PPP2R1AP30153 589 aa19.56■□□□□ 0.72
SEC13-208ENST00000397109 ZNF827Q17R98 1081 aa19.56■□□□□ 0.72
SEC13-208ENST00000397109 KCNQ4P56696 695 aa19.55■□□□□ 0.72
SEC13-208ENST00000397109 CASZ1Q86V15 1759 aa19.55■□□□□ 0.72
SEC13-208ENST00000397109 U2SURPO15042 1029 aaKnown RBP19.54■□□□□ 0.72
SEC13-208ENST00000397109 NUDCQ9Y266 331 aa19.54■□□□□ 0.72
SEC13-208ENST00000397109 AKAP4Q5JQC9 854 aa19.54■□□□□ 0.72
SEC13-208ENST00000397109 DIEXFQ68CQ4 756 aaKnown RBP19.54■□□□□ 0.72
SEC13-208ENST00000397109 PDGFDQ9GZP0 370 aaPredicted RBP19.54■□□□□ 0.72
SEC13-208ENST00000397109 TFCP2L1Q9NZI6 479 aa19.54■□□□□ 0.72
SEC13-208ENST00000397109 CABP4P57796 275 aa19.53■□□□□ 0.72
SEC13-208ENST00000397109 MTFR1LQ9H019 292 aa19.53■□□□□ 0.72
SEC13-208ENST00000397109 ZBTB7AO95365 584 aa19.52■□□□□ 0.72
SEC13-208ENST00000397109 PPP1R1BQ9UD71 204 aaPredicted RBP19.52■□□□□ 0.72
SEC13-208ENST00000397109 ASAP1Q9ULH1 1129 aa19.52■□□□□ 0.72
SEC13-208ENST00000397109 KDM6AO15550 1401 aaPredicted RBP19.51■□□□□ 0.71
SEC13-208ENST00000397109 LOC102724428A0A0B4J2F2 783 aa19.51■□□□□ 0.71
SEC13-208ENST00000397109 SIK1P57059 783 aa19.51■□□□□ 0.71
SEC13-208ENST00000397109 SLC16A10Q8TF71 515 aa19.51■□□□□ 0.71
SEC13-208ENST00000397109 ATG3Q9NT62 314 aa19.51■□□□□ 0.71
SEC13-208ENST00000397109 QSER1Q2KHR3 1735 aa19.5■□□□□ 0.71
SEC13-208ENST00000397109 DDX10Q13206 875 aaKnown RBP19.49■□□□□ 0.71
SEC13-208ENST00000397109 ATF5Q9Y2D1 282 aaPredicted RBP19.49■□□□□ 0.71
SEC13-208ENST00000397109 MTHFSDQ2M296 383 aaKnown RBP19.48■□□□□ 0.71
SEC13-208ENST00000397109 PNPLA7Q6ZV29 1317 aa19.48■□□□□ 0.71
SEC13-208ENST00000397109 FLAD1Q8NFF5 587 aa19.48■□□□□ 0.71
SEC13-208ENST00000397109 GAS2L2Q8NHY3 880 aa19.48■□□□□ 0.71
SEC13-208ENST00000397109 TAF1LQ8IZX4 1826 aa19.47■□□□□ 0.71
SEC13-208ENST00000397109 C5P01031 1676 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms